mRNA_Ecto-sp6_S_contig108.1133.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1133.1
Unique NamemRNA_Ecto-sp6_S_contig108.1133.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig108.1133.1 vs. uniprot
Match: A0A6H5K8D7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D7_9PHAE)

HSP 1 Score: 493 bits (1270), Expect = 9.850e-173
Identity = 303/352 (86.08%), Postives = 318/352 (90.34%), Query Frame = 3 
Query:   63 MVLLRCVKPVLGLVVLLLLCCNGSAKKSKRWSYPRPQWPVPGHRMDAEPCRLFVWNVASAARFCECTRHLDSVADQTLWEDSHGQLWLRVRFSSPLLRLFPCQQHSLTRCAKCGHDYRAHVEHTLKRHKDGNYDKFIREHARRVGGRGAQDYRGGSVFSDQKRTSRERVDASVGSLGSLSGNGNKSGASNANGGISSGGIGNGAGWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAVHDEKVKAEAAQEKRXXXXXXXXXXXXXXXXXXXXSSR-VREDLDAERYGDGGERLRSRGGVADXXXXXXXXXXXXXXXXXXXXXXXSRRKGETEDEVALRHLRAFDRIEYI 1115
            MV LRC +PV+GL+V+LLLCCNGSAKKSKRW+YPRPQWPVPGHRMDA PCR F+W+VASAARFCECTRHL+SVADQTLWEDSHGQLWLRV FSSPLLRLFPCQQHSLTRCAKCGH+YRAHVEHTLKR KDG+YDKFIR+HARRVGGRGAQDYRGGSVFSDQKRTSRERVDASVGSLGS SGNGN S           GGIGNG+GWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAVHDEKVKA AAQEKRXXXXXXXXXXXXXXXXXX  +SR VREDLDAERYGDGG       G++D  XXXXXXXXXXXXXXXXXXXXX  RKGETEDEVALRHLRAFDRIEYI
Sbjct:    1 MVRLRCFQPVVGLIVILLLCCNGSAKKSKRWTYPRPQWPVPGHRMDAVPCRWFLWDVASAARFCECTRHLESVADQTLWEDSHGQLWLRVPFSSPLLRLFPCQQHSLTRCAKCGHEYRAHVEHTLKRRKDGDYDKFIRDHARRVGGRGAQDYRGGSVFSDQKRTSRERVDASVGSLGSSSGNGNNSXXXXXXXXXXXGGIGNGSGWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAVHDEKVKAGAAQEKRXXXXXXXXXXXXXXXXXXRTTSRRVREDLDAERYGDGG-------GLSDRGXXXXXXXXXXXXXXXXXXXXXXXRKGETEDEVALRHLRAFDRIEYI 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8D7_9PHAE9.850e-17386.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:137468..142149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1118
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003510.1
Cds size1056
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.568098-CDS-Ecto-sp6_S_contig108:137467..1381181682348767.568098-CDS-Ecto-sp6_S_contig108:137467..138118Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 137468..138118 -
1682348767.5777965-CDS-Ecto-sp6_S_contig108:139432..1395961682348767.5777965-CDS-Ecto-sp6_S_contig108:139432..139596Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 139433..139596 -
1682348767.5855784-CDS-Ecto-sp6_S_contig108:141286..1414231682348767.5855784-CDS-Ecto-sp6_S_contig108:141286..141423Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 141287..141423 -
1682348767.5931115-CDS-Ecto-sp6_S_contig108:141983..1420871682348767.5931115-CDS-Ecto-sp6_S_contig108:141983..142087Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 141984..142087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.6009176-UTR-Ecto-sp6_S_contig108:142087..1421491682348767.6009176-UTR-Ecto-sp6_S_contig108:142087..142149Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 142088..142149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1133.1prot_Ecto-sp6_S_contig108.1133.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 137468..142087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1133.1

>prot_Ecto-sp6_S_contig108.1133.1 ID=prot_Ecto-sp6_S_contig108.1133.1|Name=mRNA_Ecto-sp6_S_contig108.1133.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=352bp
MVLLRCVKPVLGLVVLLLLCCNGSAKKSKRWSYPRPQWPVPGHRMDAEPC
RLFVWNVASAARFCECTRHLDSVADQTLWEDSHGQLWLRVRFSSPLLRLF
PCQQHSLTRCAKCGHDYRAHVEHTLKRHKDGNYDKFIREHARRVGGRGAQ
DYRGGSVFSDQKRTSRERVDASVGSLGSLSGNGNKSGASNANGGISSGGI
GNGAGWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAVHDEKVKAEA
AQEKRENKRRRRGDGGGATARRRTSSSRVREDLDAERYGDGGERLRSRGG
VADRGGRARRGGSRGSRGSGGGRGSSSRRKGETEDEVALRHLRAFDRIEY
I*
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mRNA from alignment at Ecto-sp6_S_contig108:137468..142149-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1133.1 ID=mRNA_Ecto-sp6_S_contig108.1133.1|Name=mRNA_Ecto-sp6_S_contig108.1133.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4682bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:137468..142149- (Ectocarpus species6 EcLAC_371)
GGTGTAGCGTGTAGCCACGACAGCAGTTTTGCAGGTTGTGAGCAAGCGCG
GAGAGGAGTGAAATGGTTCTGCTGCGTTGTGTTAAGCCTGTCCTCGGCTT
GGTCGTCCTTCTTCTCTTGTGTTGCAATGGCTCGGCCAAGAAGTCCAAGC
GCTGGAGCTACCCAAGGTGCTCTTGATGTAGATTGCACAACTGTGCTCTA
GTACTATGAATGACCCATCCGACCGATCAGCAGCAACAGCAGCGGAGAGA
GTTGGGGCGCTTTCGTACCGCCTAACCCTCGGTTGCGCGTGCTCTTGATC
AGCGTGGTAGAGTAACGCTTTGTGCGGCTGGAGATGTGCCCGCAACTTGA
ACAAGTACTGCTGTGTCTGTCAACTTGAACAAGTCAAAACCTCGGGGGGG
TGCATCGTCGCGATGGGTGTTGAGAGTTCGGAGCGGAGGAATATACGGTA
TAAGTGAAGCATCTGCTGTGTACATAGATATTTTCATGCAGACATGAGTA
TGTTCGGTGCCGCAGATCACCCACGAGGCCAAGGATCGGTTGAGAGGTTG
GGGAAATTTCTGGCGGAGTTGTGTACAGGTCCTGGCCTGACCGGTGGGAC
AAGTCCGAATCACCCTCCGTCGATCTGGATCAAGCGTTGGATGGCTTCAT
CTCTGCCCTGCGTATATGCACGCCGTCTTAACGCCATGTTCATGATCATG
GCCCTGTGTCGCCCCGCTCACTCCAGACCACAATGGCCGGTGCCAGGGCA
TCGCATGGATGCCGAGCCTTGCCGGTTGTTCGTTTGGAACGTTGCGTCTG
CCGCACGGTTCTGCGAGTGCACCAGGCATTTGGATTCCGTCGCCGATCAA
ACCTTGTGGGAAGGTGAGAGCGAACACGGCGGTCGGTCGCAAGTCGGACC
TTGCCCTTGGCGCCTTTCAACACAGCAGTTAGCGCCCGCGATTAAAAAAG
AAGCCTTTAATAAACTAAGGCTCAGATTTTGGCAACAAAAAAGAAAAACT
GAGTAAGAAACACGCCTCAGTCGTGGATCCTACACTACAGAAGTATATAT
TGTTCCTACAAGAAGGCTTGGCTTGACGGTGGTGACGAAATAACGGATTG
AGCCTCGACCCTCATTTAACGTATCTTAAACACTGGCGATATCTGCTGTA
GCCTGATGCTCTTTGACCCATGCACCCCTTTCGAGACGGAGCGATTGAAA
CGGGGTGTTCACACAGTCCAAAGGGGCGGCTGGGGGAAGCCGCGGAATCT
TTGATATACACTTGTGTGTCCATTCAAACAGTGTCACGCGGAACCCGTTT
TAGCAGGTACCCGAGTAGTACCAGTCGGGTTTTCCGGCCATTCGGTATTC
ACGCCCGATTATTTTGGTCAACGAGAATTTTCCATTTTTTGTTTTGGGGC
GATTGGTATTCTCGTATTCTCCCGCTCCCGGACGAAATCCACTCAGGACA
TCCGTCCTTCCTCCGTGATGGCCACATCCGTCCTTCCTCCGTGATGGCCG
GATCGCCACGAAACCTTGAAGGCCGTACGAACCACATCTATCGATGTGCT
CGAAACCTGTTTGTGATTGGGTGCTGTGGGATCGTTGTGAGCCGAGAAAA
CTTCATTTTGTGGACCAAACCAAGAATCCGGGTGTTGTTGTTGTTGTTGT
TGTTGTTGTCTTCACATTAAACTCGTGTCAGTTGCTAATCCCAAAATCTT
GCAAAGACTCGGTCCGTGGTACCAAAAATGCTAGCGCCATCAGAAGATCT
CAAGAACACGCACACTAGTAGCAAGAAAAGGGTACACAAGCCCGAAGAGG
GTGTGGGGAGATTTTTCCCGTTGATTTTCCCCTTTTTTTCAGTCAATACA
GCCGTGGGCGAAACCTCCACTCGGACATTTGGTGGTTTGAGCTTTGGATT
AGAGGTGGGGCTAGTGGTCCTACCGGCGCGAAAAGAAGAGGCAAACGAAG
AAATGCGCGCTTTCTGTCGGAGCAACTCACACCCCAACTGACCCGCAAAA
TGCGCGATTTGGTGTATCCATTGAGCTACCGGGCACGTATACCCTCTCGC
CCGCCCACGCGGCACAATTCCGTGTTTTTCTTCGGGCTGGTTCTCCAATT
TTGTTATACAACGTTTCCAGCATGGTGCCCGTTTTGCCGGTTCGCCCCTA
AAAGTCGTGATCACCCCCCGATCCCTAAATTACTTCACAACTTAAAACTC
GTGCAGATTCATTCCTCCTCGTGTTTTTCGGTAAAAACGTGTTGGCTGGT
CTCATCTACTCTCACTGGACATGCTGCCGTGATGTGGAGGCTAGGCCACA
CTTTCTCAGTTCCTGGATTGTCCCACCGGTACCGGTTTCTCTCACCTTCT
GCACGCTTTTTGCTAAGGCCTACTATCGAGCACTAGGTTCGTATGCGGGT
GCAACCGTTCCGTGCCCCACCTCCACCCTCTGTACGACGGTCCACAGGAC
GGGTGTATCTGTCGTTGAAAACCCCCGCCTCCTAAACACCGACAGCACTG
AATTCTCTTTCCCCTCGATGTTGTTCCACTCGTCGCGGCCGTGTTGCGTG
CAGACTCGCACGGACAACTCTGGCTGCGGGTACGGTTCTCGAGCCCTCTC
CTGCGGCTCTTCCCGTGCCAGCAGCACAGCCTCACGCGCTGCGCCAAGTG
CGGGCACGACTACCGTGCCCACGTCGAGCACACCCTCAAGAGGCACAAGG
ACGGGAACTACGACAAGGTGGGATGCCGTGCTATTTGTGTCGGCCCTGGG
GGGTTTGGTAGGCAAGCTCCCCCCCCGCCCGGGCATGTGCGCTCATCATC
GGTATGTTCCCGTTTCTCAATGTTTGGGGACTCTGTGCGCATGTATTAGG
ATTTCTAGCTTGTCTCGCGCGAGTTTTTTGAAACGGCAAGCATTGGAGAT
TCACGGTAGATGGGATGGACGCGTCGGTCGGGGTCGCCACCTAAGGCCGG
TAGTGCCGTTAGTGCTCGTGCTTCTCAACTAGGCTCAACGCGTGAGATTT
TGTGATATTAAGGTTGGGGATAACCATCAGGGTGCCCCACCCCTGCGCGC
TTAACCCCCCCCCACTCTTTGCCCTTCCCCCCCCCGGTGTTTGCCGTCGG
GGTCGGGTTTCTGTCGCTTGGCAACGACGTCGTAAAACAGGCCGCCGCCC
CCGGTGTTTACCATCGGGGTTCGGTTTTCGTCGCTTGGCAACGACGTTGT
AAAACAAGCCAATTTACTTCGCGAGCTCGGCAACGAGGTTACCGGGGGGG
TTTTACCTCTATTTTTTTTTTGCAGTAACCATGAATGGTGGTCGAGTAGA
TCATGTTGTGCGGGGTCGAGAACCCTCACTCCGCGCAAAGGGGATAATCG
CACCACGTTGTGTTAAAATGGTAAAGCATACTCGAGGCAGTTTCACAGTG
CTTACAACTGTCTCTGGAAGTGAGAGCACCAGGAAATAAATTAAGTCATA
CGCAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACACCC
TCAGCAGGATGCAGCTCACCCTTCACGCGACTCGCTGAATACCTCACGGC
GCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGC
TCCGTCCCGGCTTTGTCGGGATGCGAGGTCAATAGTATAACGACTACGGC
ATTCACGACCCCCCCCCCCACCCCACCCCACCCTTCGCCCGACATGTGGT
GTGTTATCCCGGTTCGTACGACGGAATTTGCACTATCACTACGAGTGTGT
TCTCTTCTGTTGGGAAGCACAAGGTCGAATTGCACTTGATGCTGCCTTGC
TCACTCCCGTCTCGAGAGGGATTGCAAAGGCCACTATTATAGTAGAGTGT
TAACGGTGCACGCAGTGCCCGCTCATTCCCTCACCTAGGGGGACGCTACT
TCGTAATTGTAGCCTACATAGGCGCACCGTCCCACCCTTGAAGCGACACC
ATGCAGACTGTTTTACGACAACGCTGCGTATGACGATTTCAACACCTCCT
CACTCCCGATCCCGTCCATGTTCCGCCTCAGTTCATCCGGGAACACGCGC
GGCGGGTCGGAGGAAGAGGAGCTCAGGACTACCGAGGGGGGTCCGTTTTT
TCGGATCAGAAGAGGACCAGTCGAGAACGCGTGGACGCCAGCGTGGGAAG
CCTGGGCAGCTTGAGCGGCAACGGCAACAAATCGGGCGCCAGCAACGCGA
ACGGCGGTATCAGCTCCGGCGGCATCGGCAACGGTGCCGGTTGGAGAAGA
CGGCTGGCGGTGTTGGCGGAGGCGCAGCGGGCCGCCCTGCTGCAGACGTC
TGGCATCGCCGTCACCTCCGAGACGGCGCGGTCCGCGTTCAAGGCCGTGC
ACGACGAGAAGGTGAAGGCCGAAGCCGCCCAGGAAAAGCGGGAAAACAAG
CGTCGCCGGCGCGGCGACGGCGGTGGTGCGACGGCGAGGAGGAGGACGAG
CTCGAGTCGAGTCCGCGAGGACTTGGATGCGGAGAGGTACGGGGATGGGG
GGGAGCGCCTGCGGTCAAGGGGTGGTGTAGCGGACCGAGGGGGGCGGGCT
CGAAGAGGCGGTTCCCGGGGTAGCCGCGGCAGTGGCGGTGGCAGGGGGAG
TAGTAGCCGCAGGAAGGGGGAGACCGAGGACGAGGTCGCCCTGCGGCACC
TTCGTGCGTTTGATCGAATCGAGTACATTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:137468..142149-

>mRNA_Ecto-sp6_S_contig108.1133.1 ID=mRNA_Ecto-sp6_S_contig108.1133.1|Name=mRNA_Ecto-sp6_S_contig108.1133.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:137468..142149- (Ectocarpus species6 EcLAC_371)
ATGGTTCTGCTGCGTTGTGTTAAGCCTGTCCTCGGCTTGGTCGTCCTTCT
TCTCTTGTGTTGCAATGGCTCGGCCAAGAAGTCCAAGCGCTGGAGCTACC
CAAGACCACAATGGCCGGTGCCAGGGCATCGCATGGATGCCGAGCCTTGC
CGGTTGTTCGTTTGGAACGTTGCGTCTGCCGCACGGTTCTGCGAGTGCAC
CAGGCATTTGGATTCCGTCGCCGATCAAACCTTGTGGGAAGACTCGCACG
GACAACTCTGGCTGCGGGTACGGTTCTCGAGCCCTCTCCTGCGGCTCTTC
CCGTGCCAGCAGCACAGCCTCACGCGCTGCGCCAAGTGCGGGCACGACTA
CCGTGCCCACGTCGAGCACACCCTCAAGAGGCACAAGGACGGGAACTACG
ACAAGTTCATCCGGGAACACGCGCGGCGGGTCGGAGGAAGAGGAGCTCAG
GACTACCGAGGGGGGTCCGTTTTTTCGGATCAGAAGAGGACCAGTCGAGA
ACGCGTGGACGCCAGCGTGGGAAGCCTGGGCAGCTTGAGCGGCAACGGCA
ACAAATCGGGCGCCAGCAACGCGAACGGCGGTATCAGCTCCGGCGGCATC
GGCAACGGTGCCGGTTGGAGAAGACGGCTGGCGGTGTTGGCGGAGGCGCA
GCGGGCCGCCCTGCTGCAGACGTCTGGCATCGCCGTCACCTCCGAGACGG
CGCGGTCCGCGTTCAAGGCCGTGCACGACGAGAAGGTGAAGGCCGAAGCC
GCCCAGGAAAAGCGGGAAAACAAGCGTCGCCGGCGCGGCGACGGCGGTGG
TGCGACGGCGAGGAGGAGGACGAGCTCGAGTCGAGTCCGCGAGGACTTGG
ATGCGGAGAGGTACGGGGATGGGGGGGAGCGCCTGCGGTCAAGGGGTGGT
GTAGCGGACCGAGGGGGGCGGGCTCGAAGAGGCGGTTCCCGGGGTAGCCG
CGGCAGTGGCGGTGGCAGGGGGAGTAGTAGCCGCAGGAAGGGGGAGACCG
AGGACGAGGTCGCCCTGCGGCACCTTCGTGCGTTTGATCGAATCGAGTAC
ATTTGA
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