mRNA_Ecto-sp6_S_contig109.1171.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig109.1171.1
Unique NamemRNA_Ecto-sp6_S_contig109.1171.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig109.1171.1 vs. uniprot
Match: D7G0S0_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S0_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 8.270e-60
Identity = 187/238 (78.57%), Postives = 188/238 (78.99%), Query Frame = 1 
Query:   82 GGVTRFSRSKXXXXXXXXXXXXXXXQADEPNVDDDVEADLSSVRNVSAGSDPSARASKIVVSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSRRTSGTFGEITPSRPAAASGFGSXXXXXXXXXXXXXXXXXREITITSAMTPAEAMAHVMVVLGGAAAGPIFIYMLQKHMEEHVIERCVKVALTVRSLVIAVVEYNVVLMLLKY 795
            GGVTRFSRSKXXXXXXXXXXXXXXX  +EPNVDDDVEADLSSVRNVSAGSDPSARASK V                                         XXXXXXXXXXXXXXXXXXXXX TSRRTSGTFGEITPSRPAAASGFG XXXXXXXXXXXXXXXX REITITSAMTPAEAMA VMVVLGGAAAGPIFIYMLQKHMEEHV ER VKVALTVRSLVIAVVEYNVVLMLLKY
Sbjct:   19 GGVTRFSRSKXXXXXXXXXXXXXXXXXEEPNVDDDVEADLSSVRNVSAGSDPSARASKSV------GRQSTGAAPQGSSSQTVPAPSTRRKSAPPVTGAGSXXXXXXXXXXXXXXXXXXXXXXTSRRTSGTFGEITPSRPAAASGFGXXXXXXXXXXXXXXXXXDREITITSAMTPAEAMARVMVVLGGAAAGPIFIYMLQKHMEEHV-ERFVKVALTVRSLVIAVVEYNVVLMLLKY 249
[Close]
BLAST of mRNA_Ecto-sp6_S_contig109.1171.1 vs. uniprot
Match: D7FJ81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ81_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.400e-31
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 MASRGSGSSTRRAIPDAIEAGWIARTGGGVTRFSRSKXXXXXXXXXXXXXXXQADEPNVDDDVEADLSSVRNVSAGSDPSARASKIVVSGG 273
            MASRGSGSSTRRA P+AIEAGWIARTGGGVTRFSRSKXXXXXXXXXXXXXXXQA+EP VDDDVEADLSSVRNVSAGSDPSARASK VVSGG
Sbjct:    1 MASRGSGSSTRRATPNAIEAGWIARTGGGVTRFSRSKXXXXXXXXXXXXXXXQAEEPFVDDDVEADLSSVRNVSAGSDPSARASKSVVSGG 91
[Close]
BLAST of mRNA_Ecto-sp6_S_contig109.1171.1 vs. uniprot
Match: D7FVS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS2_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.190e-8
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:  626 TLWWFSAELRQAQSSSTCFRSIWRNT 703
            TLWWFSAELRQAQSSSTCFRSIWRNT
Sbjct:  123 TLWWFSAELRQAQSSSTCFRSIWRNT 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig109.1171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0S0_ECTSI8.270e-6078.57Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FJ81_ECTSI1.400e-3194.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVS2_ECTSI4.190e-8100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig109contigEcto-sp6_S_contig109:155369..157990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size798
Hectar predicted targeting categoryother localisation
Exons3
Cds size798
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348771.6309578-CDS-Ecto-sp6_S_contig109:155368..1555271682348771.6309578-CDS-Ecto-sp6_S_contig109:155368..155527Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 155369..155527 +
1682348771.6382208-CDS-Ecto-sp6_S_contig109:156465..1570121682348771.6382208-CDS-Ecto-sp6_S_contig109:156465..157012Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 156466..157012 +
1682348771.645351-CDS-Ecto-sp6_S_contig109:157898..1579901682348771.645351-CDS-Ecto-sp6_S_contig109:157898..157990Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 157899..157990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig109.1171.1prot_Ecto-sp6_S_contig109.1171.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig109 155369..157990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig109.1171.1

>prot_Ecto-sp6_S_contig109.1171.1 ID=prot_Ecto-sp6_S_contig109.1171.1|Name=mRNA_Ecto-sp6_S_contig109.1171.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=266bp
MASRGSGSSTRRAIPDAIEAGWIARTGGGVTRFSRSKSKGKGKKHASPPP
QAQADEPNVDDDVEADLSSVRNVSAGSDPSARASKIVVSGGGAGRQSTGA
APQGSSSQPVPAPSTRRQSAPPVTGAGSGSGGGSSSAAPAASSAATSSQS
TSRRTSGTFGEITPSRPAAASGFGSGAAPVAADAASGSGSSAREITITSA
MTPAEAMAHVMVVLGGAAAGPIFIYMLQKHMEEHVIERCVKVALTVRSLV
IAVVEYNVVLMLLKY*
back to top

mRNA from alignment at Ecto-sp6_S_contig109:155369..157990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig109.1171.1 ID=mRNA_Ecto-sp6_S_contig109.1171.1|Name=mRNA_Ecto-sp6_S_contig109.1171.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2622bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:155369..157990+ (Ectocarpus species6 EcLAC_371)
ATGGCGTCAAGAGGGTCGGGTTCATCAACCCGTAGGGCTATCCCTGATGC
CATAGAGGCGGGCTGGATCGCGAGGACAGGGGGGGGGGTAACCCGCTTCT
CCCGCTCCAAGTCTAAGGGAAAGGGGAAGAAGCATGCTTCGCCACCGCCG
CAGGCTCAAGTAAGTTCGCGCGATACCGATGGGGTTAGTGCAGCTGCTGT
TGAGGAGGCTGAGCGATATCTTGGTCCATTGTCGGATTTGATGGATTCAC
CAGTGAGCGGTCACCACCAAGGCCGGCGCCTGCGCAAGCTCAGGTCCAAG
ATGGCCGTTGAAGACGAAGCACCCAACGTGCGTGCGTAAATGCGCGGCTA
CCGTTTTTTTTTTTTTTTAGTTTTCGTACCATCATTACATGGCCTTGTCA
AATAGCTGGACCGTCCCTATGGTGTCATGTACCCGCACCGATAGGTACGG
CTGTCCTTTCTTTTACAGTCGCGACCGCTCTTCCTTTTAGTCGTGTACTC
CCTCTCTACGTGGTAGTTGAAAGGACGACGTGTCGAGAGCATGAAGCACG
TATGCATGATGGCCTGCCCATAATTTCCAAACACCAACCATCTACAAGCA
CAGCATTTGGAACTTACATGCACCTGTGTCTGGTTCGCTCTGGACCCAAT
TTGATGCAGATGAACTGCAGAGGGGCATGCGTACTTTCCTACAGGCTGTT
GCGGAGTTTGAGCTAGGTTCGGGGCTCTTGCCTTGATGGATGTGCTGGAT
GAGGAAACCTGTAGCTTTCACCAACGACTGTTTTTTCAAGGCAGCACAAT
ATCTCGCGTGGTTGAATTTAGAGTAAAAAGTAGAGTAAAAAGGAATAATT
AATGAAGACTATTGTACCCTTTCGAGATATATTAGTTGCGCAAGAGCGAA
CAGCCAACAACGACAAGTACGCTTCGAAGATTTCAGATCGCATTCCGGCT
AACCCCGAATCTTGAGTCCTCTCAACGTCCTCCCGTCATAGCCGCATTAT
GACGCAATACGTTGTGCCCAGCCACATCGCAAAACTTGCTCTAATTTTTT
TGTCTAACCCGCCCTTGTCGGGTTGCTTGTGTCTTTGTCTGTCCCAGGCG
GATGAGCCCAATGTCGATGATGATGTTGAGGCGGACCTGTCTTCCGTCAG
GAACGTCTCCGCAGGCTCGGATCCGTCGGCCAGGGCGTCGAAGATTGTTG
TTTCCGGCGGTGGTGCTGGTCGGCAGTCGACGGGGGCTGCCCCGCAGGGT
TCGTCTTCGCAGCCGGTACCTGCCCCGTCCACACGTCGCCAGTCCGCGCC
CCCCGTTACCGGTGCTGGTAGCGGGAGCGGCGGCGGCAGCAGCAGTGCCG
CGCCCGCAGCATCCTCCGCCGCAACATCTTCGCAGAGCACCTCACGCAGG
ACTTCTGGTACGTTTGGCGAGATCACACCCTCGCGCCCTGCTGCTGCCTC
CGGCTTCGGTTCTGGTGCTGCCCCCGTCGCTGCCGATGCTGCCTCCGGCT
CCGGTTCTTCTGCTCGTGAGATCACGATAACGTCCGCCATGACCCCGGCT
GAAGCCATGGCGCACGTTATGGTGGTTCTCGGCGGAGCTGCGGCAGGCCC
AATCTTCATCTACATGCTTCAGAAGCATATGGAGGAACACGTGAGTAAAA
TAGGTCTTCCCTGAGAAAATAATCACTTTTTGTGGGACAGATATGTTTTC
ATTTTGGATGAACGAGTCATTTACAAACATTAAATTTGGACATCCAGCAC
GTGTTTAACAATTGGGTCTTTCCCATAAAGTGGACGACGATAGAATAAGG
GGTCAACGTTATGGGTCTAACTCGACGTCCGCCCTCTTGCGTAGACACAC
CTCTCTCATAGTTCCCACTATATTTTCCATGACGTGGAGGCGTAGCCAGG
ACTCCTACATATACCTTGATGTGTATTGGAACCCTTCCAACCGTCACACA
CACATGGTCAATCGAGTACTTCCCATCATGCAGCAACGAAAAGAGTTGCA
GTTTTCATCCTTGACATGAGGCCGAGGGTCTTGGACATGAAATATTGCGG
CGTGCCGCACTCAACCTGTCGTCTGTTTGATGTTGTTCGATTCGAACAAA
ATGTATTCGTCACAGACGGCAATCCACACTCTCCCTCCTGCCCCGCTTGA
TGTCCCGCCCGCCGTTGTTTTTCCCACTACATCCGTCGCAGGTAAAGCTG
GTTTTGTCCCCACTTCTCGGCGGCAGCTCGTCGGTCGTTGCGGGTTCTCC
GGGAAGTGCGACCCAGCCTGTCAGGCAGCCAGGAGGCTCAGTACGTGGTG
GCTTCACTGCTGCCATCTCCGTGTTGTGGAGTTTTGCACTCATCGGGCCC
CAGCAGCTGGACTACTGTACGGGGCATGGGCGGACGGACCCTGACACGAA
CGTATTCTGTAGGATGTCCTACATGTTCTGGGAGCCCACCGGTCTACGAT
ACGAGCCCGTCATGAGTGAGTGTTGTGTGTTTTTTTGGGTCATTCGAGTA
AGTTTGTGTGTGAACTGATTCACTCACAAGTAGAGCGATGCGTCAAAGTT
GCCCTGACCGTAAGGTCTCTAGTCATCGCGGTGGTCGAATACAACGTTGT
GCTTATGCTGCTGAAATATTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig109:155369..157990+

>mRNA_Ecto-sp6_S_contig109.1171.1 ID=mRNA_Ecto-sp6_S_contig109.1171.1|Name=mRNA_Ecto-sp6_S_contig109.1171.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:155369..157990+ (Ectocarpus species6 EcLAC_371)
ATGGCGTCAAGAGGGTCGGGTTCATCAACCCGTAGGGCTATCCCTGATGC
CATAGAGGCGGGCTGGATCGCGAGGACAGGGGGGGGGGTAACCCGCTTCT
CCCGCTCCAAGTCTAAGGGAAAGGGGAAGAAGCATGCTTCGCCACCGCCG
CAGGCTCAAGCGGATGAGCCCAATGTCGATGATGATGTTGAGGCGGACCT
GTCTTCCGTCAGGAACGTCTCCGCAGGCTCGGATCCGTCGGCCAGGGCGT
CGAAGATTGTTGTTTCCGGCGGTGGTGCTGGTCGGCAGTCGACGGGGGCT
GCCCCGCAGGGTTCGTCTTCGCAGCCGGTACCTGCCCCGTCCACACGTCG
CCAGTCCGCGCCCCCCGTTACCGGTGCTGGTAGCGGGAGCGGCGGCGGCA
GCAGCAGTGCCGCGCCCGCAGCATCCTCCGCCGCAACATCTTCGCAGAGC
ACCTCACGCAGGACTTCTGGTACGTTTGGCGAGATCACACCCTCGCGCCC
TGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCGTCGCTGCCGATG
CTGCCTCCGGCTCCGGTTCTTCTGCTCGTGAGATCACGATAACGTCCGCC
ATGACCCCGGCTGAAGCCATGGCGCACGTTATGGTGGTTCTCGGCGGAGC
TGCGGCAGGCCCAATCTTCATCTACATGCTTCAGAAGCATATGGAGGAAC
ACGTGATAGAGCGATGCGTCAAAGTTGCCCTGACCGTAAGGTCTCTAGTC
ATCGCGGTGGTCGAATACAACGTTGTGCTTATGCTGCTGAAATATTAG
back to top