mRNA_Ecto-sp6_S_contig106.1026.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1026.1
Unique NamemRNA_Ecto-sp6_S_contig106.1026.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig106.1026.1 vs. uniprot
Match: D7G4A4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A4_ECTSI)

HSP 1 Score: 995 bits (2573), Expect = 0.000e+0
Identity = 538/567 (94.89%), Postives = 546/567 (96.30%), Query Frame = 1
Query:    1 MPAASDVENAGDYFEVKQGSSELRKLAFTVEDASYSCPDGPSSSLGETGRTSCWKGGAGENGWVLLRLHEKALLSFLRVRNRSSSEISVSISVRGKRRRDFVEVKRGVGLAHGTRTDVKVGHLPCVYVRVECRRRKTGSGGVSLYELVPVGVPARCVGLFMGPCMEDLTYKSTERLLFGPSLRTSHAPVCHRAALERLILPPSFLRPAGGAMNPYDPDPVRKGPASTGAGVAHALLHTHRLLSPTPSPRLVPGGEGLRGPHFPPFPXXXXXXXXXXXATSGVYFFRGGRKDELPIDVGRRQGRGGVVSFDQGYSPASHPYPPRGEENXXXXXXXXXXAGVGRRGGVPLPYQGMTARASHHPFRNLTHGPVASAAGVAGTPADRNADPGRENETEGRLAAPRLEQQPEPRHSYSSSGNGGGHFFGARTGAGDRRPSGGSVAFARPFPGHRWGVEGRDEGGAGVDSSGNPDGLRRQKSIGNEERRKDSFGPDFGYDEARTGERNSSPYPLGSHSEXXXXXXXX---GDSLSDYAGYLRGNHSRDNAGVSSGGSERGGVQSGPHRHAAVA 1692
            MPAASDVENAGDYFEVKQGSSELRKLAFTVEDASYSCPDGPSSSLGETGRTSCWKGGAGENGWVLLRLHEKALLSFLRVRNRSSSEIS+SISVRGKRRRDFVEVKRGVGLAHGTRTDVKVGHLPCVYVRVECRRRKTGSGGVSLYELVPVG+PARCVGLFMGPCMEDLTYKSTERLLFGPSLRTSHAPVCHRAALERLILPPSFLRPAGGA+NPYDPDPVRKGPASTGAGVAHALLHTHRLLSPTPSPRL PGGEGLRGPHF    XXXXXXXXXXXATSGV+FFRG RKDELPIDVGRRQGRG VVSF+Q YSPASHPYPPRGEE+XXXXXXXXX AGVGRR GVPLPYQGMTARASHHPFR+LTHGPVA+AAGVAGTPADRNADPGREN TEGRLAAPRLEQQP PRHSYSSSGNGGGHFFGARTGAGDRRPSGGSVA ARPFP HRWGVEGRDEGGAGVDSSGN DGLRRQKSIGNEERRKDSFGP FGYDEARTG RNSSPYPLGSHSEXXXXXXXX   GDSLSDYAGYLRGNHSRDNA VSSGGSERGGVQSGPHRHAAVA
Sbjct:    1 MPAASDVENAGDYFEVKQGSSELRKLAFTVEDASYSCPDGPSSSLGETGRTSCWKGGAGENGWVLLRLHEKALLSFLRVRNRSSSEISISISVRGKRRRDFVEVKRGVGLAHGTRTDVKVGHLPCVYVRVECRRRKTGSGGVSLYELVPVGIPARCVGLFMGPCMEDLTYKSTERLLFGPSLRTSHAPVCHRAALERLILPPSFLRPAGGAVNPYDPDPVRKGPASTGAGVAHALLHTHRLLSPTPSPRLAPGGEGLRGPHFXXXXXXXXXXXXXXXATSGVHFFRGERKDELPIDVGRRQGRGAVVSFEQDYSPASHPYPPRGEEDXXXXXXXXX-AGVGRRVGVPLPYQGMTARASHHPFRHLTHGPVANAAGVAGTPADRNADPGRENATEGRLAAPRLEQQPMPRHSYSSSGNGGGHFFGARTGAGDRRPSGGSVASARPFPVHRWGVEGRDEGGAGVDSSGNLDGLRRQKSIGNEERRKDSFGPGFGYDEARTGGRNSSPYPLGSHSEXXXXXXXXXXXGDSLSDYAGYLRGNHSRDNARVSSGGSERGGVQSGPHRHAAVA 566          
BLAST of mRNA_Ecto-sp6_S_contig106.1026.1 vs. uniprot
Match: A0A6H5JC74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC74_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 6.080e-63
Identity = 111/125 (88.80%), Postives = 114/125 (91.20%), Query Frame = 1
Query: 1012 AGVGRRGGVPLPYQGMTARASHHPFRNLTHGPVASAAGVAGTPADRNADPGRENETEGRLAAPRLEQQPEPRHSYSSSGNGGGHFFGARTGAGDRRPSGGSVAFARPFPGHRWGVEGRDEGGAGV 1386
            AGVGRRGGVPLPYQGMTA ASHHPFRNLTHGPVA+AAGVAGTPADRNADPGRENETEGRLAAP LEQQPEPRHSYSSSG+GG HFF ARTG GDRRPSGGS A ARPF  HR GVEGR+EGGAG 
Sbjct:   26 AGVGRRGGVPLPYQGMTAWASHHPFRNLTHGPVANAAGVAGTPADRNADPGRENETEGRLAAPPLEQQPEPRHSYSSSGDGGVHFFRARTGGGDRRPSGGSNASARPFLVHRRGVEGREEGGAGA 150          
BLAST of mRNA_Ecto-sp6_S_contig106.1026.1 vs. uniprot
Match: D7G4C0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C0_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.440e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  481 MGPCMEDLTYKSTERLLFGPSLRTSHAPVCHRAALE 588
            MGPCMEDLTYKSTERLLF PSLRTSHAPVCHRAALE
Sbjct:    1 MGPCMEDLTYKSTERLLFDPSLRTSHAPVCHRAALE 36          
BLAST of mRNA_Ecto-sp6_S_contig106.1026.1 vs. uniprot
Match: K3XB97_GLOUD (XRCC1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XB97_GLOUD)

HSP 1 Score: 82.4 bits (202), Expect = 1.000e-13
Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 1
Query:   46 VKQGSSELRKLAFTVEDASYSCPDGPSSSLGETGRTSCWKGGAGENGWVLLRLHEKALLSFLRVRNRSSSEISVSISVRGKRRRDFVEVKRGVGLAHGTRTDVKVGHLPCVYVRVECRRRKTGSGGVSLYELVPVGVPARCVGLFMGPCMEDLTYKSTERLLFGPSLRTS 555
            VK     +  + F V  AS       +++L E    + W+  A     V+L L  K LLS +R+ N+++  + VS++V   R R +V VKR   + H     +K+G +PC ++R+E  R    S  ++++ ++P+GVP   +    GP + +L   +TE LLFG SLR S
Sbjct:   78 VKTEDFGVGPVEFHVRHASGMASSCTTANLLEYSTKTWWQSYARTKETVVLALTSKTLLSEIRILNKNACAVDVSVAVEN-RPRSYVSVKRMQMMPHAREVSIKIGFIPCQFIRLEFMRHSHAS--IAVHGILPLGVPCHEIEDGSGPSLCNLLNHATENLLFGSSLRAS 244          
BLAST of mRNA_Ecto-sp6_S_contig106.1026.1 vs. uniprot
Match: A0A5D6YRF0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YRF0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.460e-12
Identity = 52/160 (32.50%), Postives = 87/160 (54.37%), Query Frame = 1
Query:   76 LAFTVEDASYSCPDGPSSSLGETGRTSCWKGGAGENGWVLLRLHEKALLSFLRVRNRSSSEISVSISVRGKRRRDFVEVKRGVGLAHGTRTDVKVGHLPCVYVRVECRRRKTGSGGVSLYELVPVGVPARCVGLFMGPCMEDLTYKSTERLLFGPSLRTS 555
            + F V  AS +      ++L +    SCW+  +     V+L L +K+LLS +R+ N+++  + VS++V   R R +V VKR   +AH     VK+G +PC +VR+E  R    S  ++++ ++ +GV    +    GP + +L   +TE LLFG SL  S
Sbjct:   67 IGFRVRRASGAAGGFQPANLQQYSARSCWQSFSRAKESVVLELDDKSLLSEIRILNKNACAVDVSLAVED-RPRSYVTVKRMQTMAHSREVGVKIGFIPCRFVRLEFSRHSHAS--IAVHGVMLLGVRCSEIEDGSGPSLCNLLSHATENLLFGSSLHAS 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4A4_ECTSI0.000e+094.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JC74_9PHAE6.080e-6388.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4C0_ECTSI1.440e-1497.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3XB97_GLOUD1.000e-1331.76XRCC1_N domain-containing protein n=1 Tax=Globispo... [more]
A0A5D6YRF0_9STRA1.460e-1232.50Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:47981..52750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1006.5
Seed ortholog evalue4.9e-291
Seed eggNOG ortholog2880.D7G4A4
Model size1695
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs28INW@1,2S5NB@2759
Cds size1695
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1026.1prot_Ecto-sp6_S_contig106.1026.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 47981..52750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348754.7598844-CDS-Ecto-sp6_S_contig106:47980..491601682348754.7598844-CDS-Ecto-sp6_S_contig106:47980..49160Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 47981..49160 -
1682348754.7771394-CDS-Ecto-sp6_S_contig106:49777..498551682348754.7771394-CDS-Ecto-sp6_S_contig106:49777..49855Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 49778..49855 -
1682348754.7885566-CDS-Ecto-sp6_S_contig106:50352..504791682348754.7885566-CDS-Ecto-sp6_S_contig106:50352..50479Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 50353..50479 -
1682348754.7986612-CDS-Ecto-sp6_S_contig106:51053..511601682348754.7986612-CDS-Ecto-sp6_S_contig106:51053..51160Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 51054..51160 -
1682348754.8078446-CDS-Ecto-sp6_S_contig106:51638..517441682348754.8078446-CDS-Ecto-sp6_S_contig106:51638..51744Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 51639..51744 -
1682348754.8162417-CDS-Ecto-sp6_S_contig106:52653..527501682348754.8162417-CDS-Ecto-sp6_S_contig106:52653..52750Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 52654..52750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1026.1

>prot_Ecto-sp6_S_contig106.1026.1 ID=prot_Ecto-sp6_S_contig106.1026.1|Name=mRNA_Ecto-sp6_S_contig106.1026.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=565bp
MPAASDVENAGDYFEVKQGSSELRKLAFTVEDASYSCPDGPSSSLGETGR
TSCWKGGAGENGWVLLRLHEKALLSFLRVRNRSSSEISVSISVRGKRRRD
FVEVKRGVGLAHGTRTDVKVGHLPCVYVRVECRRRKTGSGGVSLYELVPV
GVPARCVGLFMGPCMEDLTYKSTERLLFGPSLRTSHAPVCHRAALERLIL
PPSFLRPAGGAMNPYDPDPVRKGPASTGAGVAHALLHTHRLLSPTPSPRL
VPGGEGLRGPHFPPFPDAATAAAAAAGATSGVYFFRGGRKDELPIDVGRR
QGRGGVVSFDQGYSPASHPYPPRGEENSGGGGGGSSSAGVGRRGGVPLPY
QGMTARASHHPFRNLTHGPVASAAGVAGTPADRNADPGRENETEGRLAAP
RLEQQPEPRHSYSSSGNGGGHFFGARTGAGDRRPSGGSVAFARPFPGHRW
GVEGRDEGGAGVDSSGNPDGLRRQKSIGNEERRKDSFGPDFGYDEARTGE
RNSSPYPLGSHSEEEEEEEEEGDSLSDYAGYLRGNHSRDNAGVSSGGSER
GGVQSGPHRHAAVA*
back to top

mRNA from alignment at Ecto-sp6_S_contig106:47981..52750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1026.1 ID=mRNA_Ecto-sp6_S_contig106.1026.1|Name=mRNA_Ecto-sp6_S_contig106.1026.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4770bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:47981..52750- (Ectocarpus species6 EcLAC_371)
ATGCCTGCTGCTTCTGATGTTGAAAATGCTGGCGACTACTTCGAGGTGAA GCAAGGGTCCTCTGAGTTGAGGAAGCTGGCTTTCACGGTCGAAGATGGTG AGCTATATGTCTTCGTACGTTTCAGAGATCGCTGTTCGCGGAATTGCATA ACGGTATTTGAGTCCATGCGTTTACGAGTCTACTGCTGTAGCACACCATC ATGCACAACTATCTCCCTCTCTCTCTGTAACCGTTCTGACATGTATGGCG AACCCTGTGTTGGGTTCGCACGCGAATGGTTGTTTTTCAGGAGCGTGCTT TCGATTTTCGGTGCGATTGGTTGCTGTCCTCTCCGCATGTCTCACAGCTG CCTTAATACAACGGAAGATATCACTCACATCACATGAAGCCAACCATTGT ATGCATAGAAAGCAATGTAACGGTGCCATGGCGTCACAAATGTTCCCTGA ATGCACCAGATTATGTGTTTCATCGTCTGACATACAAGTAGGAAGTTTTC TTCAATCCCCACTCAGGCCGTGTGTGCGGGGGTGGCTATGTAGGTCAGCG CGAAATACACAGACGGAGAACACGCCATGCGAAGATACAACAGCTTCGTT GATTCCTCGCTGAAAAAATAGAGTGATACGTATGTTGCTTATGTCATATC TTCTCGAGTCAGTTTGGGATGAAGCGTCTTCCCCACAACAGAAAACCGGC ATACGAAACGTGCACACACTACTGTACTACTATTACCACTTATACTACAT GTATGCATGCAACATCGTAAACGAGGCAGCGACAACTGCCGCGTATCTAA TAGCCGCTCACTCGAACTGGCCTTGCCAAAAAACGAAAAATCATTTCCAA GTGACCAGTTCCCCAGTAATCTCCACGCCACGAGGTCAATCTATGTAAGC TGCGGCGCATCCATCCTTTCTCCAGAACCATAGAGTCTTCAAAGACTACA ACAGCAACAACAAGGACGCTTTTCGACTACGTTCCCCTTGCACGCTACCT ACACAGCGAGCTACAGCTGTCCGGATGGCCCTTCGTCGAGCCTTGGGGAG ACAGGCAGAACGAGCTGTTGGAAAGGGGGCGCAGGGGAAAACGGCTGGGT GCTTCTGAGGCTGTGAGTCCTATTTCTGCTTGCTCCGTTGCAACGCGGCC ATGACGTTGCCTCCCGTGTAGTCATCGTTTTCTAGCACTATGATGGAAGA ACGTGGCACAAATATGAACCCCAAGACCAAGATCACCTCCGACAAATTGA TTGAAATCACATGCATGCCTTCCCCAAAACCAAACGTTGGAAATAATAGT TAAAATCCGATTTTGAACGAGCGGGCAACCAATGTAAGCTGAAGGTGGTT GCTGTTGTGGCGGTGTTGCTCTGCTGCACGGCGCCCTCTGCCCGAGGCGG TGGCGAAACTGCGTCCCCTTCCGGTAATCCATCCATCGGTCTTGAAAACG GTGAAACGGCCGGTAAACCGGCGGTAGTGTCCCCACACCGTGCGTTGAAT CGACAGTAAGCGGCCAACAGACCAATGGAGGATGGAGTTACGTGTCGCAC AGGCACCCAACAATATGCCCCTTTGTCCCCGTTCTAGCAGGCATGAAAAG GCGTTGCTATCGTTTTTGAGGGTTCGCAACCGATCCTCTTCGGAGATTTC CGTATCGATCTCCGTCCGGGGGAAACGACGGAGAGACTTCGTTGAGGGTG AGTTGAGCTCTTGTGGCCATTGCTGATGCTGATGCTGATGCTGCTGCTGT TGCTGATGCTGATGCTGATGCTGATGCTGATGCTGCTGCTGTTGCTGCTT CAAATTTGTCTCCCGCGCTGGTTGCTGGTTGCTTGGAACAGCCTTGTGAA ATGGTCGGGGGAAGGGTTGGAGAGAAGGGAGATGTCGAGTACTATCCTAA TTGCACCCCCGGTAGATGTAGGTTCACGGTTCACACTAACGCACGCACAC AGTACTTCGCTTTTAGCGGCACTTAAAACTTGCTTGTCTTCCCGCTCGCG CCCCCTCGCGTTTGTCTTGTTTTGAAGCCTACCCCAACGCCAGAGTTCCG CTACATTGGTTGCCGCACTTCTTGCAGGTGGTTCAAGTCTTGATGGTGGC GCAGTAAAGCGACAAATCCGACCGCCCCTCCTCGAGACCGTGTAAAACTG GCGACGAGTGTTAAGAGCAGCGTTTTTCCGAGATCCTTTCGGCCCTCTCT GTTGTTGACACCACTCTTTTCGCCCCATCGGGGTGTGTGGTGTTGTTTTT TGTGACGGCGGTGTTTTGCAGTGAAGCGAGGGGTGGGACTGGCGCACGGC ACCCGTACGGACGTGAAGGTCGGACACCTTCCCTGCGTCTACGTTCGGGT GGAGTGCCGCCGAAGGAAGACGGGTTCCGGCGGCGTATCCTTATACGAGT GAGGCGACCAGAATACATGCTCGCTGTGCTATTCCCGCCATACGGGACCC GGTTCAATTGGACTTGGACGTGCTGCTTGAATGGTTAATTTCTGAGGCAT TGGTTCCGTAGTTCTTGTTGTCGCCGTCGTTGTCTATTGCTGTTGTCCTG AATTCTCTCTGTGTGCGAATCGCGGCCGTGCGTGCCGTGTTGGTTCCGTG TGTGCTTCACGGCAAGGAAGACACGCCAGCAGCGGACGGGATACCGACTG ACGACAAGAAACAGTCACACGTACCGATCACGTCCTCGTGTGATGACCTA CACTGTTGACACCCGTAGTCGTTTTGCCTTGGAAGAGGAGTGGATGGGAC GTACTGGACTGGAGGGAGGCCAGATCAATCATGTCCTGTTATCACGAACA CGTACACTGACTCGGCGCGACGAGTTGGATTCGCTAGGCTTTGATCGACC CAAGCCGATTTTTGTGTCCCTCATTTTTGCCGTGCTCTCCTGCAGGCTTG TACCGGTCGGAGTCCCAGCCAGGTGCGTGGGGCTGTTCATGGGACCGTGC ATGGAAGACCTGACGTACAAGAGGTGAGACGAGCTACTGTATGTAGGGGA CAGGAGGTGAAAAACATCGTGTCACGACCACACCGATACCCGGATCACTT TCGACCGGCACGCTGCAAGTCACACCCATACGAAAAAAGACGTCGAGACA TGTTTTTTTCTGTTGCAATACGATACCCCTTTTTTCTTGAGCCTGTCGCT GAAGACACGCCTCGTTTCACCTAGGCCCTACCCCACAACGCCACGATCCT GGAACGGACGATTTTCCCCCGTCTTCGACAAACCTGTGGCAGCGCGGAGC GTCTCTTGTTCTTGGCGGTCGCTCAAGACACGACTCCCGTTGGAAGCTCC CAAAAGCCGATAACTGCTGTACCCCCGAAACGTGGCACGTGCCTATGCCT ATTTTCCCCGACGTGGCCCGAACTCGCGTTTACCGAGTGCCAGGGCCAAC GTTTTGAGGACTGCGGGCGTGCGTGACGATGAGCACGCCCTACTCCCACC CAACCCCTACTTTTCGCGCCACGAAACGCCTCAATCTCGCAGCCAAATAC ATGGCAACAACCTCGAACCAAAGCCCTCAAAACAGGGGCAATCGACCTTC CGCTAATCTTTGCATGCCCCCCCCCTCCCTCCTATCACAGCACGGAACGC CTCTTGTTCGGCCCATCGCTGAGGACGAGCCACGCCCCGGTCTGCCACCG CGCCGCGCTAGAGCGACTGATACTGCCGCCGTCCTTCCTCCGGCCCGCGG GGGGCGCCATGAATCCCTACGACCCCGACCCCGTCCGAAAGGGCCCCGCC AGCACCGGCGCCGGCGTTGCGCACGCACTGTTGCATACTCACCGGTTGCT GTCACCGACACCGTCGCCGCGGTTAGTGCCAGGAGGGGAAGGACTCCGTG GTCCTCATTTCCCGCCTTTTCCGGATGCCGCGACAGCCGCCGCCGCCGCT GCCGGTGCTACTTCTGGGGTATATTTTTTTCGCGGCGGGAGAAAAGACGA GCTGCCGATTGATGTCGGGCGGAGGCAAGGCCGTGGGGGTGTAGTCTCGT TTGACCAGGGTTACTCACCTGCTTCGCACCCGTATCCCCCCCGCGGGGAA GAAAACAGCGGCGGCGGCGGCGGCGGCAGCAGTAGCGCCGGAGTCGGCCG GAGAGGTGGCGTACCCCTCCCCTACCAGGGGATGACAGCACGGGCCTCCC ATCATCCCTTTCGAAACCTTACCCATGGCCCGGTTGCCAGCGCCGCCGGT GTTGCTGGCACTCCTGCTGATCGCAACGCTGATCCCGGGAGGGAAAATGA AACTGAAGGGCGATTGGCGGCTCCTCGGTTAGAGCAGCAGCCCGAGCCCC GACATTCGTACAGCAGTAGCGGTAACGGGGGAGGTCATTTCTTTGGGGCG AGGACGGGCGCCGGTGATCGACGACCGTCGGGTGGTTCCGTCGCATTCGC TCGTCCTTTTCCGGGGCATCGGTGGGGCGTCGAAGGAAGGGACGAAGGCG GAGCGGGTGTAGACAGTAGTGGCAATCCCGACGGCTTGAGAAGACAAAAG AGCATCGGGAATGAAGAGAGGCGGAAAGATAGCTTTGGTCCTGATTTTGG CTACGACGAAGCGAGGACGGGAGAGAGGAACAGCAGTCCCTACCCTCTCG GGAGTCATTCGGAGGAGGAGGAGGAAGAGGAGGAAGAGGGAGACAGCTTG TCAGACTACGCGGGGTATTTAAGGGGGAACCACAGCAGGGACAATGCTGG GGTTTCTTCGGGTGGTAGCGAACGGGGTGGTGTCCAGAGTGGACCGCATC GCCATGCAGCCGTGGCTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:47981..52750-

>mRNA_Ecto-sp6_S_contig106.1026.1 ID=mRNA_Ecto-sp6_S_contig106.1026.1|Name=mRNA_Ecto-sp6_S_contig106.1026.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1695bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:47981..52750- (Ectocarpus species6 EcLAC_371)
ATGCCTGCTGCTTCTGATGTTGAAAATGCTGGCGACTACTTCGAGGTGAA
GCAAGGGTCCTCTGAGTTGAGGAAGCTGGCTTTCACGGTCGAAGATGCGA
GCTACAGCTGTCCGGATGGCCCTTCGTCGAGCCTTGGGGAGACAGGCAGA
ACGAGCTGTTGGAAAGGGGGCGCAGGGGAAAACGGCTGGGTGCTTCTGAG
GCTGCATGAAAAGGCGTTGCTATCGTTTTTGAGGGTTCGCAACCGATCCT
CTTCGGAGATTTCCGTATCGATCTCCGTCCGGGGGAAACGACGGAGAGAC
TTCGTTGAGGTGAAGCGAGGGGTGGGACTGGCGCACGGCACCCGTACGGA
CGTGAAGGTCGGACACCTTCCCTGCGTCTACGTTCGGGTGGAGTGCCGCC
GAAGGAAGACGGGTTCCGGCGGCGTATCCTTATACGAGCTTGTACCGGTC
GGAGTCCCAGCCAGGTGCGTGGGGCTGTTCATGGGACCGTGCATGGAAGA
CCTGACGTACAAGAGCACGGAACGCCTCTTGTTCGGCCCATCGCTGAGGA
CGAGCCACGCCCCGGTCTGCCACCGCGCCGCGCTAGAGCGACTGATACTG
CCGCCGTCCTTCCTCCGGCCCGCGGGGGGCGCCATGAATCCCTACGACCC
CGACCCCGTCCGAAAGGGCCCCGCCAGCACCGGCGCCGGCGTTGCGCACG
CACTGTTGCATACTCACCGGTTGCTGTCACCGACACCGTCGCCGCGGTTA
GTGCCAGGAGGGGAAGGACTCCGTGGTCCTCATTTCCCGCCTTTTCCGGA
TGCCGCGACAGCCGCCGCCGCCGCTGCCGGTGCTACTTCTGGGGTATATT
TTTTTCGCGGCGGGAGAAAAGACGAGCTGCCGATTGATGTCGGGCGGAGG
CAAGGCCGTGGGGGTGTAGTCTCGTTTGACCAGGGTTACTCACCTGCTTC
GCACCCGTATCCCCCCCGCGGGGAAGAAAACAGCGGCGGCGGCGGCGGCG
GCAGCAGTAGCGCCGGAGTCGGCCGGAGAGGTGGCGTACCCCTCCCCTAC
CAGGGGATGACAGCACGGGCCTCCCATCATCCCTTTCGAAACCTTACCCA
TGGCCCGGTTGCCAGCGCCGCCGGTGTTGCTGGCACTCCTGCTGATCGCA
ACGCTGATCCCGGGAGGGAAAATGAAACTGAAGGGCGATTGGCGGCTCCT
CGGTTAGAGCAGCAGCCCGAGCCCCGACATTCGTACAGCAGTAGCGGTAA
CGGGGGAGGTCATTTCTTTGGGGCGAGGACGGGCGCCGGTGATCGACGAC
CGTCGGGTGGTTCCGTCGCATTCGCTCGTCCTTTTCCGGGGCATCGGTGG
GGCGTCGAAGGAAGGGACGAAGGCGGAGCGGGTGTAGACAGTAGTGGCAA
TCCCGACGGCTTGAGAAGACAAAAGAGCATCGGGAATGAAGAGAGGCGGA
AAGATAGCTTTGGTCCTGATTTTGGCTACGACGAAGCGAGGACGGGAGAG
AGGAACAGCAGTCCCTACCCTCTCGGGAGTCATTCGGAGGAGGAGGAGGA
AGAGGAGGAAGAGGGAGACAGCTTGTCAGACTACGCGGGGTATTTAAGGG
GGAACCACAGCAGGGACAATGCTGGGGTTTCTTCGGGTGGTAGCGAACGG
GGTGGTGTCCAGAGTGGACCGCATCGCCATGCAGCCGTGGCTTAG
back to top