mRNA_Ecto-sp6_S_contig110.1458.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 227 bits (579), Expect = 3.680e-75 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 366
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 225 bits (574), Expect = 1.270e-73 Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 363
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct: 46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 212 bits (540), Expect = 4.990e-69 Identity = 110/118 (93.22%), Postives = 117/118 (99.15%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 212 bits (540), Expect = 2.580e-68 Identity = 110/118 (93.22%), Postives = 117/118 (99.15%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 208 bits (529), Expect = 1.410e-67 Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE) HSP 1 Score: 223 bits (569), Expect = 2.750e-65 Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVV 360
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK V
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 199 bits (506), Expect = 4.980e-64 Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 1
Query: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 363
MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA) HSP 1 Score: 200 bits (508), Expect = 7.220e-64 Identity = 104/122 (85.25%), Postives = 115/122 (94.26%), Query Frame = 1
Query: 1 MSGKGKGGRGK----KSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGK KSTTRSA+AGLQFPVGR+ RFL+KG++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RIIPRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 122
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: A0A2R5GVM3_9STRA (Histone H2A n=4 Tax=Labyrinthulomycetes TaxID=35131 RepID=A0A2R5GVM3_9STRA) HSP 1 Score: 199 bits (505), Expect = 8.320e-64 Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 1
Query: 1 MSGKGKGGRGKK---STTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGKK +TTRSAKAGLQFPVGR+ R+LKKG YA+RVG GAPVY+AAVLEYL AE+LELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVL+P K
Sbjct: 1 MSGKGKGGRGKKGGKATTRSAKAGLQFPVGRIARYLKKGGYATRVGGGAPVYMAAVLEYLAAEILELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLMPSK 121
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.430e-63 Identity = 103/119 (86.55%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig110.1458.1 >prot_Ecto-sp6_S_contig110.1458.1 ID=prot_Ecto-sp6_S_contig110.1458.1|Name=mRNA_Ecto-sp6_S_contig110.1458.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=123bp MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLback to top mRNA from alignment at Ecto-sp6_S_contig110:67401..67769- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig110.1458.1 ID=mRNA_Ecto-sp6_S_contig110.1458.1|Name=mRNA_Ecto-sp6_S_contig110.1458.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=369bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:67401..67769- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:67401..67769- >mRNA_Ecto-sp6_S_contig110.1458.1 ID=mRNA_Ecto-sp6_S_contig110.1458.1|Name=mRNA_Ecto-sp6_S_contig110.1458.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:67401..67769- (Ectocarpus species6 EcLAC_371)back to top |