mRNA_Ecto-sp6_S_contig108.1130.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1130.1
Unique NamemRNA_Ecto-sp6_S_contig108.1130.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig108.1130.1 vs. uniprot
Match: A0A6H5K8D8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D8_9PHAE)

HSP 1 Score: 509 bits (1311), Expect = 1.570e-177
Identity = 260/277 (93.86%), Postives = 267/277 (96.39%), Query Frame = 1 
Query:    1 MESAERYLPRPSRPPSLPRATTRRPIKRQRRRIALLAEFAAAPPSFLLQVVVVASAISSALAQLSSDAELSVGSVQDALTCNVTLYDQWYDSPYSGALLEDLVDFWIFPDAELTNGQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGRMLCETFGQCGAWNCRISDFMCPRYEYNKQTVPHRGKGDCSGAKRAGGRGSREYATTVIPPLSVAVFVAAAVSRIGL 831
            MESAERYLPRPSR  SLPRATTRRP+KRQRRRI LLAE AAAP SFLLQV+ VASA+SSALAQ SSDAEL+VGSVQDALTCNVTLYDQWYDSPYSGALLEDLVDFWIFPDAELTNGQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGRMLCETFGQCG WNCRISDFMCPRYEYNKQTVPHRGKGDCSGA +AGGRGSR+YATTVIPPLSVAVFVAAA SR+GL
Sbjct:    1 MESAERYLPRPSR--SLPRATTRRPLKRQRRRIGLLAESAAAP-SFLLQVLFVASAMSSALAQPSSDAELNVGSVQDALTCNVTLYDQWYDSPYSGALLEDLVDFWIFPDAELTNGQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGRMLCETFGQCGVWNCRISDFMCPRYEYNKQTVPHRGKGDCSGATKAGGRGSRKYATTVIPPLSVAVFVAAAASRLGL 274
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BLAST of mRNA_Ecto-sp6_S_contig108.1130.1 vs. uniprot
Match: A0A835Z9M4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M4_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.790e-58
Identity = 88/163 (53.99%), Postives = 116/163 (71.17%), Query Frame = 1 
Query:  241 CNVTLYDQWYDSPYSGALLEDLVDFWIFPDAELTNGQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGRMLCETFGQCGAWNCRISDFMCPRYEYNKQTVPHRGKGDCSGA 729
            C++ LY  WY+  Y G L ++  +FWIF  AEL+NGQA+E  ++ C++ ++ LRLDRAGR+GPV++ +I+DVMC++EC  SD++R  AM    C CL LSTQ   P Y   GDWC  NSGR+LC TF QCG W CR+ DFMCPR+EYN+  V  RG G+CSGA
Sbjct:   36 CSLDLYQAWYNKAYEGPL-QNTPNFWIFSSAELSNGQAMEKAATKCKLKLEQLRLDRAGRHGPVEEWWIFDVMCSDECVQSDALRRAAMAACGCDCLALSTQAGAPSYRAAGDWCAHNSGRLLCATFYQCGTWACRVGDFMCPRFEYNQYRVAFRGPGNCSGA 197
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BLAST of mRNA_Ecto-sp6_S_contig108.1130.1 vs. uniprot
Match: A0A482SVE4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVE4_9ARCH)

HSP 1 Score: 166 bits (421), Expect = 1.200e-44
Identity = 78/175 (44.57%), Postives = 110/175 (62.86%), Query Frame = 1 
Query:  238 TCNVTLYDQWYDSPYSGALLEDLVDFWIF---PDAELTNGQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGRMLCETFGQCGAWNCRISDFMCPRYEYNKQTVPHRGKGDCSGAKRAGGRGS 753
            TCN+T Y QW +  Y G L  D   FW++   P   L N  A+ +    C+ M ++L L R+GR GP+  +  Y +MC + C  +D++ E AM ++ C+CLELSTQP +  +  EGDWC +N+ R+LC+  G CG WNCRI DFMCPRYE+NK+ +P++G G C   + A  RGS
Sbjct:   33 TCNLTRYQQWLNERYIGFLASDSA-FWMYQTQPQIVLNNFFAMSLALRGCQRMFESLYLYRSGRMGPINIQDSYKIMCRDYCIENDNLHEIAMNITGCSCLELSTQPGDISFTKEGDWCSQNTARLLCDIVGYCGVWNCRIDDFMCPRYEWNKKIIPYKGPGTC--IRGAAARGS 204
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BLAST of mRNA_Ecto-sp6_S_contig108.1130.1 vs. uniprot
Match: A0A485LNX5_9STRA (Aste57867_23263 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNX5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.600e-22
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:  310 DFWIFPDAELTNGQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGRMLCETFGQCGAWNCRISDFMCPRYEYNK 687
            D  ++ D    +G+A+ V+SSTC   +  L+   AGR GPV    +  VMC++ C  SD + + AM+ S C C +LST           D+C +NS R+LC   G CG W C++ DFMCPRY++++
Sbjct:   65 DLSVYADYLANDGKAMFVLSSTCEASIQYLKQRLAGRFGPVLQSDMEIVMCSDACVQSDVMHQGAMDRSHCLCSQLSTDS-----FISNDFCRQNSARLLCSILGVCGTWECKMEDFMCPRYDWDR 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K8D8_9PHAE1.570e-17793.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9M4_9STRA1.790e-5853.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SVE4_9ARCH1.200e-4444.57Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485LNX5_9STRA5.600e-2238.89Aste57867_23263 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:121577..125617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score449.1
Seed ortholog evalue1.5e-123
Seed eggNOG ortholog2880.D7FY74
Model size1593
Hectar predicted targeting categorysignal anchor
Exons4
EggNOG OGs2CP61@1,2S42B@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_003540.1
Cds size834
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.3617957-UTR-Ecto-sp6_S_contig108:121576..1223351682348767.3617957-UTR-Ecto-sp6_S_contig108:121576..122335Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 121577..122335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.3747663-CDS-Ecto-sp6_S_contig108:122335..1224981682348767.3747663-CDS-Ecto-sp6_S_contig108:122335..122498Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 122336..122498 -
1682348767.3829339-CDS-Ecto-sp6_S_contig108:122941..1230101682348767.3829339-CDS-Ecto-sp6_S_contig108:122941..123010Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 122942..123010 -
1682348767.3917286-CDS-Ecto-sp6_S_contig108:124240..1244911682348767.3917286-CDS-Ecto-sp6_S_contig108:124240..124491Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 124241..124491 -
1682348767.4008477-CDS-Ecto-sp6_S_contig108:125266..1256171682348767.4008477-CDS-Ecto-sp6_S_contig108:125266..125617Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 125267..125617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1130.1prot_Ecto-sp6_S_contig108.1130.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 122336..125617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1130.1

>prot_Ecto-sp6_S_contig108.1130.1 ID=prot_Ecto-sp6_S_contig108.1130.1|Name=mRNA_Ecto-sp6_S_contig108.1130.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=278bp
MESAERYLPRPSRPPSLPRATTRRPIKRQRRRIALLAEFAAAPPSFLLQV
VVVASAISSALAQLSSDAELSVGSVQDALTCNVTLYDQWYDSPYSGALLE
DLVDFWIFPDAELTNGQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIY
DVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSG
RMLCETFGQCGAWNCRISDFMCPRYEYNKQTVPHRGKGDCSGAKRAGGRG
SREYATTVIPPLSVAVFVAAAVSRIGL*
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mRNA from alignment at Ecto-sp6_S_contig108:121577..125617-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1130.1 ID=mRNA_Ecto-sp6_S_contig108.1130.1|Name=mRNA_Ecto-sp6_S_contig108.1130.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4041bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:121577..125617- (Ectocarpus species6 EcLAC_371)
ATGGAGTCGGCAGAACGATACCTTCCGAGACCGTCGCGGCCACCCTCTCT
GCCACGAGCAACGACCAGGAGGCCAATAAAAAGGCAACGAAGACGGATCG
CACTACTTGCTGAGTTCGCCGCCGCACCACCGAGTTTCCTCCTGCAGGTA
GTCGTCGTCGCTTCAGCGATATCGTCGGCGCTTGCTCAGCTATCCAGCGA
CGCAGAACTAAGCGTTGGGTCTGTACAGGATGCCTTGACTTGTAACGTGA
CGCTGTACGACCAGTGGTACGACTCTCCTTACTCCGGCGCGCTCCTGGAG
GACCTGGTCGACTTTTGGATATTTCCGGACGCTGAGCTCACGAATGGCCA
GGTATTGACTATTATTGTACAGGTATTGTAGCGCCCCGTGTTTAAGAAAC
GTCAAGCTTGAGGCTCATTTTTATATGTCGTCACCGCTTTTGAGCGTAGG
TCATCCTATTGAGTGTAGTGTAGGATCCACGGCTGGTTGCTGCGGTTGAT
TGGTGTTTTTCTTGGTCGATTTTTCCGTTTATCGCCAAAATCTGAGCCTT
ATTTTCGTGAACGTTATTGTTTCATTATCAATCAATCGCGGATGCCAACT
CTACATATAGAGGCTATCTTAGCACCGAACGCAGTTGTACTGCCCTTCTA
CCTCGATGAACTACTATTGACGGGGTGTGCTGCTCTGCATGTGGGGGATC
CGAGAATTATTAGCACTGCGCAGTCGAAAGAAACAAAATGAGGCGGCTTG
AGCCTTTTTTTTTCTCATTTTGAAAGTGTCCCTACGGCCGTGACATTATT
GAAACGTATGTTCCGTGAACACCTCACAGACAGGTGGACGTCGACCCCCC
TTCCCCAAATTTGAAACGTATGTTCCCTTGAACGAACAACTCACAGAATC
AAGGCCTCGGACGTCGAGGTATTTTTGAGGCCCCTTGTCCCCAAAATGTT
GGATGCCTTCGGGCGAGGGCCAAACCGACATCCACCGACATCCACGTGTG
TTTTCGTGAACACCTACCACATGCTAAACCGAGAGATGCGGAGCAATCAT
CAACCCTAAGTTCAATCATGCCAAGGCTATGAAGTAATCGACAAAGCTGC
GGTCTGTTTGGAAATTTTCAATGCAGGCGTTGGAGGTGGTTTCGTCAACC
TGCCGCGTCATGATGGATACGCTCCGCCTCGACAGAGCGGGGAGAAACGG
ACCCGTGCAGGACAAGTATATCTACGACGTCATGTGCGCGAACGAGTGCA
CGCTAAGCGACTCGATTCGGGAAGAGGCGATGGAACTGTCCAGCTGTACC
TGCTTGGAGTTGTCGACTCAGCCTTCGAATCCGATCTACCACACGGAAGG
AGACTGGTGTGTGGAGAATTCAGGGAGGTAAGACGAATAGCAATGTATCG
GCAGGGCAACGCACGCCTGGGCATGACGTGAAAAGGGGAGAGCATCACCC
TCACCACCCTTCTCCAGAGCGGGAAAAAATACCGTGGTGGATATGTAACG
GTTTGGGAGATGACGCATTGCAAAGCAAGTTGTGTACTACGTACCGTAAG
GATGCGAATAAGGATGCGAAACATGGCACGGTTCGGAAAGATGGCACCGG
GGGGCGAAAAAAAAAGAGATGCATGATTTGGTCGTATGTCCGCCCCGGGG
TAAGGAAGCGGAAGATGGTACGGGTAGGAGAGATGGCACTGGGGTGCGAA
GAAGCAAAAAACAAGAACGGCATAACAGAATATTTTTTCCGCCCCGGGGT
CGGAGTGATGCACCCGGTGCCACCTCTCCGACCCCAAATCCAAGATTGAA
CGCTTGGCAAGTGGGCCCAGGCCACGTTTTGAGCTGCTTCGCTATACTGA
GGAACCTGGGCACAATTTACATGCTGTGCCTGTTGTGTGTGTTTCCTGTA
CCGACCGATACATCATGCTTCTGCTTGCACACTGGTACCGGTATGCCTAC
TACTGTGGTGGTATGGAACACTATCACCGGGATGGTGCGAGAGATGTCAC
CGGGGTGTCTTGAAAAAGCTAGATGAAAGGTTCTTTGAATTTCCGCACCG
GGGTCGGAGAGATGGCGCCGGGGTGCGAATGAAAAAGAAGAAAATACATG
AAAATTCACCCTGTGATATCTCCCACACCCTTACGGAATTCTTCATGGCC
AAGGTCTTGAGTGGGAGCACCACCAGCCAGTCATATGTATGTTGACGAAA
CAACCTGTCACATGCATATGGTGGGAAAATATGATACAGGGTCGGGGGGC
ACACGATGTGTGCGCGTATGCTGCTGATTCTTAGTCAGTGCAAGCCTGCG
TTCGGGCTCCTGATCTTCGTGTTGGAACAGCTTCCTCATTGGTCCTGCAA
TAGCCCGCCCCTCTGTCCTCATTTTGATTGAAATGGTGGGTGTACGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGACCTATCTGGGTGAAAGCAAAACTTGAGCAAAAGCTTGTTCG
CCCAGCCAGTCAAAGAACGTAGTCAACCGGCCCGAAACGACACCCTGGTC
AATTTTCCCGTCCCGCGTCCCTGCTGCATATATATGAATGAACGTGACCA
ACAACAGGATGCTTTGTGAGACGTTTGGCCAGTGCGGGGCATGGAACTGT
CGCATCAGCGACTTCATGTGCCCCAGGTTAGAGAACACATCACACGTTGA
TAAACAAGCCACACATTCGTGCTATTCCATACCCTGAACCACGGCAATAA
ATAGAGGTTTCTCAGGCTCTTTCAAGTAGTCTTCCCCTTGAATTTTGATG
GCCGTAGAAATCACCACTACATCGACTTCAAAATCATCACACAGGATGCA
TGTAGTTCGCGGTTCAATTCTTCTCAAGAAATATCATACAGTTGGTTCCA
CCTGTGGTGTTTGTTCGGAGTGTTTTCTTCTCTTGATACCGTCCAACAAA
CAACTGGGACCTATGCTATCCAACATGCAAGTGTTGGCTACCGCTGCTCA
CTTGGGTGGTAATGGGAGTGGTATGATGCCTTTCTCTGTGCTTTGGTGCG
TTGTTGTCCGTTCTGCAATATGAACAGATTCATTCGTCGCAATCACTCTT
TGTCGTGTATGTGCCTCAGGTACGAATACAACAAGCAGACGGTGCCCCAT
CGTGGGAAAGGGGACTGCAGCGGGGCGAAGAGAGCGGGGGGGAGGGGGTC
CCGGGAGTATGCCACCACCGTCATACCCCCTTTGTCGGTAGCAGTGTTCG
TTGCCGCCGCGGTCTCTAGAATTGGGTTGTAACCCGTGGTGACTGTCACC
TTCGTGTCGATCTCACCACTCTCAAGTACCATGGCACATTTTTGTCCGGG
GATCACAGCGTAGCAAAGATTATGGTTGTTGAGAGTGTGCAGAGTGACGT
AGTATCACCGCAGGGGGGGTGCATTCTGCGGGGACCCCGTGCGTCGGGTT
TCTTCAACCGAGAAACAGAACAAAGGAAAATACTGACGGATAGGTAGAAC
TACCTCCTACGCGACCATACTGAAGGCTTTTGACCGAGAGAAAGATTGAG
AGCGGGAAAAGATCGTAAAGGGGGGGGTTAAGTCCTTCAACCTGTACCGG
AGTGCCCGAAAGGCGCATACGGATAAAGTTTAAGTTAGTGCCACCGCTGG
GGACTGGTGGCCACACGTTGTTCGGAGATAGACAACGGAGGACGTCCTTT
CTGTGGGCCCCCTGATCGAACGTTTGGTATCTCCCAAGCGAAGAACATTG
CGTTGGGTACAATACACGATGGGGTACACGATGGGGACAATGCTGCTGAC
GTTCTGTTAATGCCCCTAAAACCCACAGAAGGGTTGGGGGAAAGAGTGCA
CGGATCTTGATAAAGCATATGATTGCACCAGTCAGTGTTGATACGTGAGT
GAGGATAGTGGAGGACGCAGCACACGAAAAAATTGCCATTGCGAGAACGG
CCGTCGAGAATGTCTTGCTTGGTATACACCTCTCCCCGGCTGCCACAGGA
GGCTCAAATAGCCCGCGTGTTGGAGTAAACGGCACAAATGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:121577..125617-

>mRNA_Ecto-sp6_S_contig108.1130.1 ID=mRNA_Ecto-sp6_S_contig108.1130.1|Name=mRNA_Ecto-sp6_S_contig108.1130.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:121577..125617- (Ectocarpus species6 EcLAC_371)
ATGGAGTCGGCAGAACGATACCTTCCGAGACCGTCGCGGCCACCCTCTCT
GCCACGAGCAACGACCAGGAGGCCAATAAAAAGGCAACGAAGACGGATCG
CACTACTTGCTGAGTTCGCCGCCGCACCACCGAGTTTCCTCCTGCAGGTA
GTCGTCGTCGCTTCAGCGATATCGTCGGCGCTTGCTCAGCTATCCAGCGA
CGCAGAACTAAGCGTTGGGTCTGTACAGGATGCCTTGACTTGTAACGTGA
CGCTGTACGACCAGTGGTACGACTCTCCTTACTCCGGCGCGCTCCTGGAG
GACCTGGTCGACTTTTGGATATTTCCGGACGCTGAGCTCACGAATGGCCA
GGCGTTGGAGGTGGTTTCGTCAACCTGCCGCGTCATGATGGATACGCTCC
GCCTCGACAGAGCGGGGAGAAACGGACCCGTGCAGGACAAGTATATCTAC
GACGTCATGTGCGCGAACGAGTGCACGCTAAGCGACTCGATTCGGGAAGA
GGCGATGGAACTGTCCAGCTGTACCTGCTTGGAGTTGTCGACTCAGCCTT
CGAATCCGATCTACCACACGGAAGGAGACTGGTGTGTGGAGAATTCAGGG
AGGATGCTTTGTGAGACGTTTGGCCAGTGCGGGGCATGGAACTGTCGCAT
CAGCGACTTCATGTGCCCCAGGTACGAATACAACAAGCAGACGGTGCCCC
ATCGTGGGAAAGGGGACTGCAGCGGGGCGAAGAGAGCGGGGGGGAGGGGG
TCCCGGGAGTATGCCACCACCGTCATACCCCCTTTGTCGGTAGCAGTGTT
CGTTGCCGCCGCGGTCTCTAGAATTGGGTTGTAA
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