mRNA_Ecto-sp6_S_contig106.1038.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1038.1
Unique NamemRNA_Ecto-sp6_S_contig106.1038.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig106.1038.1 vs. uniprot
Match: D7G4B5_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.340e-34
Identity = 77/143 (53.85%), Postives = 84/143 (58.74%), Query Frame = 2 
Query:   47 GKVKEEMWTDVIRGAETREGEPAMGGSPLGESFPLDGCTRKPTHGVKGKKAEFCVSM*PRSAPLTVGSRVRSSAWRAAR-------RESFVRNMRQAA**T*PSRVALPKVASWKQH-----MVRQAARRNPARCIQRRGWST 439
            G VKEEMWTD IRGAETR+GE A+GGSPLGES PLDGCTRKPTHGVKGKKA FCVS     +            +  A+       +E F            PS V    V S         MV+QAARRNPARCIQRRGWST
Sbjct:   16 GNVKEEMWTDGIRGAETRKGEQALGGSPLGESCPLDGCTRKPTHGVKGKKAVFCVSHIIAGSVNVTKECTADGCFTGAKFGVAGSKKEKFCSKHA-------PSGVVNLAVTSCATEGCFMDMVQQAARRNPARCIQRRGWST 151
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BLAST of mRNA_Ecto-sp6_S_contig106.1038.1 vs. uniprot
Match: D7G4X8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 3.150e-11
Identity = 39/57 (68.42%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:   47 GKVKEEMWTDVIRGAET-REGEPAMGGSPLG-ESFPLDGCTRKPTHGVKGKKAEFCV 211
            G VKEEMW+D IR AE  REGE AM  S +G  S  L GCTRKPTHGV GKKAEFC 
Sbjct:   16 GVVKEEMWSDDIREAEDEREGELAMSDSHVGGSSCTLYGCTRKPTHGVAGKKAEFCA 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B5_ECTSI2.340e-3453.85EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G4X8_ECTSI3.150e-1168.42EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:163534..163972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score70.9
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog2880.D7G4X8
Model size439
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-02_002070.1
Cds size177
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.5280514-UTR-Ecto-sp6_S_contig106:163533..1637521682348755.5280514-UTR-Ecto-sp6_S_contig106:163533..163752Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig106 163534..163752 -
1682348755.5476468-UTR-Ecto-sp6_S_contig106:163929..1639721682348755.5476468-UTR-Ecto-sp6_S_contig106:163929..163972Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig106 163930..163972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.5386786-CDS-Ecto-sp6_S_contig106:163752..1639291682348755.5386786-CDS-Ecto-sp6_S_contig106:163752..163929Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 163753..163929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1038.1prot_Ecto-sp6_S_contig106.1038.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 163753..163929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1038.1

>prot_Ecto-sp6_S_contig106.1038.1 ID=prot_Ecto-sp6_S_contig106.1038.1|Name=mRNA_Ecto-sp6_S_contig106.1038.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=59bp
MGKVKEEMWTDVIRGAETREGEPAMGGSPLGESFPLDGCTRKPTHGVKGK
KAEFCVSM*
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mRNA from alignment at Ecto-sp6_S_contig106:163534..163972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1038.1 ID=mRNA_Ecto-sp6_S_contig106.1038.1|Name=mRNA_Ecto-sp6_S_contig106.1038.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=439bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:163534..163972- (Ectocarpus species6 EcLAC_371)
ATGCATCGACTCTACCGAGGAGTGGAGGAATCCAGCGAGGTTGATGGGAA
AAGTCAAGGAAGAGATGTGGACGGATGTTATTCGAGGTGCTGAAACAAGG
GAGGGAGAGCCAGCAATGGGCGGTTCACCTCTAGGTGAGAGCTTCCCCCT
GGACGGATGCACGCGTAAACCTACCCACGGTGTTAAGGGCAAGAAGGCAG
AGTTCTGTGTGTCAATGTAACCAAGGAGTGCACCGCTGACGGTTGGTTCA
CGGGTGCGAAGTTCGGCGTGGCGGGCAGCAAGAAGGGAAAGTTTTGTTCG
AAACATGCGCCAAGCGGCGTGATGAACTTAGCCGTCACGAGTTGCGCTAC
CGAAGGTTGCTTCATGGAAGCAACACATGGTGCGGCAGGCAGCAAGAAGG
AATCCTGCGCGATGTATCCAAAGGAGGGGATGGTCAACA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:163534..163972-

>mRNA_Ecto-sp6_S_contig106.1038.1 ID=mRNA_Ecto-sp6_S_contig106.1038.1|Name=mRNA_Ecto-sp6_S_contig106.1038.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:163534..163972- (Ectocarpus species6 EcLAC_371)
ATGGGAAAAGTCAAGGAAGAGATGTGGACGGATGTTATTCGAGGTGCTGA
AACAAGGGAGGGAGAGCCAGCAATGGGCGGTTCACCTCTAGGTGAGAGCT
TCCCCCTGGACGGATGCACGCGTAAACCTACCCACGGTGTTAAGGGCAAG
AAGGCAGAGTTCTGTGTGTCAATGTAA
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