mRNA_Ecto-sp6_S_contig109.1177.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig109.1177.1
Unique NamemRNA_Ecto-sp6_S_contig109.1177.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig109.1177.1 vs. uniprot
Match: D7G025_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G025_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 1.840e-88
Identity = 125/130 (96.15%), Postives = 126/130 (96.92%), Query Frame = 2 
Query:  134 HVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLIGVVTTVTKIAIHGRTPLEWAWPNPRTLTLPTARRPRTHLQRAIKSPGVRPVKRRMMLFNAWC 523
            HVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFL GVVTTVTKIAIHGR PLEWAWPNPRTLTLPTARRPRTHLQ AIKSP V+PVKRRMMLFNAWC
Sbjct:   44 HVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWC 173
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BLAST of mRNA_Ecto-sp6_S_contig109.1177.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.150e-68
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 2 
Query:  134 HVHVAVVQAGLRGCDTTFMMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLIGVVTTVTKIAIHGRTPLEWAWPNPRTLTLPTARRPRTHLQRAIKSPGVRPVKRRMMLFNAWCRL 529
            HVHVAVV+AGLRGCD T MMDVVFGT KK G PLPIL+RW+FCPT  TPG+V++P+LAVWHETAPCFL GV+TTVTKIAI GR PLEWAWPNPR   LPTARRP  HLQ AIK PGV+PVKRR+MLFNA CR+
Sbjct:   44 HVHVAVVEAGLRGCDETCMMDVVFGTPKKEGDPLPILLRWEFCPTQNTPGVVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACCRV 176
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BLAST of mRNA_Ecto-sp6_S_contig109.1177.1 vs. uniprot
Match: A0A6H5KM83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM83_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.610e-59
Identity = 94/114 (82.46%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:  188 MMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLIGVVTTVTKIAIHGRTPLEWAWPNPRTLTLPTARRPRTHLQRAIKSPGVRPVKRRMMLFNAWCR 526
            MMDVVFGT KK G PLPILMRW+ CPTLITPGLVAKPSLAVWHETAPCFL GVVTTVTKIAIHGR PLEWAWPNPR   LPTARRP  HLQ AIK PGV+PV+R ++LFNA CR
Sbjct:    1 MMDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVERGIILFNACCR 114
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BLAST of mRNA_Ecto-sp6_S_contig109.1177.1 vs. uniprot
Match: A0A6H5L242_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L242_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 9.060e-53
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = 2 
Query:  152 VQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLIGVVTTVTKIAIHGRTPLE---WAWPNPRTLTLPTARRPRTHLQRAIKSPGVRPVKRRMMLFNAWCR 526
            V  G  GC TTFM+D+VFGTAKKG+PLPIL+RWDFCPTLI PGLVAKPSLAVWHETAPCFL G+V+TVTKIAIHGR PL+    A P+    T  T   P  +LQ AIK PGV+PVKRR+MLFNA CR
Sbjct:   34 VFLGGLGCGTTFMVDIVFGTAKKGEPLPILLRWDFCPTLIAPGLVAKPSLAVWHETAPCFLDGIVSTVTKIAIHGRNPLDRVGLAKPSGGATTHSTTAPP--NLQCAIKLPGVQPVKRRIMLFNACCR 159
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BLAST of mRNA_Ecto-sp6_S_contig109.1177.1 vs. uniprot
Match: D7FPI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.170e-20
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:    2 CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFAGDWV 121
            CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYF GDWV
Sbjct:   46 CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig109.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G025_ECTSI1.840e-8896.15Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JXU8_9PHAE1.150e-6878.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM83_9PHAE1.610e-5982.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L242_9PHAE9.060e-5370.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI1_ECTSI7.170e-2097.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig109contigEcto-sp6_S_contig109:531376..531922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size547
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348772.0334303-CDS-Ecto-sp6_S_contig109:531375..5317351682348772.0334303-CDS-Ecto-sp6_S_contig109:531375..531735Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 531376..531735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348772.0499108-UTR-Ecto-sp6_S_contig109:531735..5319221682348772.0499108-UTR-Ecto-sp6_S_contig109:531735..531922Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig109 531736..531922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig109.1177.1prot_Ecto-sp6_S_contig109.1177.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig109 531376..531735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig109.1177.1

>prot_Ecto-sp6_S_contig109.1177.1 ID=prot_Ecto-sp6_S_contig109.1177.1|Name=mRNA_Ecto-sp6_S_contig109.1177.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=120bp
MMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLI
GVVTTVTKIAIHGRTPLEWAWPNPRTLTLPTARRPRTHLQRAIKSPGVRP
VKRRMMLFNAWCRLEFCRA*
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mRNA from alignment at Ecto-sp6_S_contig109:531376..531922-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig109.1177.1 ID=mRNA_Ecto-sp6_S_contig109.1177.1|Name=mRNA_Ecto-sp6_S_contig109.1177.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=547bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:531376..531922- (Ectocarpus species6 EcLAC_371)
ATGTCTTCTTGGTACACTCCGGAAAGGTATGCTGACTGGCCGGGATCCTC
GCCTCCCGAGCGCAATACAGCTATGCGGGAAGCACTTCTTTGGCAGCACG
TATTTTGCGGGGGATTGGGTATGAAAACCCATCCATGTACATGTTGCGGT
GGTGCAAGCTGGGCTGAGAGGTTGCGACACAACGTTCATGATGGACGTAG
TGTTTGGTACTGCCAAGAAGGGGAAGCCATTGCCGATCCTGATGCGGTGG
GACTTTTGCCCGACGCTGATCACTCCGGGTTTGGTTGCGAAGCCTTCGCT
TGCAGTCTGGCATGAAACAGCACCTTGCTTCCTCATCGGTGTCGTGACGA
CGGTGACTAAAATCGCCATACACGGACGTACCCCTCTAGAGTGGGCCTGG
CCAAACCCTCGGACCCTAACCCTACCTACGGCACGACGGCCCCGGACTCA
TCTACAACGGGCAATCAAGTCGCCTGGGGTACGGCCAGTCAAGCGTCGAA
TGATGCTGTTCAACGCATGGTGCAGGTTAGAATTTTGCAGGGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig109:531376..531922-

>mRNA_Ecto-sp6_S_contig109.1177.1 ID=mRNA_Ecto-sp6_S_contig109.1177.1|Name=mRNA_Ecto-sp6_S_contig109.1177.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:531376..531922- (Ectocarpus species6 EcLAC_371)
ATGATGGACGTAGTGTTTGGTACTGCCAAGAAGGGGAAGCCATTGCCGAT
CCTGATGCGGTGGGACTTTTGCCCGACGCTGATCACTCCGGGTTTGGTTG
CGAAGCCTTCGCTTGCAGTCTGGCATGAAACAGCACCTTGCTTCCTCATC
GGTGTCGTGACGACGGTGACTAAAATCGCCATACACGGACGTACCCCTCT
AGAGTGGGCCTGGCCAAACCCTCGGACCCTAACCCTACCTACGGCACGAC
GGCCCCGGACTCATCTACAACGGGCAATCAAGTCGCCTGGGGTACGGCCA
GTCAAGCGTCGAATGATGCTGTTCAACGCATGGTGCAGGTTAGAATTTTG
CAGGGCATGA
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