mRNA_Ecto-sp6_S_contig106.1042.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1042.1
Unique NamemRNA_Ecto-sp6_S_contig106.1042.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig106.1042.1 vs. uniprot
Match: D7G4B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B9_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 9.400e-28
Identity = 90/142 (63.38%), Postives = 95/142 (66.90%), Query Frame = 1 
Query:  286 MAAMRGGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKTHEDSRKKLELAHSKEIEDMTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPANRRRVTAIGVRPISPV 711
            MAAMRGGRGGIED+L+GA  +IS L KENK VKR+LASAVSENAR  KTHEDSRKKLELAH+KEIEDMTKA                                     XXXXXXXXXXXXXXXX  NRRRVTAIGVR ISPV
Sbjct:    1 MAAMRGGRGGIEDDLIGAVKEISKLSKENKTVKRDLASAVSENARLVKTHEDSRKKLELAHAKEIEDMTKAIEDAKKNEREAIETAEKTFAELKNCTIEKEKIKTELGXXXXXXXXXXXXXXXXXXNRRRVTAIGVRQISPV 142
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BLAST of mRNA_Ecto-sp6_S_contig106.1042.1 vs. uniprot
Match: A0A6H5KZ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ20_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.410e-22
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:  286 MAAMRGGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKT----HEDSRKKLELAHSKEIEDMTK 495
            MAAMRGGRGGIEDELVGA MQ+STLGKENK VKRELASA+SENAR  K     HE+ R+KLELAH+KEIED+ K
Sbjct:    1 MAAMRGGRGGIEDELVGAVMQMSTLGKENKTVKRELASALSENARLTKASAWAHEECREKLELAHAKEIEDLKK 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B9_ECTSI9.400e-2863.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ20_9PHAE2.410e-2277.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:184337..188635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size711
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002110.1
Cds size711
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.8465493-CDS-Ecto-sp6_S_contig106:184336..1847551682348755.8465493-CDS-Ecto-sp6_S_contig106:184336..184755Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 184337..184755 +
1682348755.8614628-CDS-Ecto-sp6_S_contig106:186730..1868601682348755.8614628-CDS-Ecto-sp6_S_contig106:186730..186860Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 186731..186860 +
1682348755.877588-CDS-Ecto-sp6_S_contig106:188473..1886351682348755.877588-CDS-Ecto-sp6_S_contig106:188473..188635Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 188474..188635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1042.1prot_Ecto-sp6_S_contig106.1042.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 184337..188635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1042.1

>prot_Ecto-sp6_S_contig106.1042.1 ID=prot_Ecto-sp6_S_contig106.1042.1|Name=mRNA_Ecto-sp6_S_contig106.1042.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=237bp
VLGLVLLYTAHSRPLSSRVSSLPTLSPFHTPEEVRKLVSYGDNLRRRVCI
SRGQTEQEANFTALTAAKELLREGTAHTFVPSKKETKGSECGWSIMAAMR
GGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKTHEDSRK
KLELAHSKEIEDMTKAIEDAKKNEQEAIETAEKTFAELKNCTIEKEKIKT
ELGEARAALAEAAAVTARAPANRRRVTAIGVRPISPV
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mRNA from alignment at Ecto-sp6_S_contig106:184337..188635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1042.1 ID=mRNA_Ecto-sp6_S_contig106.1042.1|Name=mRNA_Ecto-sp6_S_contig106.1042.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4299bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:184337..188635+ (Ectocarpus species6 EcLAC_371)
GTCTTGGGGCTTGTACTCTTGTACACAGCACACAGCAGACCGTTGTCGTC
GCGCGTGTCGTCTCTCCCTACGCTCTCACCATTTCACACACCCGAAGAAG
TAAGGAAGTTGGTTAGTTACGGTGATAACCTAAGGAGGAGAGTTTGCATT
TCAAGAGGTCAGACAGAGCAAGAAGCCAACTTCACTGCTCTCACTGCTGC
CAAAGAACTGCTTCGGGAAGGTACAGCACACACGTTTGTGCCATCAAAGA
AAGAGACGAAGGGGTCAGAGTGCGGCTGGAGTATCATGGCAGCTATGAGA
GGCGGGAGAGGTGGGATTGAGGATGAGCTCGTCGGCGCCGCGATGCAGAT
TTCGACCCTGGGCAAGGAGAATAAGAGGGTCAAGCGCGAACTCGCTTCGG
CTGTGAGCGAGAACGCCAGGTGAGAGGAGAATCATTTGACACGGACCTGC
GCTAGAGAGAGAGGCTATGTCCTACAGCAGTACAGCAGTTCGCCTACGAC
TCTGCTAGCGTACTAGTGTGAAGCCATACCCGACAACAATGCCGCCGCTT
GAAAATGTTGGGGTTCGCCGCTCAATGGATCCAACAACGATGTCTGTTGC
ATCTCTCACGCCGCGTGGCGCCACGTTGTCCACCGCTACATATGTACCCC
AGCCGCAGTTCCATTATCTAAGTAACATGTTACTCAGGGAGATAAAGCTG
TAGACTATGCCGCTCGGGGAACCGTAGAAGCACAGGTTGGTCGTTGTCGT
CATGCTATGAATTCGTCGTCAACTTATCCCTGACTTTACTACCGTGGATA
GAGGTGAATCTGTTGTGTTTTTAAAACATGAAACCAGAGGAGACTTGGAG
AGCGACCCCATCCAACACTGGTCCCTCAGGGCCTTTCCTTCCCCAGCTCC
ATCACGGGCAACATGCTACGTATTTTATCGTCACCCGGGCGTCCGCTTCG
CGTCGCGGTGTGTTGTTCTGCTGCGCCCGTCGCAGTCGGGGCGATTAGCT
CCAGTGTGTCTACATGCGCTTTGTGTAGGTGCGCCTGCCAACAAGCGACA
CGCGAAAGTCACCGCACATACCCTGGACCGGCCTTCGCAGCCGGATTGAT
TGCCCCGCAACGGCAGTACCCAGACACCCCGTACAGGAAGACAGGAGCCA
GTTCTGAAACATTGGCTTTGATTGTCCCGAAAAAATATGAAAAAATAGCT
ACATGTAGCATACATGTAGACACACCGCTGGCCGGTGGATCCTGCTCTGA
CACCTGTGTAGCAACCTGCTCTCGACGTGGGCGACGAACCTTTTAGATGA
AGAGCCTCGACTCGAATTGACGTATAATATCCTGCTGTCTCTGTGCGCTG
ACTGTTGTATGATAATTACAACAACTCAACGATGATAAAACGCCTACGCT
GACCAGTTTGGATGCGCCAAGCACCGGCGGCGGGAAGTGCTATTGTTTGC
GTCTCCACCGTTTTCATTTCCTGATTTGGCGGGAAGTTGCACATGATAAT
TTACTTGCGGCCTTACATTTAGTCCTCACGTATTGAGATCATCAACAGCC
AAATGTCTCTTGCGAAACATAGGTACAACAGTCTACATATGACCAAATCT
TCGACAAACCACTTGAATTGGCTGTGTGTTTTCCAGCCCACCTTTCCCGT
CCCGCCCTCACCTGCACTTCGGTTTACGCGCACCGGTTTTGTAATCCCGG
TGAAATACCTGTTTTCGCAACTTTTGAGAATTTTGCGAGAGTCCACAGTT
AACCGTTTGTGTGTCAGAGCTAGCGACCGCCGCGTTTCCGTGGCTTGCAG
ATTTTAATCGCGGTCTCACCACCTCGTTCGTCCTTTTGCCCAACGTTGTG
CCCCAATACCAACCCTTCGGTCGGCGCACGATTCGCCTCCACCAGGCTCG
TGAAGGTGAGTGCTTGGGTACTGGTTTTCGTCAGCGTTCTGGCGCTCGCG
CTTGACGTTGTTCGTACCGTCTGAACCTCTCACATCGACTCTCGTTGGTA
GTTTTCGACGTTGCTTAAGGCTCGAAAGACAGAAGGATTGCGTGAGGTAT
GGGCAGGTGGGCAGCTGTCGGTTGTTTCGAGGTGGTGGATGTACCCGTTA
CATGTCGACAGCGGCCGTTCCGCGTCGCCACAAGTCTTCACCATGGTAGC
GCCGGGCGTGCAGAGCATTCTCGTCCTTTAACCAAGGCTCACCGTTGAAC
GGTGAAAAAAAGTCTTTCCAAACTTGCTGCCTCTTGTTTCGTCGTTATAT
CACATGTGGGACTGCTGTCGGGCGTTGTTGATACCCGAAGACACGCGTTG
CGTGCCGTTTACTCTCGATGCATTAGTGGCATTGTGGACTGCTTTCGTCT
TGTTCACCTCCCGCCGCGTCTTGCACTCTTCCTTCTGTCGTTTCGCGCCC
AAAGACCCACGAAGACAGCCGCAAAAAACTGGAGTTGGCCCACTCGAAAG
AGATAGAAGACATGACGAAAGCGATAGAAGACGCGAAGAAGAACGAACAG
GAGGCGATCGAAACGGCTGAAAAGGTGGGGGCACCGTGCTCCAATATATT
GGGAGGCGGGTGTGTGGGATGCGCATTTGGTGTGGTTCGTTTTTCTTCGT
TTTGGTTTACCTTCCGCAGCGTCTTGCACCCTGTCGTCCATCGTGTCGCG
TCCAAAGATTCACGAGGACAGTCGGAAAAAGCTGGAGTTGGCCCACGCGA
AAGAGATAGAAGACATGAAGAAAGATGTAAAAGACATGAAGAAAAAGATA
GAAGACGTGAAGAAAGAGATAGAAGACGTGAAGAAGAGCGAACGAGAGGC
GATCGAAACGGCCGAAAAGGTGGGGGCACGGGAATTCAATATTGGGAGAC
AGACGGGTGTGCGGGATGGTCGTTACTGTATGGCGGGGGGGGGTGCACGT
CAGGGTGTCCCAAGAGGTGAAAGGCGGAGTTCAAGCGAAATACCCTTGCG
CTATATACATCGGGGGGACGTGTCCTAAAATGGGGTGGAGGAGCGTATTG
CACGCCCAAAAGACCAAAAAGTCAAGTAGCTACTTTTGAACTTTGACGAA
GCGTCCCTGATACTTTCCGTTGCTTGTAATTGACCTAGCGAAATAACCCT
GCACGCAAGATTTTCGACATAACAACCAGCTTCGGAGGAACCCACAGGTT
TGAAGCATGCACTCTCAACCAACCCTCAAGGTGCCAGGGACGAAATATGC
CTTTTTTAGTTGTTTGGTGCCGTTTTTTTTTGTTGGTCTTGGGGATCTTT
CGTCCCAAGACAAGCACATGGGTCATGCTCTTTTGGTTGAGCTTTATGCT
ACAAAGCCCGATCTGACTGGTTGGACAGCGAGTGATGCACGCGGTAGACC
ATGTGGGCATGCCGGGGGCGTAGTGAGGCCGATAAAATGTTCGATTTTCC
AATGACCGAGCATTTTTGAACGCGTTGGGTCGTTTTGGTGCGGGTATCGA
CCACCCCGCTGACGCGCTGCAGCCGTCTTGCTCTGTACGGTAGTGGAGTT
GTGTTCTCTGCAAGGGTTAACGTGAAGCAGGTTTCTTCCCGGTTTGGTGT
GATTTGGTGTGTTTGCTGGCTGAAATAGTGTATTTTGCTGTCCTTGTTGG
TTCACGCCACAACCTTTTGCGACCCCGCCGGGGGTTGTGTCTTTTGTCCG
ATTCCTGCGCCTGTGTATCTAAGTGCGCCTCACTGCTGTTTTCCCTGATT
GTTTGGCAGCCCCGTGGGGTGTCCGCAGAGTATTTATCGCACCGCATTTC
GATCCATGCCAAGTCAGGAGACACGCGAAACGCGGCATGGTGTTCCACAC
GAAGCATGTACAAATCATTATCAAGACTAGAGAGATAGCTGTATTCAAGA
AGTGATAACGTGCACTCCAAAGAGAGACGAGGACGACCTTCGCCTCCGTG
TGTGTGTGTGTGTGTGTGTGTGTTTGGCAAGGCCGTTCTCCTCTACGTCT
GACAACGTGCCAGGGTGTTCATGTCCAACGACGACGTTGATGCACCACCC
CGGAGACGTCTTTCCATGGTAATTCGATGTGCTCTCCTGATATGATATGC
TATAACAATATGTGCTCTTGTGTGGTTGGGTGATAATGGCGCCCCCCCTT
TGCTCGTGGTGGTCTGTTCGCCGCCATCACCTACAAGACTTTCGCGGAGC
TGAAGAATTGCACAATAGAGAAGGAGAAGATTAAGACAGAGCTGGGCGAG
GCAAGGGCGGCGCTGGCGGAGGCAGCGGCAGTGACTGCACGGGCCCCCGC
CAACAGGCGTAGGGTCACCGCCATCGGAGTTCGTCCGATTTCTCCCGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:184337..188635+

>mRNA_Ecto-sp6_S_contig106.1042.1 ID=mRNA_Ecto-sp6_S_contig106.1042.1|Name=mRNA_Ecto-sp6_S_contig106.1042.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:184337..188635+ (Ectocarpus species6 EcLAC_371)
GTCTTGGGGCTTGTACTCTTGTACACAGCACACAGCAGACCGTTGTCGTC
GCGCGTGTCGTCTCTCCCTACGCTCTCACCATTTCACACACCCGAAGAAG
TAAGGAAGTTGGTTAGTTACGGTGATAACCTAAGGAGGAGAGTTTGCATT
TCAAGAGGTCAGACAGAGCAAGAAGCCAACTTCACTGCTCTCACTGCTGC
CAAAGAACTGCTTCGGGAAGGTACAGCACACACGTTTGTGCCATCAAAGA
AAGAGACGAAGGGGTCAGAGTGCGGCTGGAGTATCATGGCAGCTATGAGA
GGCGGGAGAGGTGGGATTGAGGATGAGCTCGTCGGCGCCGCGATGCAGAT
TTCGACCCTGGGCAAGGAGAATAAGAGGGTCAAGCGCGAACTCGCTTCGG
CTGTGAGCGAGAACGCCAGGCGCCCAAAGACCCACGAAGACAGCCGCAAA
AAACTGGAGTTGGCCCACTCGAAAGAGATAGAAGACATGACGAAAGCGAT
AGAAGACGCGAAGAAGAACGAACAGGAGGCGATCGAAACGGCTGAAAAGA
CTTTCGCGGAGCTGAAGAATTGCACAATAGAGAAGGAGAAGATTAAGACA
GAGCTGGGCGAGGCAAGGGCGGCGCTGGCGGAGGCAGCGGCAGTGACTGC
ACGGGCCCCCGCCAACAGGCGTAGGGTCACCGCCATCGGAGTTCGTCCGA
TTTCTCCCGTC
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