mRNA_Ecto-sp6_S_contig110.1459.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig110.1459.1
Unique NamemRNA_Ecto-sp6_S_contig110.1459.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 5.340e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   27 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.140e-52
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   28 ESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.360e-51
Identity = 81/90 (90.00%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   29 ESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: A0A8J5MIZ0_9STRA (Histone domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MIZ0_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.150e-50
Identity = 80/90 (88.89%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESYS+YIYKVL+QVHPDTGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 ESYSTYIYKVLRQVHPDTGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 121
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 165 bits (418), Expect = 1.580e-50
Identity = 80/90 (88.89%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   31 ESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.860e-50
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  161 ESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: M4B6M3_HYAAE (Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B6M3_HYAAE)

HSP 1 Score: 164 bits (415), Expect = 4.120e-50
Identity = 79/90 (87.78%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESYS+YIYKVL+QVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   28 ESYSTYIYKVLRQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 117
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 164 bits (416), Expect = 4.510e-50
Identity = 80/90 (88.89%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   41 ESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.680e-50
Identity = 80/90 (88.89%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   32 ESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.350e-50
Identity = 80/90 (88.89%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:  118 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   64 ESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI5.340e-55100.00Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A836CJ22_9STRA3.140e-5293.33Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA5.360e-5190.00Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A8J5MIZ0_9STRA1.150e-5088.89Histone domain-containing protein n=1 Tax=Phytopht... [more]
B8BX20_THAPS1.580e-5088.89Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A836CJT3_9STRA1.860e-5093.33Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
M4B6M3_HYAAE4.120e-5087.78Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B... [more]
A0A6U0X3U9_9STRA4.510e-5088.89Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A6U6DWX5_9STRA4.680e-5088.89Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7S2P1D6_9STRA6.350e-5088.89Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:68087..68476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score176.8
Seed ortholog evalue6.6e-42
Seed eggNOG ortholog2880.D7FWI8
Model size392
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
Cds size390
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348800.9645731-CDS-Ecto-sp6_S_contig110:68086..684761682348800.9645731-CDS-Ecto-sp6_S_contig110:68086..68476Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 68087..68476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1459.1prot_Ecto-sp6_S_contig110.1459.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig110 68087..68476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig110.1459.1

>prot_Ecto-sp6_S_contig110.1459.1 ID=prot_Ecto-sp6_S_contig110.1459.1|Name=mRNA_Ecto-sp6_S_contig110.1459.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=130bp
PLVPLSHNTFINTMAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVL
KQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQ
TAVRLMLPGELAKHAVSEGTKAVTKFTSS*
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mRNA from alignment at Ecto-sp6_S_contig110:68087..68476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig110.1459.1 ID=mRNA_Ecto-sp6_S_contig110.1459.1|Name=mRNA_Ecto-sp6_S_contig110.1459.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=390bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:68087..68476+ (Ectocarpus species6 EcLAC_371)
CCACTCGTGCCTCTCTCGCACAACACCTTCATCAACACCATGGCTAAGAC
CCCCTCCAAGAAGTCCGCCAAGGCGCCCAAGAAGGCCGGCGACAAGAAGA
GGACCAACAAGAGGACCGAGTCATACTCCTCCTACATCTACAAGGTCCTC
AAGCAGGTCCACCCCGACACCGGTATCTCCAAGCGCGGCATGTCCATCAT
GAACTCGTTTATCAACGACGTCTTCGAGCGCGTGGCCGGCGAGTCCGGCA
AGCTCACCCGCTACAACAAGAAGGCGACCCTGTCGTCGCGCGAGGTCCAG
ACCGCCGTGCGCCTCATGCTCCCCGGGGAGCTCGCCAAGCACGCCGTGTC
CGAGGGCACGAAGGCCGTCACCAAGTTCACCTCGTCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:68087..68476+

>mRNA_Ecto-sp6_S_contig110.1459.1 ID=mRNA_Ecto-sp6_S_contig110.1459.1|Name=mRNA_Ecto-sp6_S_contig110.1459.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:68087..68476+ (Ectocarpus species6 EcLAC_371)
CCACTCGTGCCTCTCTCGCACAACACCTTCATCAACACCATGGCTAAGAC
CCCCTCCAAGAAGTCCGCCAAGGCGCCCAAGAAGGCCGGCGACAAGAAGA
GGACCAACAAGAGGACCGAGTCATACTCCTCCTACATCTACAAGGTCCTC
AAGCAGGTCCACCCCGACACCGGTATCTCCAAGCGCGGCATGTCCATCAT
GAACTCGTTTATCAACGACGTCTTCGAGCGCGTGGCCGGCGAGTCCGGCA
AGCTCACCCGCTACAACAAGAAGGCGACCCTGTCGTCGCGCGAGGTCCAG
ACCGCCGTGCGCCTCATGCTCCCCGGGGAGCTCGCCAAGCACGCCGTGTC
CGAGGGCACGAAGGCCGTCACCAAGTTCACCTCGTCCTAA
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