mRNA_Ecto-sp6_S_contig105.1023.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig105.1023.1
Unique NamemRNA_Ecto-sp6_S_contig105.1023.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.270e-56
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = 3
Query:    9 GDGYCEQQNNNAECGYDGGDCCECTCQTQGDDDYYSWGCNKGYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCGY 275
            GDG+C Q NNNAECGYDGGDCCECTCQTQ DDDYYSWGCNK YMACIDPDASCVDDDDVTAEMVENCEWV GIGDGYC+DGNNK +C +
Sbjct:   37 GDGFCTQHNNNAECGYDGGDCCECTCQTQSDDDYYSWGCNKDYMACIDPDASCVDDDDVTAEMVENCEWVAGIGDGYCHDGNNKAECDF 125          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: D7G6M7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M7_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.160e-44
Identity = 68/89 (76.40%), Postives = 71/89 (79.78%), Query Frame = 3
Query:    6 YGDGYCEQQNNNAECGYDGGDCCECTCQTQGDDDYYSWGCNKGYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCG 272
            YGDGYC   NNNAECGYDGGDCCECTCQTQ DDDYYS  C+K YMACIDPDASCVDDDDVT E+V NC   G IGDG C  GNN  +CG
Sbjct:   36 YGDGYCTPPNNNAECGYDGGDCCECTCQTQSDDDYYSGRCDKEYMACIDPDASCVDDDDVTIELVANCSHAGAIGDGICEKGNNNPECG 124          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 8.060e-42
Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 3
Query:    9 GDGYCEQQNNNAECGYDGGDCCECTCQTQGDDDYYSWGCNKGYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCGYDGGDCCECTCVV 311
            G+GYC+  NN+ EC YDGGDCCECTC++   DD Y + C  G  ACIDP+A CVDDDD TAE  E+C WV  IGDG C+D NNKE+CG+DGGDCC+CTCVV
Sbjct:  243 GNGYCDDSNNSPECAYDGGDCCECTCESH--DDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECGFDGGDCCDCTCVV 341          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.410e-41
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = 3
Query:    3 GYGDGYCEQQNNNAECGYDGGDCCECTCQTQGDDDYYSWGCNKGYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCGYDGGDCCECTC 305
            G GDG+C+Q NNN  CGYDGGDCCECTC +  DDD   W C + Y ACIDPDA CVDDDD+TA MVE C WV G+GDG+C++ NN E CGYDGGDCCECTC
Sbjct:   77 GLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDD-DWAC-RNYNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTC 175          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 5.740e-41
Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:    6 YGDGYCEQQNNNAECGYDGGDCCECTCQTQGDDDYYSWGCNKGYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCGYDGGDCCECTC 305
            +GDG+C+Q+NNN  CGYDGGDCCECTC    DDDY S   N    ACIDP A CVDDDDVT +MVENC +VG +G+G+C++ NN E CGYDGGDCCECTC
Sbjct:   61 FGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDY-SCAANS---ACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTC 156          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.770e-39
Identity = 72/105 (68.57%), Postives = 82/105 (78.10%), Query Frame = 3
Query:    3 GYGDGYCEQQNNNAECGYDGGDCCECTCQTQ-GDDDYYSWGCNK-GY-MACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCGYDGGDCCECTCV 308
            G+GDGYC+ QNNNAECGYDGGDCCECTCQ   GDDD   W C+K GY  ACIDPDA CVDDDD+T E+ +NC     +G+GYC++ NN E CGYD GDCCECTCV
Sbjct:   28 GFGDGYCQLQNNNAECGYDGGDCCECTCQNPWGDDD--EWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCV-TSDLGNGYCDEDNNNEICGYDFGDCCECTCV 129          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.020e-38
Identity = 70/110 (63.64%), Postives = 81/110 (73.64%), Query Frame = 3
Query:    9 GDGYCEQQNNNAECGYDGGDCCECTC-------QTQGDDDYYSWGCNKGY--MACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCGYDGGDCCECTCVV 311
            GDGYC+Q NNN  CGYDGGDCCECTC       Q+  DDD   W C+ G    ACIDP A CV+DDD+TA+MVENC +V G+GDG+C++ NN E CGYDGGDCCECTCV 
Sbjct:   60 GDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDD-DWLCSSGGSGFACIDPAAPCVEDDDITADMVENCGYVRGLGDGWCHEENNNELCGYDGGDCCECTCVA 168          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: D7FI91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI91_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.350e-37
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   51 GYDGGDCCECTCQTQGDDD-YYSWGCNKGYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCG 272
            GYDGGDCCECTCQTQ DDD YY   C+  YMAC+DPDASCVDDDDVT EMVENCE+V  IGDGYC+DGNNK +CG
Sbjct:   29 GYDGGDCCECTCQTQSDDDFYYPENCDADYMACVDPDASCVDDDDVTVEMVENCEYVHDIGDGYCDDGNNKAECG 103          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.040e-36
Identity = 61/101 (60.40%), Postives = 72/101 (71.29%), Query Frame = 3
Query:    3 GYGDGYCEQQNNNAECGYDGGDCCECTCQTQGDDDYYSWGCNKGYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCGYDGGDCCECTC 305
            G GDG+C++ NNN  C YDGGDCCECTC+   DDD   W C     AC+DP+A CVDDD VT +M+ENC W  GIGDGYC++  N  +C YDGGDCC CTC
Sbjct:   62 GIGDGWCDEDNNNELCAYDGGDCCECTCEGSEDDD---WHCRN--FACVDPNAPCVDDDSVTIDMIENCSWSTGIGDGYCSENLNTPECAYDGGDCCSCTC 157          
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 8.670e-36
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 3
Query:    9 GDGYCEQQNNNAECGYDGGDCCECTCQTQGD---DDYYSWGCNKGYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCNDGNNKEQCGYDGGDCCECTC 305
            GDG+C++ NNN  CGYDGGDCCECTC+ +     DD + + C +   +CIDP+A+CV DDD+T +M ENC +V GIG+G+C+  NNKE+CGYDGGDCC CTC
Sbjct:  100 GDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCRE--FSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 199          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig105.1023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J7_9PHAE1.270e-5687.64LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6M7_ECTSI1.160e-4476.40LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEP6_ECTSI8.060e-4265.35Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE1.410e-4169.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S4_ECTSI5.740e-4167.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI2.770e-3968.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE2.020e-3863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI91_ECTSI1.350e-3778.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI2.040e-3660.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE8.670e-3658.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig105contigEcto-sp6_S_contig105:616584..618506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons4
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348754.2241209-CDS-Ecto-sp6_S_contig105:616583..6166341682348754.2241209-CDS-Ecto-sp6_S_contig105:616583..616634Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 616584..616634 +
1682348754.2334442-CDS-Ecto-sp6_S_contig105:616945..6169831682348754.2334442-CDS-Ecto-sp6_S_contig105:616945..616983Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 616946..616983 +
1682348754.242327-CDS-Ecto-sp6_S_contig105:617282..6174631682348754.242327-CDS-Ecto-sp6_S_contig105:617282..617463Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 617283..617463 +
1682348754.2511969-CDS-Ecto-sp6_S_contig105:618464..6185061682348754.2511969-CDS-Ecto-sp6_S_contig105:618464..618506Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 618465..618506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig105.1023.1prot_Ecto-sp6_S_contig105.1023.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig105 616584..618506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig105.1023.1

>prot_Ecto-sp6_S_contig105.1023.1 ID=prot_Ecto-sp6_S_contig105.1023.1|Name=mRNA_Ecto-sp6_S_contig105.1023.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=104bp
VATETGTASSKTTTQNAATTAATAASALARLKAMTTTTLGDATKATWPAS
TRTPLASTMMTLPLKWWRTVNGLAVSETVTATMGTTKNSAATTAVTAASA
HAW*
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mRNA from alignment at Ecto-sp6_S_contig105:616584..618506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig105.1023.1 ID=mRNA_Ecto-sp6_S_contig105.1023.1|Name=mRNA_Ecto-sp6_S_contig105.1023.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1923bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:616584..618506+ (Ectocarpus species6 EcLAC_371)
GTGGCTACGGAGACGGGTACTGCGAGCAGCAAAACAACAACGCAGAATGC GGTATGTGTACTCTCCCTCCTGGTGGTGTGACGTGCTCATCTTTGGAAAT ATTGTTCAAGAGTGACCTTCTGTCGCTCATTCCTGCGAGTGGTATGCATA GCTGCAAACCCTGCTGTGCGATGAGCAATCGCCCTTCGGTTAGATTAGTA CGTGCTGAAGGCGCGACGACCCGAGCATCCAGCTACAGTCTCAACCTACA ACACCCTCCTTGCAATGGGGTCGAGCTGACTCGTCACTATCTTCCTAAGG TCCGTTCCCTTGTTTCCTGTTGCCATTCGATGTCGTCCCCCCATTGACCC CCGCCTTCGCAGGCTACGACGGCGGCGACTGCTGCGAGTGCACTTGCCAG GTACGATCGGCTTCACCCGTTGTACTCTTTCGAGATGTTCACTCTGCTCT CTATGTTTTGTGTGCCCCATCCGCCCTCGACACGGTCTGATTTTCCAATC AAGCGCACCGATTCGTACTTGCATACTGCACGGCGGATGCAAGCCCGATG CATTTCCACGTTTCAAGTACTCATGCCAGAGGGTTCCATGAAGCATGGCC ATCGTTTTCTCTTTCTCTCTACCCTTCCCCCCCGACTCGAAGTGCCCTTG CTGAGAAATGAATCGCCCGTTCAAACTGTGCTGCCCCTACCCATTCCAGA CTCAAGGCGATGACGACTACTACTCTTGGGGATGCAACAAAGGCTACATG GCCTGCATCGACCCGGACGCCTCTTGCGTCGACGATGATGACGTTACCGC TGAAATGGTGGAGAACTGTGAATGGGTTGGCGGTATCGGAGACGGTTACT GCAACGATGGGAACAACAAAGAACAGTGCGGTACGTTGGCCCGGGAAACG AGGACACCCCACGGGACAAAGTATCCAACGAAAAAAAGAGGTTTCGCTCG ATTTCGTGGACATGACCACACCCTCGAAACACTTTTCAACGGTTTGGTTA GGGCTAGAATCAACAAGATCACGCCATCAGAGTAAATCAGCCTTGTGACA ACTTGACCTTTACTTGTGACCTCTCGATACATGCTGCTGTTCTTGGTCTC CATTTCACGTTCCTTCATCCCGCTGTTCGCATGCACCCGCCAGGTGGCCA TGGCGTTGATGGTGTAGAAGCTGATCTCTCCTACGACCGCATTTATTCCG ATGTGTCCTCTCTCGCCGTTCTCTTTCTTTCTCTTCCTCCCTCACCCCCC CCTACCTACCTATCTATCTGTCCGCAATCCATCAGTCAATCTTCTGCATC TCCTTTTGTTATCCCATCCAATCTCAATCTCCCACGAAACTGTCACGGGT GCGATGGCGGCTGTATGCATAGGACATCCCCAAACCAAAACGAGAACTAG ACCCATTAGTTTGCCCATCGTTTCCTCCAAAGCGACGTGAGGGTTGCACG AAATTCGAATATAGAGCAGGCACTATTTAGGCTGTAGCGGGAAAGGATGT GGGCGAAGAACGTCAGCGATTACTAGTGAGTCGGTGGTGAGGGGGAGGGA TGGGTTCGAGTTGAGGTTAGAGGTAGCATGGCGAATGACCCCTTGTACTT GACAATCCCTCTCGCCGTACCTGCCCTGTCCATGCCGCCGTTGTTCTTCC TTTCACGTTGGCCGCCCTTGTATGAAGCAGTCGGTGGGCAGTGGTGGCTC AACACCAGACGTGAAGATGTTAAAAAATCATGCCCTTCCTCTTGCCTCTT GCAAAGTTGGCTAGAATTTGGATAGAATGCAAGCCTGCTCGACCTCATCC CAACGGCAAGGTCAGGTGTGACCATGGTATTCATCGTCTGCCCTCTCCCC CATTCTGTCGTTGTTTGTCCGTGTCTCCCAGGCTACGACGGCGGTGACTG CTGCGAGTGCACATGCGTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig105:616584..618506+

>mRNA_Ecto-sp6_S_contig105.1023.1 ID=mRNA_Ecto-sp6_S_contig105.1023.1|Name=mRNA_Ecto-sp6_S_contig105.1023.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:616584..618506+ (Ectocarpus species6 EcLAC_371)
GTGGCTACGGAGACGGGTACTGCGAGCAGCAAAACAACAACGCAGAATGC
GGCTACGACGGCGGCGACTGCTGCGAGTGCACTTGCCAGACTCAAGGCGA
TGACGACTACTACTCTTGGGGATGCAACAAAGGCTACATGGCCTGCATCG
ACCCGGACGCCTCTTGCGTCGACGATGATGACGTTACCGCTGAAATGGTG
GAGAACTGTGAATGGGTTGGCGGTATCGGAGACGGTTACTGCAACGATGG
GAACAACAAAGAACAGTGCGGCTACGACGGCGGTGACTGCTGCGAGTGCA
CATGCGTGGTAA
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