mRNA_Ecto-sp6_S_contig109.1176.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig109.1176.1
Unique NamemRNA_Ecto-sp6_S_contig109.1176.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig109.1176.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 1.400e-107
Identity = 151/174 (86.78%), Postives = 154/174 (88.51%), Query Frame = 1 
Query:  175 GSPEQVPADRELQYLCPSTGCNTNLFLKENIHKDRADYCTPPAGTLAPVPAR------GPVCWLCASEFEVGEVVWAYNIPDVERPACYINWCLNEDACIILKKEGVPVNVRLAGEDDVAKRCSDCKRVDPTILDTDQLIAKSTQPCHFG*HLPPPPPSHDTCDVLYGGEHYRT 678
            GSPEQVPADRELQ+LCP TGCNTNLFLKENIHKDRADYCT PAGTLAPVPAR      G VCWLCASEFEVGEVVWAY  PDVERPACYINWCLNEDACIILK+EG PVNVRLAGEDDVAKRCSDCKR D TILDTDQLIAKSTQPCH    LP PP S+DTCDVLYGGEHYRT
Sbjct:   53 GSPEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADYCTTPAGTLAPVPARLLIKYPGKVCWLCASEFEVGEVVWAYTTPDVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVAKRCSDCKRADSTILDTDQLIAKSTQPCHVDQPLPSPP-SNDTCDVLYGGEHYRT 225
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BLAST of mRNA_Ecto-sp6_S_contig109.1176.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 4.650e-79
Identity = 139/246 (56.50%), Postives = 147/246 (59.76%), Query Frame = 1 
Query:  178 SPEQVPADRELQYLCPSTGCNTNLFLKENIHKDRADY--CTP-PAGTLA----PVPARGPVCWLCASEFEVGEVVWAYNIPDVERPACYINWCLNEDACIILKKEGVPVNVRLAGEDD---VAKRCSDCKRVDPTILDTDQLIAKSTQPCHFG*-------------------------------HLP--------------------------------------PPPPSHDTCDVLYGGEHYRT 678
            SPEQVPADRELQYLCP TGCNTNLFLKENI KDRADY  C    AGT A     +   G VCWLCASEFEVGEVVWA+ IPDVERPAC+INWCLN +ACI+LK +GVPVNVRLAGEDD   V KRC DCKR DPTILDTDQLIAKSTQP H G                                ++P                                      PPPPSHDTCDVLYGGEHYRT
Sbjct:   52 SPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNFNAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAHTIPDVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDANCVGKRCRDCKRADPTILDTDQLIAKSTQPFHVGCAVKHRRELASIFVGIISENIQIAGQPQQTYQNVPEYLQLMSVPTAYATHVEIAAAQQLYNLNIRVTLVGQPFPPPPSHDTCDVLYGGEHYRT 297
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BLAST of mRNA_Ecto-sp6_S_contig109.1176.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 5.040e-43
Identity = 82/121 (67.77%), Postives = 84/121 (69.42%), Query Frame = 1 
Query:  187 QVPADRELQYLCPSTGCNTNLFLKENIHKDRADYCTPPA------------GTLAPVPARGPVCWLCASEFEVGEVVWAYNIPDVERPACYINWCLNEDACIILKKEGVPVNVRLAGEDDV 513
            +  ADRE QYLCP TGCNTNL      HKDRADY   PA            G L   P  G VCWLCASEFEVGEVVWAY IPDVERPACYI WCLN DA IILK+EGVPVN RLAGEDDV
Sbjct:   99 RAKADREPQYLCPGTGCNTNL------HKDRADY---PACRTFSVGTCVWTGLLIKYP--GNVCWLCASEFEVGEVVWAYTIPDVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
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BLAST of mRNA_Ecto-sp6_S_contig109.1176.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.280e-19
Identity = 43/54 (79.63%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  175 GSPEQVPADRELQYLCPSTGCNTNLFLKENIHKDRADYCTPPAGTLAPVPARGP 336
            GS EQVPADRE QYLCP TGCNTNLFLKENIHK RADY  P   TLAP PAR P
Sbjct:   83 GSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADY--PACRTLAPAPARAP 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig109.1176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LET1_ECTSI1.400e-10786.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCU2_9PHAE4.650e-7956.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKW7_ECTSI5.040e-4367.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI3.280e-1979.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig109contigEcto-sp6_S_contig109:493150..495000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size679
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_005490.1
Cds size609
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348771.9539144-UTR-Ecto-sp6_S_contig109:493149..4932181682348771.9539144-UTR-Ecto-sp6_S_contig109:493149..493218Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig109 493150..493218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348771.9638958-CDS-Ecto-sp6_S_contig109:493218..4933171682348771.9638958-CDS-Ecto-sp6_S_contig109:493218..493317Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 493219..493317 -
1682348771.9731936-CDS-Ecto-sp6_S_contig109:494019..4941291682348771.9731936-CDS-Ecto-sp6_S_contig109:494019..494129Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 494020..494129 -
1682348771.9826427-CDS-Ecto-sp6_S_contig109:494574..4946381682348771.9826427-CDS-Ecto-sp6_S_contig109:494574..494638Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 494575..494638 -
1682348771.9917808-CDS-Ecto-sp6_S_contig109:494664..4950001682348771.9917808-CDS-Ecto-sp6_S_contig109:494664..495000Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 494665..495000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig109.1176.1prot_Ecto-sp6_S_contig109.1176.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig109 493219..495000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig109.1176.1

>prot_Ecto-sp6_S_contig109.1176.1 ID=prot_Ecto-sp6_S_contig109.1176.1|Name=mRNA_Ecto-sp6_S_contig109.1176.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=203bp
CLAKAAKPPAPLPTHRSSSTAGSSPPAASPAASTPPPASGAGSSTSAGST
AAAAAAAAGSPEQVPADRELQYLCPSTGCNTNLFLKENIHKDRADYCTPP
AGTLAPVPARGPVCWLCASEFEVGEVVWAYNIPDVERPACYINWCLNEDA
CIILKKEGVPVNVRLAGEDDVAKRCSDCKRVDPTILDTDQLIAKSTQPCH
FG*
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mRNA from alignment at Ecto-sp6_S_contig109:493150..495000-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig109.1176.1 ID=mRNA_Ecto-sp6_S_contig109.1176.1|Name=mRNA_Ecto-sp6_S_contig109.1176.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1851bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:493150..495000- (Ectocarpus species6 EcLAC_371)
TGCCTCGCCAAAGCCGCCAAGCCTCCAGCGCCGCTACCAACGCATCGATC
GTCCTCCACCGCCGGATCCTCTCCGCCGGCTGCTTCTCCGGCTGCTTCTA
CCCCGCCGCCCGCGAGCGGAGCCGGCTCATCTACGAGTGCTGGCTCAACT
GCTGCTGCCGCCGCCGCCGCCGCCGGCTCTCCCGAGCAAGTCCCGGCCGA
CCGCGAGCTGCAATACCTCTGCCCAAGCACCGGTTGCAACACCAACCTCT
TCTTAAAGGAAAATATTCACAAAGACAGGGCCGACTACTGTACCCCGCCT
GCAGGAACTTTAGCGCCGGTACCTGCGCGTGGACCGGTCTTTTGATCAAG
TAACCCGGAAAGGTCTGCTGGCTCTGCGCCTCCGAGTTCGAGGTCGGCGA
AGTGGTGTGGGCATACAACATCCCAGGTGAGAGTTTTCGCATATCTGCAG
CACTACTGTAGTACAATGAATGATCTTCCTTCACGGCTTGGAGTTCGCGC
GATGATGCCCGTGGTCGTTTGTATGAACGCGATTCATATTTTTGGCCGAC
GCTATCATGTGCATACAAAGTTGTTTACGCCGCACAGCATTCGGCGCTCT
TCATCATATTTCGGCGCTCTTCGTGATGAGGTATGAATCATGCCCACGTT
GTATGAACCAACACGATTCATTCCTGATTTCTGTCACAGGAAGATCACAC
AACAACCAAGCAACCTTGCAACATTTTTTTTTTATATGTATGGCTTTCGC
ACCAACTTTGCCCCTCCCTGCGCAGTTGAATGACTCAGAAAATGAACAGA
TCTACTTCAACAAAAAACGCTGCTCATACATGTGCATGTTTTCATCGCCT
TCCCTTCCTGTGATCAAACAGACGTGGAACGCCCGGCGTGTTACATAAAC
TGGTGCCTCAACGAGGACGCCTGCATCATCCTCAAGAAAGAGGGCGTCCC
GGTCAACGTTAGGCTTGCCGGCGAGGACGACGTGAGTTCTTTTATTTTCT
GTTTCACAAAACTATCTACTACCTATTTATGTGTTTCCAGTCCCTACCCC
CTTCTATCTACCTGACCAACACAACACGACACCAATCATTATTGATGTTC
CTGCCCGTTAGTATGCGCACTGCCATGTTAGGCACGTGTTCCACTGTCCT
TTCCTGACCAACACAACACCAGATTTAGTATCCTGCCCGAACATATCCGC
ACGCACATGCTCGGTGCAACGTGTTGCCGCAAGACATTTTTATTTCATCC
TACATGTGCACACCTTCTTTTGGTGTTCGACACCATTACTTTCAGCGTGA
TTATGCGCACATACGTGTTCGTTATGTATGTGTTATTGTCACTCCTGTTG
CGCAAACACTACAGCTGACGCAGGACCCACTTCTTTTTATTTTCATTCGT
AGTGTATGTGCACGTTTTTTTATGTGTTTCACGCAATTTTTTGAAGTGTT
CCTGCCCGTGAATGAATATGCACACGCACATGTTCTTTGGTACGAGCATG
GTTCGTGATCTTTCTGCTGCCAACGCAATTATGCTCACGCAGGACAGCTG
TTTTTTCCACACCATCATTTGCAAATTTCCTCTGTGTTTTGTTCTTAACA
CTATATTTGCTGCGCAACGACATACTGCTGACGCAGGACGCATCTTTTTT
CCCTTCCACATTTTTCTCGTGCAATTCCTACAGGTTGCAAAGCGCTGCAG
TGACTGCAAACGTGTCGACCCGACCATACTGGACACGGACCAGTTAATCG
CCAAGTCCACCCAGCCGTGCCACTTCGGCTAACACCTTCCACCTCCTCCT
CCGTCCCATGACACATGCGATGTTTTGTACGGCGGCGAGCACTACCGAAC
T
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig109:493150..495000-

>mRNA_Ecto-sp6_S_contig109.1176.1 ID=mRNA_Ecto-sp6_S_contig109.1176.1|Name=mRNA_Ecto-sp6_S_contig109.1176.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:493150..495000- (Ectocarpus species6 EcLAC_371)
TGCCTCGCCAAAGCCGCCAAGCCTCCAGCGCCGCTACCAACGCATCGATC
GTCCTCCACCGCCGGATCCTCTCCGCCGGCTGCTTCTCCGGCTGCTTCTA
CCCCGCCGCCCGCGAGCGGAGCCGGCTCATCTACGAGTGCTGGCTCAACT
GCTGCTGCCGCCGCCGCCGCCGCCGGCTCTCCCGAGCAAGTCCCGGCCGA
CCGCGAGCTGCAATACCTCTGCCCAAGCACCGGTTGCAACACCAACCTCT
TCTTAAAGGAAAATATTCACAAAGACAGGGCCGACTACTGTACCCCGCCT
GCAGGAACTTTAGCGCCGGTACCTGCGCGTGGACCGGTCTGCTGGCTCTG
CGCCTCCGAGTTCGAGGTCGGCGAAGTGGTGTGGGCATACAACATCCCAG
ACGTGGAACGCCCGGCGTGTTACATAAACTGGTGCCTCAACGAGGACGCC
TGCATCATCCTCAAGAAAGAGGGCGTCCCGGTCAACGTTAGGCTTGCCGG
CGAGGACGACGTTGCAAAGCGCTGCAGTGACTGCAAACGTGTCGACCCGA
CCATACTGGACACGGACCAGTTAATCGCCAAGTCCACCCAGCCGTGCCAC
TTCGGCTAA
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