mRNA_Ecto-sp6_S_contig11.1260.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: D8LAV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV9_ECTSI) HSP 1 Score: 221 bits (563), Expect = 9.390e-71 Identity = 110/149 (73.83%), Postives = 110/149 (73.83%), Query Frame = 1
Query: 1 VLVDVGFWADPRDSGDKRPDPAQLVDEEWGGTVEAVAVALYVRSGFLESFELGYSFCRFGCCGDGS--------------------------------------SKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSLRNLRA 333
VLVDVGFWADPRDSGDKRPDPAQLVDEEWGGTVEAVAVALYVRSGFLESFELGYSFCRFGCCGDGS SKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV FSLRNLRA
Sbjct: 59 VLVDVGFWADPRDSGDKRPDPAQLVDEEWGGTVEAVAVALYVRSGFLESFELGYSFCRFGCCGDGSAAQTSARDSKRRSWFSAIGGNGGRCGGGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVTFSLRNLRA 207
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: A0A1V9Y7G1_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7G1_9STRA) HSP 1 Score: 102 bits (254), Expect = 5.550e-26 Identity = 50/104 (48.08%), Postives = 65/104 (62.50%), Query Frame = 1
Query: 4 LVDVGFWADPRDSGDKRPDPAQLVDEEW--GGTVEAVAVALYVR-SGFLESFELGYSFCRFGCCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV 306
L++VGFW +D D RP P + D+ W +A V Y++ G +ES+E+GYSFCR G C S K MG TLTDG Y WPEGL HY++ H VRPP +F+
Sbjct: 3 LLEVGFWQ--KDEHDDRPHPREFQDKAWFIAHDNQAARVIEYLQWGGCVESYEMGYSFCRLGDC---SGKEMGACTLTDGVYCWPEGLVHYVKHHDVRPPQEFI 101
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: W4GN93_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GN93_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.320e-24 Identity = 54/115 (46.96%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 4 LVDVGFWADPRD-SGDKRPDPAQLVDEEWGGTVEAVA--VALYVR-SGFLESFELGYSFCRF-GCCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSLRNLRA 333
+ ++GFW D +GD RP P L D+ W +A V YVR +GF+ES+E+GYSFCR C SSK +G T+TDG Y WPEG HY+E+H V PP DFV L+++ A
Sbjct: 1 MHEIGFWRKYNDDAGDVRPHPQSLQDKAWYDRRADMAAKVIWYVRHAGFVESYEMGYSFCRIDSSC---SSKALGACTMTDGMYCWPEGYVHYLEQHHVVPPADFVEHVLQHVAA 112
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: A0A1V9YWU9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWU9_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.010e-23 Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 1 VLVDVGFWADPR-DSGDKRPDPAQLVDEEWGGTVEAVA--VALYVRS-GFLESFELGYSFCRFGCCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV 306
L++VGFW D D+RP P L D W A+A V Y+R+ G +ES+E+GYSFCR G D + K MG T+TDG Y WPEG AHY++ H VRPP + V
Sbjct: 3 TLLEVGFWRQTEGDRLDQRPHPRALQDPSWFAEHPALATRVISYLRTRGCVESYEMGYSFCRLGL--DCAPKEMGACTMTDGVYCWPEGYAHYLQAHHVRPPQELV 106
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: A0A067CDZ9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDZ9_SAPPC) HSP 1 Score: 97.1 bits (240), Expect = 2.500e-23 Identity = 53/107 (49.53%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 1 VLVDVGFWA-DPRDSGDKRPDPAQLVDEEW-GGTVEAVAVAL-YVRS-GFLESFELGYSFCRFG-CCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV 306
+LVDVGFW D D D RP P L D W V A+ + Y+R+ G +ES+E+GYSFCR G C K MG T+TDG Y WPEG AHY++ H VRPP + V
Sbjct: 1 MLVDVGFWCKDEADPLDGRPHPRTLQDAAWFSENVGLAAIVVDYLRTQGCVESYEMGYSFCRLGDAC---PPKSMGACTMTDGVYCWPEGYAHYLDIHCVRPPQELV 104
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: A0A485KNH7_9STRA (Aste57867_9691 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNH7_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 5.990e-23 Identity = 54/110 (49.09%), Postives = 66/110 (60.00%), Query Frame = 1
Query: 4 LVDVGFWA-DPRDSGDKRPDPAQLVDEEWGGTVEAVAVAL--YVR-SGFLESFELGYSFCRFG-CCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSL 318
+ +VGFW D D RP P L D+ W + A L YVR +G +ES+E+GYSFCR C SK MG TLTDG Y WPEG AHY+E+H VRPP+ F+A L
Sbjct: 1 MEEVGFWRKSDADPADLRPHPQALQDKTWYMENKGTARQLIAYVRYAGCVESYEMGYSFCRIDPSC---PSKVMGACTLTDGVYCWPEGYAHYLEQHHVRPPEVFLAHVL 107
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: T0Q7W4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q7W4_SAPDV) HSP 1 Score: 94.7 bits (234), Expect = 2.060e-22 Identity = 51/107 (47.66%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 1 VLVDVGFWA-DPRDSGDKRPDPAQLVDEEW--GGTVEAVAVALYVRS-GFLESFELGYSFCRFG-CCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV 306
L++VGFW D D D RP P L + W A +V Y+R+ G +ES+E+GYSFCR G C K MG T+TDG Y WPEG AHY++ H VRPP D V
Sbjct: 3 ALLEVGFWCKDEADLLDGRPHPRTLQEPVWFAANADLAASVVDYLRTQGCVESYEMGYSFCRLGDAC---PPKSMGACTMTDGVYCWPEGYAHYLDVHCVRPPQDLV 106
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: A0A1H3H1R2_9BACT (Uncharacterized protein n=1 Tax=Hymenobacter psychrophilus TaxID=651662 RepID=A0A1H3H1R2_9BACT) HSP 1 Score: 93.2 bits (230), Expect = 1.520e-21 Identity = 48/106 (45.28%), Postives = 61/106 (57.55%), Query Frame = 1
Query: 1 VLVDVGFWADPRDSGDKRPDPAQLVDEEWGGTVEAVAVALYVRSGFLESFELGYSFCRFGCCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSL 318
LV GFW + PDPAQ VD++W + E + V Y+R G + +GYS+CRFGC + MG LTDG Y WPEGLAHY+E H VR P + V+ L
Sbjct: 5 ALVGFGFWRSVFEP--LLPDPAQFVDDKWD-SAERLQVINYLRQGRQLTHWMGYSWCRFGC----KAADMGAADLTDGSYCWPEGLAHYLENHQVRLPHEIVSHIL 103
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: UPI001BE8BAF1 (hypothetical protein n=2 Tax=Arthrobacter sp. ISL-48 TaxID=2819110 RepID=UPI001BE8BAF1) HSP 1 Score: 85.5 bits (210), Expect = 3.750e-19 Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 4 LVDVGFWADPRDSGDKRPDPAQLVDEEWGGTVEAVAVALYVRSGFLESFELGYSFCRFGCCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV 306
L+ +G+W P+ +G P P Q VD W T E VA Y++ G + +G+S CRF CG K G L+DG +VWP+GLAHY+ EHAVR PD FV
Sbjct: 7 LILIGYWDGPQ-TGRSWPSPEQFVDASWD-TEERDFVAYYLQMGLITRSYMGFSRCRF--CG----KENGNLELSDGHFVWPDGLAHYVVEHAVRLPDRFV 99
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Match: A0A150U157_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150U157_SORCE) HSP 1 Score: 85.9 bits (211), Expect = 2.390e-18 Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 1
Query: 13 VGFWADPRDSGDKRPDPAQLVDEEWGGTVEAVAVALYVRSGFLESFELGYSFCRFGCCGDGSSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSL 318
+G+W + PDPA VDE W + E V Y+R+G G+S+CRF C + G L+DG+++WPEGLAHY+E H VRPPD+ V +L
Sbjct: 7 IGYWRST--AAPLWPDPAWFVDESWASS-ERTRVLAYLRAGVPLWATGGHSWCRFRC----GTHACGSAELSDGRFLWPEGLAHYVERHGVRPPDELVQHAL 101 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig11.1260.1 >prot_Ecto-sp6_S_contig11.1260.1 ID=prot_Ecto-sp6_S_contig11.1260.1|Name=mRNA_Ecto-sp6_S_contig11.1260.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=111bp VLVDVGFWADPRDSGDKRPDPAQLVDEEWGGTVEAVAVALYVRSGFLESFback to top mRNA from alignment at Ecto-sp6_S_contig11:854476..854922- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig11.1260.1 ID=mRNA_Ecto-sp6_S_contig11.1260.1|Name=mRNA_Ecto-sp6_S_contig11.1260.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=447bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:854476..854922- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:854476..854922- >mRNA_Ecto-sp6_S_contig11.1260.1 ID=mRNA_Ecto-sp6_S_contig11.1260.1|Name=mRNA_Ecto-sp6_S_contig11.1260.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:854476..854922- (Ectocarpus species6 EcLAC_371)back to top |