mRNA_Ecto-sp6_S_contig104.958.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig104.958.1
Unique NamemRNA_Ecto-sp6_S_contig104.958.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: A0A6H5K0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D2_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 6.530e-65
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEYGPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297
            MAFRMTGRVLGAVARERNDVQPALRKVWKA+EPVDGLVIRSISPYQLNLV+NFVTTIPKKLKTRFIEYGPEVMMCVG+VYG YTSHKKGFAQLHKDHRD
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAYEPVDGLVIRSISPYQLNLVRNFVTTIPKKLKTRFIEYGPEVMMCVGIVYGTYTSHKKGFAQLHKDHRD 99
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BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: D7G6P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P4_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.340e-18
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIR 120
            MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLV R
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVSR 40
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BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: A0A6V1P0L7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0L7_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-13
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:    1 MAFRMTGRVLGAVAR--------ERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEYGPEV---MMCVGLVYGIYTSHKKGFAQLHKD 288
            MA R T  V G V R        ERND+QP L+K WK    +DG+V +S+SP++  +VQ ++ TIP K+K + ++  P     ++ V +  G   S KK  +  H+D
Sbjct:    1 MALRRTLAVGGPVRRSFAAMFAAERNDIQPQLKKWWKGTPQMDGVVTQSLSPFEQQIVQPWIKTIPDKIKKKIVDDFPPTIPALIFVAITLGYCESEKKRLSMEHRD 107
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BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: A0A7S1TUQ3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUQ3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.420e-10
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:    4 AFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEY----GPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297
            AFRMT RV+   A  R DV P L K WK   P DG VIR +SPY+ N+V N++ T P+ +  R   Y    GP ++  V   +     + +   QLH  HRD
Sbjct:    6 AFRMTSRVM---AGARPDVNPNLVKWWKKFVPTDGEVIRHLSPYETNVVGNWMKTWPENITKRVTRYAFEGGPALLALVATCWWSEDYYHR--QQLH--HRD 100
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BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: A0A2R5GU00_9STRA (Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU00_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.440e-9
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   37 VARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRF----IEYGPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297
            +A    +V P L K+WK ++P++GLV R++SPYQ + +  +V T P+K+K +      + GP V++  G V     +    F    K HRD
Sbjct:    1 MAPPMKNVHPGLAKLWKKYKPINGLVTRTVSPYQQDFITPWVKTWPEKMKHKISDNLFDVGPGVLVLFGTVAWADAT----FESEMKKHRD 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K0D2_9PHAE6.530e-6595.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P4_ECTSI2.340e-1897.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1P0L7_HETAK1.140e-1336.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TUQ3_9STRA1.420e-1040.20Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2R5GU00_9STRA9.440e-934.07Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:407244..410528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000150.1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348747.7786179-CDS-Ecto-sp6_S_contig104:407243..4073541682348747.7786179-CDS-Ecto-sp6_S_contig104:407243..407354Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 407244..407354 +
1682348747.7877455-CDS-Ecto-sp6_S_contig104:409713..4097821682348747.7877455-CDS-Ecto-sp6_S_contig104:409713..409782Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 409714..409782 +
1682348747.79575-CDS-Ecto-sp6_S_contig104:410408..4105281682348747.79575-CDS-Ecto-sp6_S_contig104:410408..410528Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 410409..410528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.958.1prot_Ecto-sp6_S_contig104.958.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig104 407244..410528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig104.958.1

>prot_Ecto-sp6_S_contig104.958.1 ID=prot_Ecto-sp6_S_contig104.958.1|Name=mRNA_Ecto-sp6_S_contig104.958.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=100bp
MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLV
QNFVTTIPKKLKTRFIEYGPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD*
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mRNA from alignment at Ecto-sp6_S_contig104:407244..410528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig104.958.1 ID=mRNA_Ecto-sp6_S_contig104.958.1|Name=mRNA_Ecto-sp6_S_contig104.958.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3285bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:407244..410528+ (Ectocarpus species6 EcLAC_371)
ATGGCTTTCCGTATGACTGGACGCGTTCTGGGCGCAGTTGCGCGGGAAAG
GAATGACGTGCAGCCGGCGCTGAGGAAGGTTTGGAAGGCACACGAGCCCG
TCGATGGCCTGGTGAGTCGAGAGGATGATGCACATCCATCCCGAAAATAC
TTGCACAAACGAATGTCGCACGTAGAGCGAGCGGCCTCTTCGCAACACGT
CTACAAAACGATGAGCTCGCAGCAACTGTTGCGCGGTGGAGAGGAGCCGA
TGTCGAGACGTCTTTTCACTGCTGTTTCGTTGTAGCGTCTCCCACACCGC
TTCTCTCTAGAGCGGAAGAGCATAGCCTGGGTGTCGGAAGGCCTTTTTTT
GACCCCCATGACCCATGACGTTTCACGGTGTTCTTGCCAACAAAAGTTAT
ATAAAGCCATACTGATTTCAAGGTCTAACAACGCTACAATTTGCTCCAAG
TCGTTCAGCTCAGCAGCACTGATGCGTCGTTGCTGCCCCAAAGCTCCGTC
CAACAGCAGCAATCCCAATTGAAAGGCGGATGCTGGTGCGCCCATAGCCA
CAGCAGTAGATCGGGGGAGTGGCGAAGTATGCCTGGAAGCGTGCATAGAA
GTTGCGCCGCTTTTTCCCTTGCACGCCGTACCTTAATATACGGACTTTCG
ATAGCGTGGGTGATCAAGTGAAAGCGCAACAACCAGATGCCAGTTTAAGA
TTTTGTTGCACACCGACAACACCGAGAGACTATCCCCCAGCGTTCGGCAT
TGTTATACCTTCTCCGTGATGACAAAGCCCGAAGTCTACTTGTGCCTGGT
GTAGCTCCCCCTGTTTTTGCTGGAACAGAGCATCTGTCTGCGATTGCGCG
CGACAAGTACATGCTGCTTTTCACGAGCTCCCTCCTGGTGCGATAGTCTC
GATGCCTCCGCCGGCATTTTCCTCACGCGGAAAGGATTGCTGCTTCCTGT
CTATCTGTCGGCGTTGTTACCATGTACGTGATGACATCGCAACGACGGAT
ACACCAGGAAGCAGCATCCTATCTGCGCCAGGAAAATGCTGGCGGAGGCA
TCGCGACCTTCGCATCAGTAGTTATCTCGTGAAGAGCAGCATATATTACT
GTAGCGCGCAATCGCAGACAGATGCTCTGTTCCAGCAACTCGGGGAGCAT
TACCAGGAACAAAATTCGATGCACCCACGGGGACGTACGTAAGCCTGCAC
CCACACTCGGCAGTCTCGCCTATGCGGAGCACCGTTAGCCAAAAGCACCT
ATCCACGTCAGGAACCAATCTAGCACCTACCCAAGCAGTAACAACCTAGA
CTTATCGTATCAACACTAACCTATTTCGCGCCAATTCCGGCACACCAACC
TAGACGTTGACCACCCAGCGCCAACCTAGCACCTATCGGGTGGGTTTGGG
AATAGGGTTACGGTTTGGGTGGGTTAGAGTTTTTAGAGGGTTTCATACCC
GTGCCAATTCAGAGACTAGTCTTATGTTTAGGAGTACCATAATTGTCTCT
GACTTATCAATTACTTGCCGGTTGAAGGGACAGGATGCAACGCCGTGGTA
CAGCAAGAAAGGTTTTCGAGGCTGGAACGTTTTGTCCTTTTTTTCCTGCA
TGGAATGTTTTCATGTTTTCGGCCTGTGAAGGGTGTGAGTGCATGTCGTA
CATGCGTCCCCATGGGTTTGTGTGTGTTGTTTCGCAAAGCCTAGTCCAGA
TCGTCTGCCTGGAGTTGCTAGAATACCGGAGATGCTGGCAGAATCTGCCG
TATCTACGATTGTGCGTTAGCTGTGTTCCGGCCGCAAGTTTTGTCCTGGA
GCAGGTTGGAGTGGCGCTACTGCCTGCAGTGTGTTTGTGCTTGTCGTCGC
ATTTACTCTCGACGTCGGTCGTCCTTCTTTCGACCTTTCGGTCTGGTCAA
ACAGGAGAAACAGGAGGATGGCTACGCTTTTTTTAACCTTTTCATCGTCG
AGCTGCGGCGCTTGCGTTGGTTGGTATCCCGAGCACGGATTCAGTCGTTC
CTGTCTGATCGGCAGTGAAGCCGGTTGGTAGAACGAATGTATTGCCTTGC
GTTCGTGCAAGCAGCAGTTGTTGAGGCAAGTCCCAATACACGTGTGACTG
CGTTGATATTCCACCCCGTGTCTCAAACGTCAAAAGGCTGCGAGGCTACC
AACGGAGCCAGCCACGGCTGCATGTGACCAAACTTACAAGTATCAGGTTT
CGGGGATATGTATCCTGGCCCGTCTTGACGGAGAATGACAGTGACACTTT
TCCTGCCAACTATTTCATAATCCTGGAAGCTCGAACCTTCAACCTGCCTA
ACTGATGCATGACAGACGCACTCCCATCTCTGCCGCTGCTGGCCGCTGGT
GGGTAAAGGGAGCTCTCTAGTGTCTTCGTGATTGCTGATTGCTGCTCCCG
GCGAAAACGTGCGTGTTACCTCTCGTCGTGGTCGCTGTGTCTCACAATCC
GGCGGTCTGATCGGTACCAGGTCATCCGGTCAATTTCTCCCTACCAGCTC
AACTTGGTGCAGAACTTCGTTACCACCATCCCCAAGAAGGTATGGTATGT
GTTCTAGACGGCGTGGTCTCGTCCGTTGGTGTTTTGGTTGTTTATTTTAC
ATGGTATCGTCGTACACTGGTGTACTGATGCGGAAAGCCTTTGTTCTCGT
CTGTTGGTGTTTTGGTTGTTTATTTGCGTGGTATCGTCGTACACTGGTGT
ACTGATGCGGAAGGCCTGCCGACGTGCTTTAGCAAAAGAGAGGTCCTCGC
TTGGAGGTTTTGTGAGCAATAACCAAGTATCACTCGCTAGGATGCACTTC
CCCCAAGGCCGAGCATGTGGAGTACCTACCGTAGTTTTTAGGAAAGTATA
GCTAACCTCACAGAAAGACCACCCGTTCGAGATAATACCACAGCAGCAGT
CGAAGGGGATGTGTTCAGGTCTTACAGTGAGTGAAGTTTGGCCCTTGTAG
TCGACGCTCACCTGCGCTTTTATGCGGGGTACGCTAGCCACTGCAGCTCC
TAGAGTAGTGCAAGCAGGTTCGGAGCATCGCGTTACCAGGTTGACGTGCA
CGGACCGTCCTCTCTGGCACTCCCCCCTGTCCCGCGTGTTGACCCTGACC
CTCCTCCGCTTTCGGCTGTCCGGCAAACTGCGCGCTTGTCCTTGTGGTGT
GATGTGGTCCACCAGTTGAAGACTCGCTTCATCGAGTACGGCCCGGAGGT
GATGATGTGCGTGGGCCTTGTGTACGGGATTTACACCAGCCACAAGAAGG
GCTTCGCGCAGCTCCACAAGGACCACCGGGACTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:407244..410528+

>mRNA_Ecto-sp6_S_contig104.958.1 ID=mRNA_Ecto-sp6_S_contig104.958.1|Name=mRNA_Ecto-sp6_S_contig104.958.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:407244..410528+ (Ectocarpus species6 EcLAC_371)
ATGGCTTTCCGTATGACTGGACGCGTTCTGGGCGCAGTTGCGCGGGAAAG
GAATGACGTGCAGCCGGCGCTGAGGAAGGTTTGGAAGGCACACGAGCCCG
TCGATGGCCTGGTCATCCGGTCAATTTCTCCCTACCAGCTCAACTTGGTG
CAGAACTTCGTTACCACCATCCCCAAGAAGTTGAAGACTCGCTTCATCGA
GTACGGCCCGGAGGTGATGATGTGCGTGGGCCTTGTGTACGGGATTTACA
CCAGCCACAAGAAGGGCTTCGCGCAGCTCCACAAGGACCACCGGGACTAA
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