mRNA_Ecto-sp6_S_contig111.1510.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig111.1510.1
Unique Name	mRNA_Ecto-sp6_S_contig111.1510.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig111.1510.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig111.1510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig111	contig	Ecto-sp6_S_contig111:220354..228665 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	354
Hectar predicted targeting category	other localisation
Exons	3
Cds size	210

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348805.6666977-UTR-Ecto-sp6_S_contig111:220353..220369	1682348805.6666977-UTR-Ecto-sp6_S_contig111:220353..220369	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig111 220354..220369 +
1682348805.705448-UTR-Ecto-sp6_S_contig111:228537..228665	1682348805.705448-UTR-Ecto-sp6_S_contig111:228537..228665	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig111 228538..228665 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348805.6804156-CDS-Ecto-sp6_S_contig111:220369..220429	1682348805.6804156-CDS-Ecto-sp6_S_contig111:220369..220429	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig111 220370..220429 +
1682348805.6878724-CDS-Ecto-sp6_S_contig111:226212..226345	1682348805.6878724-CDS-Ecto-sp6_S_contig111:226212..226345	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig111 226213..226345 +
1682348805.6957843-CDS-Ecto-sp6_S_contig111:228520..228537	1682348805.6957843-CDS-Ecto-sp6_S_contig111:228520..228537	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig111 228521..228537 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig111.1510.1	prot_Ecto-sp6_S_contig111.1510.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig111 220370..228537 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig111:220354..228665+
coding sequence from alignment at Ecto-sp6_S_contig111:220354..228665+

protein sequence of mRNA_Ecto-sp6_S_contig111.1510.1

>prot_Ecto-sp6_S_contig111.1510.1 ID=prot_Ecto-sp6_S_contig111.1510.1|Name=mRNA_Ecto-sp6_S_contig111.1510.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=70bp
MRAEHPLAHSRKVSCGTTEELVIFIWAKQRRRRPTEVPDNYQCLSQWRLT
RKITQGMPQVHQLQLGRKT*

mRNA from alignment at Ecto-sp6_S_contig111:220354..228665+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig111.1510.1 ID=mRNA_Ecto-sp6_S_contig111.1510.1|Name=mRNA_Ecto-sp6_S_contig111.1510.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8312bp|location=Sequence derived from alignment at Ecto-sp6_S_contig111:220354..228665+ (Ectocarpus species6 EcLAC_371)
GTGCAGTGTCCACGCCATGCGCGCTGAGCACCCTCTTGCACATTCACGGA
AGGTCAGCTGCGGGACAACCGAAGAGGTGTGCGTGGGATAATCGAAATGT
TTGGTGCGGTGGTAAATCTAGTGATTAACTGATGTCATATGTTTTCTAGG
CCGCCATACCGTATGGAACCCGGCTCCCTGCGCAAACCCGCAAGGAATCA
ATGCCTCGATATCCCAGCAACCTCTCTGGCAGCTAGTACATCACGGCAAC
ATGCGCACGCATGGAGTTGAGTCTGTGATCCCGAAAATCGTTCTCGCCGG
CTGCTGGCCTCCCGGACACCCAGACTCAGCGCCTGAAGAACCTGGTTTGC
ATGCCTCTGTACTATTATAGTATTGTATTTGGTGTGCGACCGGTATCTGC
TTATTTGTTTTATGTACATAAAAGCGGTGTCTTTTTTTTATTTGTCTTTT
GCCTCTTCGGCACCTTTGTCTGAAGGACGAGGTGAGTACAGGAAGGGAAG
CTTGATGACCACCCCCTGGTGTGCATCACCATCGCCCCCCGCCCCCTCTG
CTCGAAACGAACGCGCTAGCCTACTGCAGGTATACAGTTAGCGCCCGCAC
TTCCTCTAGTGTCGGCGAGGCTCGGTTTATCCTGGACATGGCCTATTAAT
ACGTGGGTATAGAAGTTAGAAGTACAAGGGCGCTTCGCGGCGTACCGCTT
CGCGGTCGCCGCTACGCTCGTAGGTTCAATGGCGATGGCAAGTGTGTGCG
GATGTGTGTGTGGATTTTTGAAATGAGAGATAATAAGAAGAAATGCTGCG
AAGAGGAAAAGAGTCGATTCATTGTTGTTTGTTCGAAGAGCAGAGACGCA
CTGTGAATAAATTCATATGTTGCGACAGCCGGAGGACAGAGAGTAATTAA
TAACCCGGAGTAAGAAGTTTGTTTTTCAGAAACAAGGGCTCACTTTCTTC
CATGAAAAATATAGAAAAATATGGTTGTGGGGTTTTGAAATGAGAGATAC
GAAGGAGAAATGCTGTGAAAAGGGAAAAAGTTGTTAGTTTGTTCGAAGAG
CAGAGACGCACAATTCTACTATTCGTAACACACGAAGGGTTACGGGGGGG
TAAGGGGAGTGAGTGAGTGTGTCGAAAATTCAACTTGAGAAAGATGCACC
AAGCAAACAACTTTTCTCTCTCTCTTCCCCCTCTCCCATGTGCTGCCCAC
TCCCTCAGCGAGATGTTATGTGTAGCTGAATTAAGTTCGCTTCTTCTAAG
ATGAGTGGTCTTCGTATGTACGTATGTGATCTGATGTACAGCCGTCGGTG
GTGAGAATCGGGGTTGGTTGAGTACGGAAGGCAGGCGAGGAAAAGCAGCA
GCACAAATAAATCATTACACGGTACTTTTCAGCACATGTGTAGTATATAT
GTAGTAAGCCAAAGCAGAGAAAATTCGACAACTACCCACAGCAGCAGTAA
TATTGCTATATGCTCTGCCAGAGGGTTTGGGGAGTCAGATGACTGTAGAA
GTTCGTTCTACAATAAACTGCTGCTGTAGTGTAGTGCGGTAGCCAGAGAT
ATTTAATTGCGAAAAAAAGGCCTTCTTCCTCCATGAAACGGAGGAACACA
CAACGTATTTCATCATGTTTTTTTTTTTTTCTCGGGCGGGTGTAGCTTTG
CAGACAGCTGTGCGCACGACACCGGCCGCTAGCCCCCCGCTTTTAGCCGG
GATCGAAAGAGAGACGCACTACAATATAGCAGTAGAGTACTTTACCTCAT
GCCATGCAGAGAGTTGGTGGCTTGGTTGGCGTGTGTGGTATCAGGGTGTG
TAGTGTGTAGCGTGTAGCCAGCGCACCAGCCACACCCACCAAGTCAGTCA
GCCGCTTGCCGAATGTATGAACGGCTTGCACTGTCAAGAAATCAGGGCGT
GATTGGTGGATCCATGGTAGATGTCGGAAACGCGACTTTCTGCCCTCGCT
AGCGCTGCACGCAGTCCGCCCCGAGGGCGCGCGGGACGCCGGGAGAGCCC
TCGCAACACATGGCTATCGGTGGGTGCAAGTCTCGCCTCGAGGCGAGGTC
TACGGGCGGAGAAACCGCGAAAAAAGGGCTCTAGGCTCACGAGAGCATCA
GGATTGCATTTCCTGCGATCTCTTGAGCCCTCAGCTCGTAGAAAGTCCGT
CTATAGGTCTATTAGTTATAATGGACCAGTCTCAAGCGGTTGGAAACTCG
TGGGGAAGTCTCCTCGCGAAAGAAGAGCTCATCTCCGCCTCCGTGGAAGT
GTCCCCCGCAATGGAAAAAATCGTCGCAGGTGGCGTCTTGAGGCTAGGGT
CACCTCCCAAAAAGAAATTAGTTATTTTCGCGAAGCGCGGAAAGGAGGGG
CAGAGAGAAACATCAGCAAGTGTAGTTAGGTATGGCTGGAGCTACGCCAC
TACAGAGGTCACCATTGCACACGCTCACACCTCACCCGACACCACCAGCC
AGTCAGGGGATGACTGAGAGCGCTGTTTCGCTCTCATAATCATCAGCTAC
ATGTACCTGATGATGCTGCTGTTGCTGCTGCCGTGCAGGATGGGTGTGCA
CTTGCGTTCCTCGCTTTCGCTGATAGATGTAGCAGCGCGCAACTAAATGT
CGCCCCCGATGCCTCCTACGATATGTATATTTGGACGCCCTTGGCCTAAA
GCGTTGTGTACGCCTCACTTTTGTCTCTGTTTCGGGGGTGCTTCTGTGGT
GGAAGCAAAGATCGGCCTGCAGACGAAGACAGACCGCAGACAGAGTTGAC
TTGTGTGCACTCGCATTTCCCTCGCTTACGCTGTAGCAGCAGGCCTCGGG
GTCTAAAAATGGCTTCCGACGCCAGCCATGATGTGCGCCTTTGGCCGGCT
TTGGCCTACAGCAGTGTGTATGTCTCGTTGTCTCTGTTTTGTGGGGATGC
GTTTGTGTGGGAAGCTCCAAAGATCGGTAGGTTGAGTATGATGCAAACGG
ACTGCAGATTGACTTGCGTCGTCAATCGCTTGTGCTGCCGACAGCAGGCA
ACAGGCTGTAAGAGTCACACCCAACGCCTCCTATGATGTGTGCCTTTGGC
TGCCCTTGGCCTACAGCAATCCGTATGCTGTTGTTCTGGTTGTCTCGTAT
GTTATCTGCGTGTTATGTGTGGTACTGCTTTGCAAGAGGAATGCCGGGAT
TCTCCCGATAGCGTCGTGCCCATCGCCCAATCATCTGCCTCTGTCTTACA
AAATGTCTTACAGAATCGACCTGTGATTGGTGGGAGATGGGTATCTACCC
GGCTCTACCCCTCCATAACATAGATGATTGCCCTACGTATGGGTGCTCTG
CCTACGGCTACGCCGGGCTCCTCACAAAAAAAATGTGTGGTGAAGAGGGG
ACGGCGTTTCGTAGAACCAAACGAAACTACTTGAATTAGAGAAAGGGATT
TGCTCAAAAGCAGCTTTTTACGGGGGGGACAAAAAAAAAGACCGCGCAAG
CATCCTTTTAATAACGTCTTGCACCGTAGATCGATATCCAAAAGCCTCTA
CATGTTTTTGCATCGTGAGGACACCTGGTGAACCAGCTACATTCGCGTTC
AATCCGTTTGTTGATCGGGCATACACAGGAAGCGCACAGGTATCGGGGCA
CCCCAAAGTCGTGTCATCTGACACAACGAAATGCCTGCAGGTGATTTTTG
CTGGTGAAACAATGCGTCCCGTTACCACAGTATGCATAGTCCACAACTAC
CTGTTGCAGGGTCGTATGCATACAAGCAAAGAGAAGAGTGAATTGTACAG
CAGTGGATGCATTGAATAAAAATTAGTCTTGCCATGAAAAAGTATTCACT
CTACCTGGCAAGTAGTTTTCATGGCGAAAGAGACAAGGTCAGCGTTTTGC
GTCGTTTTGGCTGCGGTGGTGGTGGTGGTCGCAACAACAGAGTTGGGTTA
TTTTTCTGTGAGTTGATGTGTGCCTTTACCACATTTCTAAAGAGAGCAGC
AGCAGCAATTTCCCCTGTAACATGTACTTCACTAGTGTTTTTACAGAAAT
ACGGGACAATCGACACAAAAATTCAAAAGTGTGCCGCACACAGGTAAGGT
AGAAATTCATATAGCACGCCCGACACTGCATGCGAATTAGATACAGGGAC
CACTGCTGCATCACAAGAGTATTGCTTGTGGGAGGGTAAACAAGGTGGGC
AGTGACATGCCTCTCGAACGTAGTGAGTTCAAGAAAGAGCTCAAAAAGAG
GGCTGCTGGCACGTACATGTTTCACCGCCACAAGGGTCGATAGCCAAAGC
TGAAAGAATGCGCAGGTCAGCCTTTCGATACTCGTTTTCGGGAGCTGCTT
ACTTTCCCAGCTGACAACGGAATGGGGTTGCAAGGGTAGTTGGGGCGCTT
TCGGCGAGAGAGCGGTCAGCGAGATTTGGCAACATGCCGCACGGGGGGCG
CTCACGACGGGAAACGCAGCCCGCTGGGGCGTTGCAGTTGCGTCTCCCCC
TTGGACAAACCCTGCTTGTGCGCCGAATCCGACCTGCGGAGTGTACCAAA
GGCAAGAGCAGCGCCGTGTCTTGTTAGAGCATCAAAAACGTCGTCGACTT
GATAGCAGGGTGTAAAAGTCGGGAGTGCGCAGACCCGAGCCGAAGGCAAG
ATGCGGCTCCGCGCAGCCCGCCCCCCCGGGATGGCCCGCGGAGGGCCCTG
CGGTGCGAAAAATTGGGGTTTTCCATATAAAAATCACGTCGTGTAGTGAC
AATGAAAATGGCAATTGTGGTGTTTTTGACGTGTTTTAAAGCAGGATATG
TCGCTCCCAGCGAAAAAAACAGAGTGCAAGATTTTCTCGCCTACGCGCGA
GACAGGGGGCCGCAAAATGTGTTACAGCCTCTGGCGACAAACTGCAGATA
GGGGGCGGGAGATTCTGCGCTGCGAGCATATTTTTCCAAAAAAATCTGTG
TCGGTCCAAAGCCGCAGGCCATTTGTTTACACCCTGCTTCAAGACACGAT
TTCTTAGCGATCACGATTTGCCTTTTATGTATGTACTCTAAGAGAGAAGG
AGAAGGAGAACGAGCCCCCACCCCCGCAAGTAATTCATTATTGCCGTATG
CATTTGAACGCCTGCAGACAGAGCAGGCGGAGTCAAATCTGCTGAGTTCT
CATATACATGATGGCGCGCACGGCCGCGAACGACGAAAATTCCTATTCCG
CCGTGTTGATTAGTTGTTCCGCGTTGCCATCGGTCAAAAAGAAGGTACCG
CCTGGACCAATTTTGAAAGCTGTTGACTTTGCAGTAACTACAATGTCGGC
TCCGAAAATAGTGGCGTTGGAACCGCCTCGTCGAAAGCTTTCCCAAGATG
TTAGAAGTATTTCGTGTTTCGTCTCTTCCGTCGTGGAGTTTTCGGGGTAG
GTAGTCCTCAAGCAAGGCATCATTCCGTCGCCATCGATTGGAGGACATAT
GGGTATTGCATCAATCACGTCACAGGAGTTCTTCTGTTCGACTCCAGTTT
GGAGATCTTCAGTTGGAGAAGCAACGCCATCGGGTAGTTTGAAATTGGAG
CGTCGGGAAGAACTGGGAGAAACATACGCGTCCGCTTACGCCACGTAGTC
CGATATCCCCTCGAAGGCGACCGGTTGTATTTTGCCTCATTGTTCGCACC
CACCTGTCCACCGCGTTCCTTGCTAAATCAGATCGAGGGCCTCCGTTTCT
TTGCCGTCAAGCACCCAAACCTACAATGAAGGGACACATTCGATGCGAAT
CTCTCCTAGAGAACGCCACACAGCAGTTTGGTAACTTTTTCAAATGCTCG
GATGTGTGATCTGGGGTTCGATATCTTATGTCCCTGGCGGTATTCTACGG
CCTTTGTTTCGCCGTCTGTCGCCGCGACCCCCCCCGTGCTTATGTGCTTC
TTCACGCAGTTGGTGATATTCATTTGGGCAAAACAGCGACGGCGTCGTCC
TACCGAGGTGCCCGACAACTACCAGTGTCTATCACAATGGCGACTAACGC
GGAAAATAACTCAGGGAATGCCACAAGTCCATCAACTACAATGTAAGTTC
TTGGATATTTTTTTCGTATTTGTGTCATATGTCGCAGACCTTTTCGGCCA
CGCATTCCAAGTGCATCTAGTACTTTGTACTCCGGAGTACAAGGTTTTTG
GGGACCTACGGCGCCAGGCTGAGTAAAGCGATTCCTGAGACCAGAATAAT
TGGCGGGTGCGTAATTAAGGCTGTTGGTGTGCCGACAGTTTTTGTGGGTT
TATTTTTATTGCACAGTAAGCAGTGACGCATGGCACACCGTCGCTCTATG
ATGGACTGCGGAGCCCTATCTTTTCAGCATGGATATGCATGATATTTTCA
GCATGGATCAGCATGCTAGTCACACACATAGGATGGACCCACCGGAAAAG
AAAAAACAAACGCGCAGCACCCACTGCATTTCGCTTGGAATGTCACCTAC
TTCTAGATTTACCCTTCCTTGGGGTGTTTTTTTTTTTTTAGTTGCCGACC
ACATGGGATTGCCGACCACATGGGATTGCTGTAGCCGCCCCTGTTCCCAC
CCGGCTATGGGGCCGCAGGGACATTGCATAGGGACATTGCATAGAGAGCA
CGACAGTCACCGCTACTCATGCCGCGGAAGCGGTCGCAAAAGCTGCAGCA
GTGGCGGCGGCAGAGCCGTGGCGCCCGGGGCACAAATTTTCGGAGAAAAA
GAATACACCGATGAGAAAGAGCAGGTAGGTTTGACTTTTCCAACAAACTG
AAGCCACTGCCCCCCTTGTCGCCCCTCTACGGGGTTGAAGAGACATTGCA
AGGAAAGCAGGGCAACCACTGCTACCAATGGTGCAGAAGCAGTAGTAGCA
AGAGCTGCAGCGACGCAGTATGCAGCAACGCTGAAAGTAGGGTTGAATGA
TTCAAAACTCAGTTCAACGCGCGCACACGCACACGGAAGAGGCAGCGATC
TCATCCAAAAATCAATACACACCCAAACGGATTTGCAACAGCCACTCCCG
TTACCACCCGTTTGTGAGGCTCAACAGACATTGCAAGGAAAGCAAGAAAA
CCACTCCTACAAATGGTGCAGGAACGGTACCAACAGCTGTAGTAGCGCCG
ATGGCAGGGCCGTTGGGCTTGTACACAAATTTCAGAGATGGTGAGCGGTA
AAACAAACACCGACGAGGAAGAGGTACGTCTGATTTTTACAACATGGTAC
AATAAAAGACTGGAGCCGCCGCCGCCCTTCCCCCCCCTTCAAGGGGTTGA
AGAGACATTGCCAGGGAAGCAGGGAAAGCACTGCTACTCATGGCGCAGCA
ACGGCGGCAAGAGCTGCAGTGTAGCGTCGGTGGTGAAGTCCAGCATTGTC
GCCGAAACGGCAGGTCATGAGAAAAACATTTTATCGTACAATAAACGTCG
AACAATACCATTTGAGCGATTTCCACCATCGTGCCTGCTTCGCCCCCGCT
CCCAAACCCCAGACAGACCACCCCCTCGCACACTCCCCCCTAGTATTGCT
CCGTCCAGAGCTTGCTCCCTGAGTGCTCGCCCCGTAGACGGCAGTGGGCT
TCCGCGCCCTTGATCCGCCTGTCGCTACCGAATCAGCTGGTGGTGTGATC
ACATTTTTTTTTTGCTCGACAAGCGGGGGATTTTTTGGAACCGTGCGTCA
CCCAAAACTACCTCATCGTAGCAGTCGTTTTGAGAGATGTTGGCGCAACG
GATTCTGGAGGGGTTTCTTGTATCAGCTCCATGAACACGATAGCTGTGTT
TTAATCACTGGCGATTTCCGTTTAGGTTGCATACGTTCGTGGCAGCAGGT
GGAAAAGACCAAAAATGACATGTTTTTAGAGGGTTTGATAGGTTTCATTC
CGCCGATTGAAAAACTGACCGATGAATCCATCGATGTGTCCTGTTCACTG
GTATGTACTGAACCTCAAGAGCCAGCTCGTTCGTGGCGTCGAGAAATCCG
GGATTCCCTCCCGCTGTTAGATATCAAGTCAAAACAAGGTTTGGTGTCGC
CAGCCAAAAAAGCGGGAAAATTTTGTTTGTGTGATATTTCAGCGAGCAGC
CTGTCCTCGAGCATACACCAAAAAGGGGGATGAGGCGCAGGGCTAACTGT
GAAGTCCCGCTTTTCTTGACGATGCGGTTAGGGTTCCGCTCTCTCAATTT
GCCGCAGCCAACCGCAAATGAAGTCGTCGATGGCCACCTGTCTCGTCTTG
ACTGGATTATTTGATAGTGGGAAGGAAGACCTGACAGCCCAACACCCGGC
GAAGCTGATGTCGTCGCACGGCGTTGCTCCGTGCGCGGCGGGCCCTGGCG
GGGGTGTCGCGCCGGAGGTTAGAGACGAGGAGGAGGGAGAGGATTGCGAT
GGCTTGCTGAAG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig111:220354..228665+

>mRNA_Ecto-sp6_S_contig111.1510.1 ID=mRNA_Ecto-sp6_S_contig111.1510.1|Name=mRNA_Ecto-sp6_S_contig111.1510.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp6_S_contig111:220354..228665+ (Ectocarpus species6 EcLAC_371)
ATGCGCGCTGAGCACCCTCTTGCACATTCACGGAAGGTCAGCTGCGGGAC
AACCGAAGAGTTGGTGATATTCATTTGGGCAAAACAGCGACGGCGTCGTC
CTACCGAGGTGCCCGACAACTACCAGTGTCTATCACAATGGCGACTAACG
CGGAAAATAACTCAGGGAATGCCACAAGTCCATCAACTACAATTGGGAAG
GAAGACCTGA