mRNA_Ecto-sp6_S_contig106.1030.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1030.1
Unique NamemRNA_Ecto-sp6_S_contig106.1030.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig106.1030.1 vs. uniprot
Match: D7G4A8_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A8_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 4.530e-143
Identity = 311/318 (97.80%), Postives = 312/318 (98.11%), Query Frame = 1 
Query:    1 MAQDHEMLQLLLRSGAMWASSLNIPWFLAGAGVGVPAAVGTVTTGNSKLLSLATTLGGVLGGVAADRLSTTISESLAGNDVGGXXXXGCEFTCYDLLTKGVGPACLLLVVLSRSIRSEPSVAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXXTA--TRSGLARLLLLRDVPHRVLGQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLRLSRGPPGKTVGGYMSALRSLAAKKRGTGGWVRIDQWGTGXXXXXXXXXXXXXXXX-ARANGLLGSLYETLMG 945
            MAQDHEMLQLLLRSGAMWASSLNIPWFLAGAGVGVPAAVGTVTTGNSKLLSLATTLGGVLGGVAADRLSTTISESLAGNDVG XXXXGCEFTCYD+LTKGVGPACLLLVVLSRSIRSEPSVAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXX    TRSGLARLLLLRDVPHRVLGQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLRLSRGPPGKTVGGYMSALRSLAAKKRGTGGWVRIDQWGTGXXXXXXXXXXXXXXXX ARANGLLGSLYETLMG
Sbjct:    1 MAQDHEMLQLLLRSGAMWASSLNIPWFLAGAGVGVPAAVGTVTTGNSKLLSLATTLGGVLGGVAADRLSTTISESLAGNDVGXXXXXGCEFTCYDVLTKGVGPACLLLVVLSRSIRSEPSVAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXXXXXXTRSGLARLLLLRDVPHRVLGQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLRLSRGPPGKTVGGYMSALRSLAAKKRGTGGWVRIDQWGTGXXXXXXXXXXXXXXXXXARANGLLGSLYETLMG 318
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4A8_ECTSI4.530e-14397.80C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:88792..92777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1699
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-02_001980.1
Cds size996
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1030.1prot_Ecto-sp6_S_contig106.1030.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 88792..91667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.1146307-CDS-Ecto-sp6_S_contig106:88791..889471682348755.1146307-CDS-Ecto-sp6_S_contig106:88791..88947Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 88792..88947 +
1682348755.122539-CDS-Ecto-sp6_S_contig106:90055..901201682348755.122539-CDS-Ecto-sp6_S_contig106:90055..90120Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 90056..90120 +
1682348755.1323903-CDS-Ecto-sp6_S_contig106:90419..911891682348755.1323903-CDS-Ecto-sp6_S_contig106:90419..91189Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 90420..91189 +
1682348755.14098-CDS-Ecto-sp6_S_contig106:91662..916671682348755.14098-CDS-Ecto-sp6_S_contig106:91662..91667Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 91663..91667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.1481724-UTR-Ecto-sp6_S_contig106:91667..920421682348755.1481724-UTR-Ecto-sp6_S_contig106:91667..92042Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig106 91668..92042 +
1682348755.155252-UTR-Ecto-sp6_S_contig106:92449..927771682348755.155252-UTR-Ecto-sp6_S_contig106:92449..92777Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig106 92450..92777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1030.1

>prot_Ecto-sp6_S_contig106.1030.1 ID=prot_Ecto-sp6_S_contig106.1030.1|Name=mRNA_Ecto-sp6_S_contig106.1030.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=332bp
MAQDHEMLQLLLRSGAMWASSLNIPWFLAGAGVGVPAAVGTVTTGNSKLL
SLATTLGGVLGGVAADRLSTTISESLAGNDVGGGGGGGCEFTCYDLLTKG
VGPACLLLVVLSRSIRSEPSVAVKPAAAVALAALLLEPLFSAYVLGGGGA
SNSTVAPAAAAATATRSGLARLLLLRDVPHRVLGQVGGGGGRRRSAAAAA
TAASASAAASAAAALVARARWLTAGAQLVLWAAVVLAYANVSLRLSRGPP
GKTVGGYMSALRSLAAKKRGTGGWVRIDQWGTGGGGGGGGCDGSAGGGGA
RANGLLGSLYETLMGGGGWGRRPHLPRGYGA*
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mRNA from alignment at Ecto-sp6_S_contig106:88792..92777+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1030.1 ID=mRNA_Ecto-sp6_S_contig106.1030.1|Name=mRNA_Ecto-sp6_S_contig106.1030.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3986bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:88792..92777+ (Ectocarpus species6 EcLAC_371)
ATGGCCCAGGACCACGAAATGCTCCAACTGCTGTTGAGATCCGGAGCGAT
GTGGGCATCCAGCCTCAACATTCCTTGGTTCCTTGCCGGAGCCGGCGTAG
GCGTACCGGCTGCCGTGGGGACTGTGACCACCGGAAACAGCAAGCTTTTG
AGTCTGGTGAGTGCGTGCTGCGTGTCTTGCTTGTAAGGTGTGTGTGTATT
AATGTACTTGATGGGTGGTACGAACGCCCACGGCGGTTGCACGAATAATT
AACACATAAACACTCGTCACAAGCCTTTCGATATCCCGCTATCCCCGCTG
TATTTAGATCCCGCACAGCTGTATCAGCACGCCATGGGTACAGAGGAAAG
CCTGACAGTTCCAATCGCGTCGCTCAGTGATGCGGCCGTTTGTGGCGTGG
CTCTCTGAACCAGTTAAGCAACTATTACGAAGTACCTTTTTGGTGTCTCG
GGTGAATAGACTACTTGTAAATGCTGTAAGCTAGGATATGCGACCACGGA
AGGCGCCCGCGTCAGTTATGGTCCAGAACGGATGTTGGAAGGCACTGAGC
AGAGACCGGAATGCTACAATATTGCGAAGACACAGTAACAACAACGAGCG
TCGCCGATGTGTGATTCGGCAACCTGTGTCAGCGATCTTCACCTCCCAAC
AAGGGCAACGCTGCCTTGGTTTGGTACAATCACCGCCTGCCATCTACCGT
TGCCAAACGGTAAAACGATATGTCGCGCGAGGAGGGATCTCGGGGACGAG
TTCTCGGGTGTTGGGTGTGGGCGCGTTTCCCCCCCCAAAAGCATGAAATA
TTTGCAGGTGTTACTGTTTTCTCCAAGTATAAGTGAAGGCTGTGCACAAT
ATTATTGCTCCAAACAGCAGCATGGCGAACCCGTAGCACACAGCCTTATA
CAGCAGTAGTTCGAACTGAGGGGCGACCGCTGTCTGTGTTTGTTCGTCCC
AAAACAACAAAATAACCAGGCGGATAGGGAACCTTCTCTGTCACATCGTT
GCCGTCGACTGGGCGCTTTCATTTTCCACTCTATGGAAATATATTTCAAG
GTGCTGCCTGGTCTTTTTCTCTTGCCCATGATCCGCGTTTCGTTTGCCAA
ACAAACACCGCCCCTTACGCCCCTACATACCCTTGTGCCCCCCCCGTCAT
AATTTCTTTTGCTCTCTCCTCCTACTCACCTATGGTTGCTGGTGGTCGCC
TGCCAACCCGGCTGACCAACACCAACCGCAATGCATCTTCTTATCTTGCG
CTATTGTTACTCAGGCCACAACCTTGGGAGGCGTGTTGGGCGGCGTCGCG
GCCGACCGACTTTCGACCACGATTTCGGAGTAAGTGGGTCACACACGGCG
TGAATTGTAGTGATGGTCGCTGTTCCTGTTGTACTGTAGAATTGGTGCAC
ACCACCATGTCGAAGCGGGGCTCACGTTCTGACGTGCAGCACCCAACAGG
ATCTTCTCTCAACACCTGCTTATGTTTTGGTCGTTACGTATTTGTCCTTG
CGAACATCGTAACTTGCACTCTGGAGCCCTCAATAAGACCAACTTCGGCC
TTCGGTTTCTTCCGGACTCGATTATTGATAGCACCCAATTCGTGTTGATC
TCTAACTTCGCTCATCCCTTTCCCACAGGAGCTTAGCGGGCAACGATGTC
GGCGGCGGCGGCGGCGGTGGCTGCGAGTTCACCTGCTACGACCTCCTCAC
GAAGGGCGTGGGCCCGGCCTGCCTCCTGCTCGTCGTGCTCAGCAGGAGCA
TCCGCTCGGAGCCCTCAGTGGCCGTCAAGCCTGCCGCCGCCGTCGCCCTC
GCTGCCCTCCTCCTGGAGCCCCTCTTCAGCGCCTACGTCCTCGGGGGCGG
CGGCGCCAGCAACAGCACCGTCGCCCCTGCTGCCGCTGCCGCTACCGCTA
CCCGGTCCGGCTTGGCCCGCTTGCTCCTGCTCCGCGACGTTCCGCACCGC
GTCTTGGGTCAGGTCGGCGGCGGCGGGGGGCGGAGGAGGAGCGCCGCGGC
AGCGGCGACGGCGGCTTCGGCTTCGGCGGCAGCTTCGGCGGCGGCGGCGC
TGGTGGCCCGGGCGCGCTGGCTGACAGCGGGCGCGCAGCTGGTGCTCTGG
GCGGCCGTGGTCCTGGCCTACGCCAACGTGTCCCTGCGGCTCTCCCGGGG
TCCCCCCGGGAAGACGGTGGGCGGTTACATGTCCGCCCTACGCTCCCTCG
CGGCCAAGAAGCGCGGCACCGGCGGCTGGGTGAGGATAGACCAGTGGGGC
ACCGGCGGGGGCGGGGGGGGCGGCGGTTGTGACGGAAGCGCCGGCGGCGG
GGGGGCGCGGGCGAATGGCTTGCTCGGGTCTTTGTACGAGACGCTGATGG
GTGGGGGAGGGTGGGGGAGGCGGCCGCATCTGCCCCGAGGCTATGGCGGT
GAGTCGGTGGCCATGAGCGTCACACTTGTCTTGTGGAATTATAATTGTCC
TTTTATGCCTGCAGCCTCCCTGTCTACCCGAGCGTGTGCTGAACAATAAT
AGCACTGATCCAGCGGTGCTGTCCCATGTAGGTACGTAGGGTCACTGATA
CATATAGGGGATGTTGTTCAGGTGCAGTGGTACCCAAAATTGCTGCAGGG
ACTATGGCCCCGCCTATGTGTCTTGCGTGGTGTCGCGTGCGGTTCCGGAA
GAGTTTTAACGGCTGCTCCTGGGCTCTTGGTATGCTTGGATACCATCCCG
ACACACGTCAAAGACAACCAGAACAATCGATGTCCCAATTGTTTCCAATG
CGAAAAGAGATTTTAAAAGTTTTGATGCACTTTTTCAAACCACATGGTGC
TCTCCTGCCCACGTCTTCTCGGCACGCCCTTGTCCGCTTGTTTGCCTGCC
AACTGTCGAAAACAACGACAGCTTAGTCAGCACCAGAAGAGTTACGATGG
CCCCCCGTTCGAACGGGGTGAGGTGACTGTCCGCAGCATCTACTGCTCCG
GACTCGACGCCGCCATCACAGGCCGCCCTCCCTCCAACGGCAACAGCGTC
GGCGTCGGCGTCGGCGGCGGCGCGAACGGCGGCGGCGCCGGCGGTGGTTT
CGCCGGAGGGGCTGATGGCGGCGGCGGCGGGCTTATCGCCGGGGGTTCGT
CTCGGCCGTTTTACGTGACGGTATCGCTGGGCGGCTTGACGTCGAAGACG
TCTGCACGGCAGGGGTTCTCTCCGACGTTCACCGAGGTGTTTCCTCTGGG
GTGCGACTGTCCGATCAGGGGGGCGTATCTCACCATTGCCGTTGTCGACA
GGTGAGCAAGAAGAACATAATGGAAAGAGTGGTGTTAGTGTTGGGGTTAG
TGTTGGTGATGGTGGCGGCGGTGGAGGAAAGATGGGATAATAGAGAGAGG
GAGGGAAGGAGAGAGGGGAGAGAGAGAGAGACAGACAGACAGACAGACAG
ACAGCCAGACAGAGAACATCAGAGAGACAGAGAGAAATTGCATGCCGCGA
AGGGGAGCATTCCAAATGGATTGTACACCAGTCACAGTTATTATTGATGG
CCGTTTGTTTGTCCCGATGGACGGAAGAGCTCCTGGTTGTCGTGTGAATA
TTTAAGCCGACCTGTAAATTGTTCCACCAACACAGCTGCTTCGTGACACC
ATAATCTCCCTTGAACCTAAGCCCCCCCCTTTTCCGCACCGCCGACCCAA
CTACCCAGCTTCGAAACGGGCCGCAGCGGACGCGGTGACCGCGTTGTTGG
CGAGGTACATCTCCCCCTTGAGGCGGCGCAACTAGTTCCCGGGACGTCCG
GCCTCGATGACAACGCTGACATGTTTTCCTCCTCGTCGTCCGGCGGCGGC
TGGGACGGGGGCAGCGGGCCCGCCTACCGCCTCCGCGGGGACTGGGAGCT
GCAGGGCGCTCTGGGAGGACCGCTCTGCGGTGCCAGGGTGGGGGCGGACA
TCATGGTGCACGGCCCGCCGTCGCCGAGCTCGGCCGCTGGCCGGCTGAGG
AGGAGGAGGAGGGAGTCGGTCGGGTGGTACGCTCGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:88792..92777+

>mRNA_Ecto-sp6_S_contig106.1030.1 ID=mRNA_Ecto-sp6_S_contig106.1030.1|Name=mRNA_Ecto-sp6_S_contig106.1030.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:88792..92777+ (Ectocarpus species6 EcLAC_371)
ATGGCCCAGGACCACGAAATGCTCCAACTGCTGTTGAGATCCGGAGCGAT
GTGGGCATCCAGCCTCAACATTCCTTGGTTCCTTGCCGGAGCCGGCGTAG
GCGTACCGGCTGCCGTGGGGACTGTGACCACCGGAAACAGCAAGCTTTTG
AGTCTGGCCACAACCTTGGGAGGCGTGTTGGGCGGCGTCGCGGCCGACCG
ACTTTCGACCACGATTTCGGAGAGCTTAGCGGGCAACGATGTCGGCGGCG
GCGGCGGCGGTGGCTGCGAGTTCACCTGCTACGACCTCCTCACGAAGGGC
GTGGGCCCGGCCTGCCTCCTGCTCGTCGTGCTCAGCAGGAGCATCCGCTC
GGAGCCCTCAGTGGCCGTCAAGCCTGCCGCCGCCGTCGCCCTCGCTGCCC
TCCTCCTGGAGCCCCTCTTCAGCGCCTACGTCCTCGGGGGCGGCGGCGCC
AGCAACAGCACCGTCGCCCCTGCTGCCGCTGCCGCTACCGCTACCCGGTC
CGGCTTGGCCCGCTTGCTCCTGCTCCGCGACGTTCCGCACCGCGTCTTGG
GTCAGGTCGGCGGCGGCGGGGGGCGGAGGAGGAGCGCCGCGGCAGCGGCG
ACGGCGGCTTCGGCTTCGGCGGCAGCTTCGGCGGCGGCGGCGCTGGTGGC
CCGGGCGCGCTGGCTGACAGCGGGCGCGCAGCTGGTGCTCTGGGCGGCCG
TGGTCCTGGCCTACGCCAACGTGTCCCTGCGGCTCTCCCGGGGTCCCCCC
GGGAAGACGGTGGGCGGTTACATGTCCGCCCTACGCTCCCTCGCGGCCAA
GAAGCGCGGCACCGGCGGCTGGGTGAGGATAGACCAGTGGGGCACCGGCG
GGGGCGGGGGGGGCGGCGGTTGTGACGGAAGCGCCGGCGGCGGGGGGGCG
CGGGCGAATGGCTTGCTCGGGTCTTTGTACGAGACGCTGATGGGTGGGGG
AGGGTGGGGGAGGCGGCCGCATCTGCCCCGAGGCTATGGCGCTTAG
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