mRNA_Ecto-sp6_S_contig110.1476.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: A0A6H5JA94_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA94_9PHAE) HSP 1 Score: 765 bits (1976), Expect = 4.420e-271 Identity = 444/656 (67.68%), Postives = 470/656 (71.65%), Query Frame = 1
Query: 85 TNASSVVWRTRGGRFGSGGPRMAAGGVVAGDSVGDAPFPTPEPTASTVARGDGSSSRPLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRQFAAGSGLAPPSSAGH---------------RHLGSRHRRQG------GGYPSIDQRDHQAAR--ADPSDGNRFSTGPKEEEQGPTPSRKTDQRHRQHQDPGLPRSVNDSGDGGVGGSNGIGSVTRNAASREGNTSDPRVRNRSGRRTAAAAAAETGAVENAVGAITKRYRALVQVLPGRSPLKASPIPMTHFQKVSRRAPKEFRRDRPPQPNATSNARSADTPGAGEDDEGSWIECRLLVLSASEASVSPVVTSAGFPSRTGGSIKGGSADGGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDYLYGPAARETSPTGPAATAASAAATTPVVVGGRTASATKPRPTGG-----------------TFVLRRSPAPAAAAAEHGFVTKEESVRQPGLQAGFQRDENDSRSGFVESPKMALQASHISLEFEAEDGRRERHVFTLARDTCWWFDEGWGACVSDE 1932
T ASSV+WRTRGGRF SGG R+ A GVVAGDSVGD PFPTP PTAST ARGD S SRPLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFP+PRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIR G L P + R + +R G P +R ++A R A +DG P EE T + + + P + R++ T+ A+ G A AAAAETGAV+NAVGAITKRYRALV+VLPG SPLKASPIP+THFQKVSRRAPK+FRRDRPPQP ATSNAR ADTPG GEDDEGSWIECRLLVLSASEASVS VVT AGFP+RTG SIKGG GVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGD LYGPA RETSPTGPA AA+AA TTP VVGG TFVLRRSPAPAAAA E G V +EE+VRQ GLQAGFQ DE R GFVESPKMALQA HISLE EAEDG RERH FTLARDTCWW DEG GACVS E
Sbjct: 4 TIASSVIWRTRGGRFNSGGARIGAEGVVAGDSVGDDPFPTPAPTASTAARGDESGSRPLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPKPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRGVRPGLDLLLPHRLDNDTSGLVIVAKGADTLRSINEIIKRPGLMLQTGDDSPRDRRRKNKALRRAAKLADGTANIKTPVSEEASMTEAAAATESEALPETPQVGRAI---------------PPTQAFATGAG---------------AEAAAAETGAVQNAVGAITKRYRALVEVLPGSSPLKASPIPLTHFQKVSRRAPKDFRRDRPPQPKATSNARLADTPGGGEDDEGSWIECRLLVLSASEASVSSVVTPAGFPTRTGDSIKGGXXXXGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDNLYGPAVRETSPTGPAEPAATAAETTPAVVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVLRRSPAPAAAATEPGLVVEEEAVRQVGLQAGFQGDETSCRGGFVESPKMALQACHISLELEAEDGGRERHAFTLARDTCWWVDEGRGACVSAE 629
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: D7G4K2_ECTSI (Putative RNA pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K2_ECTSI) HSP 1 Score: 717 bits (1851), Expect = 2.890e-253 Identity = 420/625 (67.20%), Postives = 440/625 (70.40%), Query Frame = 1
Query: 148 MAAGGVVAGDSVGDAPFPTPEPTASTVARGDGSSSRPLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRQFAAGSGLAPP-----SSAGHRHLGSRHRRQGGGYPSIDQRDHQAARADPSDGNRFSTGPKEEEQGPTPSRKT---DQRHRQHQDPGLPRSVNDSGDGGVGGSNGIGSVTRNAASREGNTSDPRVRNRS---------GRRTAAAAA-------------AETGAVENAVGAITKRYRALVQVLPGRSPLKASPIPMTHFQKVSRRAPKEFRRDRPPQPNATSNARSADTPGAGEDDEGSWIECRLLVLSASEASVSPVVTSAGFPSRTGGSIKGGSADGGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDYLYGPAARETSPTGPAATAASAAATTPVVVGGRTASATKPRPTGGTFVLRRSPAPAAAAAEHGFVTKEESVRQPGLQAGFQRDENDSRSGFVESPKMALQASHISLEFEAEDGRRERHVFTLARDTCWWFDEGWGACVSDE 1932
MAAG VVAGDSVGDAPFPTPEPTASTVARGDG+SSRPLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPA AKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIR L P ++G + +R+ G + ++ A + G E + P +T R R+ ++ L R+ + G+ I + AS T+ S GR A AETGAVENAVGAITKRYRALVQVLPGRSPLKASPIPMTHFQKVSRRAPKEFRRDRPPQPNATSNARSADTPG GEDDEGSWIECRLLVLSASEASVSPVVTSAGFPSRTGGSIKGG DGGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDYLYGPA EESVRQPGLQAGFQRDENDSRSGFVESPKMALQASHISLE EAEDGRRERHVFTLARDTCWWFDEGWGACVSDE
Sbjct: 1 MAAGVVVAGDSVGDAPFPTPEPTASTVARGDGTSSRPLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPALAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRSVRPDLDLLLPHRLDIDTSGLVIVVTRNL----GVQELGLARNRTKHAGRAKGAGTLRSINEIIKRPGLILRTGIDSPRDRRRKNKALRRAAKLTN-----GTANIKTPVYQEASMTAATAASAAAAESEALPETSQVGRAIPPTQAFATGAGXXXXXXXAETGAVENAVGAITKRYRALVQVLPGRSPLKASPIPMTHFQKVSRRAPKEFRRDRPPQPNATSNARSADTPGGGEDDEGSWIECRLLVLSASEASVSPVVTSAGFPSRTGGSIKGGIGDGGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDYLYGPA-------------------------------------------------------------EESVRQPGLQAGFQRDENDSRSGFVESPKMALQASHISLELEAEDGRRERHVFTLARDTCWWFDEGWGACVSDE 555
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: A0A836C7F4_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7F4_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.100e-22 Identity = 55/139 (39.57%), Postives = 76/139 (54.68%), Query Frame = 1
Query: 286 DYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRQFAAGSGLAPPSSAGHR 702
+Y RHAY+P W + LG E AR +I FGG Y P P K +R DP + G+Y+RI P PR+YP DW++ ++ + MLVNKPA VP+H TVDN N++A ++ G+ + SA HR
Sbjct: 10 EYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMP---PGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQI----SAAHR 141
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: A0A6U0VH21_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VH21_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.450e-14 Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 406 KPGGAPASAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRQFAAGSGLAPPSSAGHR 702
KP G +P+R LDP +E G+Y+R++P P RYP LG+DW+ +I+ A ++V+KPAG+P+HAT DN EN L +R AG + HR
Sbjct: 32 KPSGY---RRPERVLDPGFPLEPGDYVRVYPVPARYPEALGIDWDKRILRMDADFVVVDKPAGIPSHATKDNLRENTLEQLRLHFAGEAFSDALRLPHR 127
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: K7PEZ7_9BACT (Pseudouridine synthase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K7PEZ7_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 2.200e-12 Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 1
Query: 292 VRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIR 651
V H + A L + G T E L++FG VY + ++ +D DR + G+Y+R+ P+R+P G+DW + IV+ ++VNKPAG+P HAT+DN EN+L +R
Sbjct: 11 VGHYVAKEATTLVECLVQHFGLTTEEGERLVSFGSVY----------QDRQRVDSDRALSPGQYIRVHLNPKRFPVE-GIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENLLHQLR 119
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: A0A2H0WDZ0_9PROT (RluA family pseudouridine synthase n=1 Tax=Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8 TaxID=1975526 RepID=A0A2H0WDZ0_9PROT) HSP 1 Score: 74.3 bits (181), Expect = 8.480e-11 Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 292 VRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRQF 657
VRH SP G L + LG T + R L+ G +Y + K E E++ YLRI PRR+P ++ +VY+ G+ +VNKPAG+P H +VDN EN+L ++QF
Sbjct: 20 VRHLLSPLNGTLEQVLEKSLGLTSDQTRALLHLGAIYLQ-------GKRLNESAQQTEIKAQTYLRIHQTPRRFP-IEKLNPTQCLVYEDDGLFIVNKPAGLPVHPSVDNIQENVLTLLKQF 133
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: A0A7S0TTK8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTK8_HEMAN) HSP 1 Score: 71.6 bits (174), Expect = 2.440e-10 Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = 1
Query: 292 VRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAE 630
VRH +GPL + + L EE A+ L+ G V+ A A + V G YLR+ P PRR+P DW+ ++V+ + ++VNKP G+P HA++DN E
Sbjct: 41 VRHLAINLSGPLCAHLTDLLDMDEEHAKWLVDMGAVFIDKVRVGAGAY-------NAIVPQGSYLRVHPSPRRFPVAWTADWQKRLVHVNSNYVIVNKPGGLPCHASLDNAKE 146
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: A0A8J5XJB9_DIALT (PseudoU_synth_2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJB9_DIALT) HSP 1 Score: 73.6 bits (179), Expect = 3.320e-10 Identity = 48/127 (37.80%), Postives = 60/127 (47.24%), Query Frame = 1
Query: 322 PLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRQFAAGSGLAPPSSAGHR 702
P S+VA L E A L G VY GG +R LDP V ++R+ PRRYPA DW +V+D +++NKP GVP HATVDN E A + G+ L P HR
Sbjct: 58 PAASTVAQLLELDEAHAAWLCALGAVYV--GG-------ERALDPRAPVGANAHVRVHTRPRRYPAADATDWRRAVVHDGGSFVVLNKPRGVPTHATVDNVVETCQAQL-----GALLGVPLGCPHR 170
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: I0Z561_COCSC (Pseudouridine synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z561_COCSC) HSP 1 Score: 70.9 bits (172), Expect = 1.990e-9 Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 307 SPRAGPLWSSVAAFLGWTEELARGLITFGGVYY----KPGGAPASAKPKR--ELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENM 636
+PR G L A T ++ GLI G VYY PG AP + R E P ++ G+++R+ P P+RYPA DW +++++ A +VNKPA +P + N E +
Sbjct: 39 APREGTLLEIAAEVSDLTLDVVSGLIDLGAVYYGETEAPGQAPKWRRANRLAEAAPHHPIKQGQWVRVHPNPKRYPAAQTTDWAARVIHLDADFCVVNKPARIPVQSHESNSVETV 154
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Match: A0A8J9WNS2_9CHLO (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNS2_9CHLO) HSP 1 Score: 69.7 bits (169), Expect = 7.120e-9 Identity = 42/148 (28.38%), Postives = 69/148 (46.62%), Query Frame = 1
Query: 220 STVARGDGSSSRPLPRLNAPPHD---YVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYY-KPGGAPASAKPKR-----ELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENM 636
++ G+ +P PR+ P + +PR G L G + LI G VYY P + K +R E D ++ G+++R+ P P+RYPA VDW +++++ A + +VNKPAG+P + N E +
Sbjct: 40 ASTTEASGNVWQPPPRIQKQPGGEDVVIIREPAPRDGTLLDIATEVSGLHCASVQELIDLGAVYYGDPAACDEAPKWRRANRLAEAAQDHPIQQGQWIRVHPNPKRYPAAQAVDWAARVIHLDADICVVNKPAGIPVQSHESNSVETV 187 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig110.1476.1 >prot_Ecto-sp6_S_contig110.1476.1 ID=prot_Ecto-sp6_S_contig110.1476.1|Name=mRNA_Ecto-sp6_S_contig110.1476.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=645bp MTCRWGLATATILIRAAAGLSVTARPTRTNASSVVWRTRGGRFGSGGPRMback to top mRNA from alignment at Ecto-sp6_S_contig110:215307..224685+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig110.1476.1 ID=mRNA_Ecto-sp6_S_contig110.1476.1|Name=mRNA_Ecto-sp6_S_contig110.1476.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=9379bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:215307..224685+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:215307..224685+ >mRNA_Ecto-sp6_S_contig110.1476.1 ID=mRNA_Ecto-sp6_S_contig110.1476.1|Name=mRNA_Ecto-sp6_S_contig110.1476.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1935bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:215307..224685+ (Ectocarpus species6 EcLAC_371)back to top |