mRNA_Ecto-sp6_S_contig107.1114.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig107.1114.1
Unique NamemRNA_Ecto-sp6_S_contig107.1114.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig107.1114.1 vs. uniprot
Match: D7FQN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN7_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 1.530e-70
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:   64 QVCHVPCTRVNCSREKRGAWSSGSSRNASDRMAFPTPVLSGTLGFFFGCLFLLGIMKAGQLSGSLSKDNTGIGFTVVITSAFSMWLLWAMAWFHQWHPLITPEFP 378
            +VCHVPCTRVNC+REKRGA SSGS+RNASDRMAFPTPVLSGTLGFFFGCLFLLGIMKAGQLSGSLSKDNTGIGFTVVITSAFSMWLLWAMAWFHQWHPLITPEFP
Sbjct:   16 KVCHVPCTRVNCTREKRGAGSSGSNRNASDRMAFPTPVLSGTLGFFFGCLFLLGIMKAGQLSGSLSKDNTGIGFTVVITSAFSMWLLWAMAWFHQWHPLITPEFP 120
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BLAST of mRNA_Ecto-sp6_S_contig107.1114.1 vs. uniprot
Match: A0A6H5KZQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 9.460e-49
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:  157 MAFPTPVLSGTLGFFFGCLFLLGIMKAGQLSGSLSKDNTGIGFTVVITSAFSMWLLWAMAWFHQWHPLITPEFP 378
            MAFPTPVLSGTLGFFFGCLFLLGIMKAGQLSGSLSK+NTGIGFTVVITSAFSMWLLWAMAWFHQWHPLITPEFP
Sbjct:    1 MAFPTPVLSGTLGFFFGCLFLLGIMKAGQLSGSLSKENTGIGFTVVITSAFSMWLLWAMAWFHQWHPLITPEFP 74
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BLAST of mRNA_Ecto-sp6_S_contig107.1114.1 vs. uniprot
Match: A0A835YSN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.020e-20
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:  166 PTPVLSGTLGFFFGCLFLLGIMKAGQLSGSLSKDNTGIGFTVVITSAFSMWLLWAMAWFHQWHPLITPEFP 378
            P P+L GTL F   CL ++G+ +AG ++G+L+K    IG+ VV+ S+  MWLLW MAW HQWHPL+ P +P
Sbjct:    5 PLPILYGTLVFSAMCLSVMGLCRAGTMTGALTKPEAEIGYVVVVLSSVCMWLLWMMAWLHQWHPLVEPLYP 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig107.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQN7_ECTSI1.530e-7096.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZQ5_9PHAE9.460e-4998.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSN8_9STRA1.020e-2050.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig107contigEcto-sp6_S_contig107:583162..585529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score218.4
Seed ortholog evalue1.9e-54
Seed eggNOG ortholog2880.D7FQN7
Model size381
KEGG koko:K02153
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categorysignal anchor
Exons4
EggNOG free text desc.ATP synthase subunit H
EggNOG OGs2E1EC@1,2S8RN@2759
Ec32 ortholog descriptionATPase, V0 complex, subunit e1/e2
Ec32 orthologEc-16_001020.1
Cds size381
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348765.386805-CDS-Ecto-sp6_S_contig107:583161..5832161682348765.386805-CDS-Ecto-sp6_S_contig107:583161..583216Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig107 583162..583216 -
1682348765.3973358-CDS-Ecto-sp6_S_contig107:583624..5837071682348765.3973358-CDS-Ecto-sp6_S_contig107:583624..583707Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig107 583625..583707 -
1682348765.408608-CDS-Ecto-sp6_S_contig107:584415..5845501682348765.408608-CDS-Ecto-sp6_S_contig107:584415..584550Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig107 584416..584550 -
1682348765.417762-CDS-Ecto-sp6_S_contig107:585421..5855291682348765.417762-CDS-Ecto-sp6_S_contig107:585421..585529Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig107 585422..585529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig107.1114.1prot_Ecto-sp6_S_contig107.1114.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig107 583162..585529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig107.1114.1

>prot_Ecto-sp6_S_contig107.1114.1 ID=prot_Ecto-sp6_S_contig107.1114.1|Name=mRNA_Ecto-sp6_S_contig107.1114.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=127bp
MTLRPVCPHLRGHLRKDRKTQQVCHVPCTRVNCSREKRGAWSSGSSRNAS
DRMAFPTPVLSGTLGFFFGCLFLLGIMKAGQLSGSLSKDNTGIGFTVVIT
SAFSMWLLWAMAWFHQWHPLITPEFP*
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mRNA from alignment at Ecto-sp6_S_contig107:583162..585529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig107.1114.1 ID=mRNA_Ecto-sp6_S_contig107.1114.1|Name=mRNA_Ecto-sp6_S_contig107.1114.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2368bp|location=Sequence derived from alignment at Ecto-sp6_S_contig107:583162..585529- (Ectocarpus species6 EcLAC_371)
ATGACGCTGCGGCCTGTTTGCCCCCATCTGCGGGGCCACCTTCGGAAAGA
CAGGAAGACACAACAGGTGTGCCACGTCCCGTGCACCCGAGTCAACTGCT
CGAGAGAGGTGAGAGCTCGGTAATTCGAAGGGTCCTACCGGTAGGCTGGA
ACCATGAGCATAGATTTGGCACGCGGCCGGCTCCTGTTGATCTGTCTCTG
GGTCTAATCTGGCTCCGAAACTCCAGGAGGTCGCAGCGGCCGAACCTTTT
CCCTCTCGCCCCTGATGGTCTCGAATTCGTGAAATCGTACAATTGCACAA
TTGACTGCTGTTCACCATTAGCGAGACTGCTTGTTGCTCGGGGCCCTCCC
GGCCATGACGTGGAGCCATAACGTCCAACCCAGTCTCTCGGTGCTTAGTA
CGCCGTGCTCAGTTGAATGGCGGCTGGCCGCCAACGAGCTGGTATTTAGC
AATGACTGACAGGGAAAAGTTAAAGTTTGTTTTGCGGCGGCTCTTCTTCA
CCTCCTGTACAACAACGAAGCTGGTCTTGAGCAGTGCTGTCACTACCCTG
AGATCGACGAGCGGAGCCCGCTCAATCCTGAACCCCACGCGTCAGCTTGT
GTGTGCTAGTGGTACAAATTAAGCAGTACTGCTGTTGTTAAGGAAATCAT
AGCACTCTCATCCGAGGTGCGGCCCGATTGTCGCCGCCTCTGCTCACACG
ACATGCGGCTGCACGCTTAGACTTCACAACTAGCCAAGGCCTTGCCTATA
TGCTGTTGGACGCAATGTCGAAGAGCCTCCTTCTTCCCCTTACGACTTAG
CTGGATCTGTATAATCTGCACATGCATATTGCGGTCCACCCTCTCTATGG
AAACAAATTGGACTATACTCTCTGCCCTCCACGCCAGAGGACGTCTGGCG
AACGCGCTCTGAGAGCATTAACGTACCAGTTTTTAAACCGCACTTCCGCC
AACACATCTCGCTCCCGCCGACTTGTCAGAAGCGAGGTGCTTGGAGCAGC
GGCAGCAGCAGAAACGCCAGCGATAGGATGGCCTTCCCGACACCAGTACT
AAGCGGCACCTTGGGGTTCTTCTTCGGGTGCCTCTTCTTGCTAGGGATTA
TGAAGGCTGGCCAGGTGGGAGGGTGTAACGGTCTTGGTACAACAGCAGTA
GCAGCACACCTGGTTAACTTTTGGTATGGTATATCTGCTGGTACTTTTGT
TGTAGGGCCGGGTGTCCTTGTTGCTAGTTAGCAATTCATACGTCTGCGTT
GGCTTGTGGTGAACCTCTCTGATTCGCCTGGCGTTATCGTGTATGCATCT
CATTTGACAAACTTCCCCGAGGTGGTGCCACGAAGTCGTCAAGGGTCAAG
GTGGCGATAGCCGGTGCTGTTGCGGATTTCAGGGGAGCGCACACACCCCG
AACAGTATCTCTGCTACTGCAGCGGGACAACTGCGTTACTTTGCCTGTTG
CTACAAGTATACCGAAGTGCTACCCACTTGTCCTACCACAACGTCAGTTG
GCAGTTTGACCTCTTACGCATAGTAATCTTTAGCTGTATTTTTTTTTCAC
GACAAAACAATGGCTGGACCGGCGCTTGGTCGCAGCACCAAAAGCATTGA
AAGAAACAAACTCCTGAAGCGGCATGGTCGTTTCAGAGGAAGGCGCGGAA
AAAACGTGTTTGTGTCCTCCGTCTTTTAGATTATCCTGCTGCGTTTTTTT
TTCTCCATTTCCACGTATGCTAGACGTTTTCCTCACTTCCCCTGTCCTCC
CCTTCCCGAATGACATTGACACGCCCGTGCGACCACTTCGATGCGGGAAT
TTTCCGCGAACGGCAACACCAGCTCTCTGGCAGTTTGTCCAAGGATAACA
CAGGGATTGGCTTCACGGTGGTCATCACGTCCGCCTTCTCCATGTGGTTG
CTTTGGTGAGATGTGTGACCAATCGTGGCCATGGGGCAGACAGCCAGTAG
ACGGTACAACTGACGCGGAGTTGGGGTATGGGGCCGCTGCCCAAAACCGT
TGTACATGTGCAGAAAAGGGAGAAAAGGCCCATGCGTGACACTTGAGCTG
CGTACAAGGCCCGAACCCATTATTTCCGCCTGTTGCTCAGTTGCTTGTCA
CGCAAACTGATGCATACTCGAAAACATTTGTGTGTTTTTGCCTTCGTGCA
GTGACTGCCCAACCACCAGCGCCAATACTTGTGTTTGGCAAGGCTCGCCC
GACGTTCCTCTCTCTCTCTCTCTGTCACCTAGTCGCTTGCTGTCTTTGGT
CGCCCTTTGGTCCTTACACGTGCCGTTGCCTGCGGTCCTGCTTTTGGTTG
TCTACATGTACAGGGCCATGGCATGGTTCCACCAATGGCATCCCTTGATC
ACACCAGAGTTCCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig107:583162..585529-

>mRNA_Ecto-sp6_S_contig107.1114.1 ID=mRNA_Ecto-sp6_S_contig107.1114.1|Name=mRNA_Ecto-sp6_S_contig107.1114.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp6_S_contig107:583162..585529- (Ectocarpus species6 EcLAC_371)
ATGACGCTGCGGCCTGTTTGCCCCCATCTGCGGGGCCACCTTCGGAAAGA
CAGGAAGACACAACAGGTGTGCCACGTCCCGTGCACCCGAGTCAACTGCT
CGAGAGAGAAGCGAGGTGCTTGGAGCAGCGGCAGCAGCAGAAACGCCAGC
GATAGGATGGCCTTCCCGACACCAGTACTAAGCGGCACCTTGGGGTTCTT
CTTCGGGTGCCTCTTCTTGCTAGGGATTATGAAGGCTGGCCAGCTCTCTG
GCAGTTTGTCCAAGGATAACACAGGGATTGGCTTCACGGTGGTCATCACG
TCCGCCTTCTCCATGTGGTTGCTTTGGGCCATGGCATGGTTCCACCAATG
GCATCCCTTGATCACACCAGAGTTCCCGTGA
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