mRNA_Ecto-sp6_S_contig104.958.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: A0A6H5K0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D2_9PHAE) HSP 1 Score: 199 bits (507), Expect = 6.530e-65 Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1 Query: 1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEYGPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297 MAFRMTGRVLGAVARERNDVQPALRKVWKA+EPVDGLVIRSISPYQLNLV+NFVTTIPKKLKTRFIEYGPEVMMCVG+VYG YTSHKKGFAQLHKDHRD Sbjct: 1 MAFRMTGRVLGAVARERNDVQPALRKVWKAYEPVDGLVIRSISPYQLNLVRNFVTTIPKKLKTRFIEYGPEVMMCVGIVYGTYTSHKKGFAQLHKDHRD 99
BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: D7G6P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P4_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 2.340e-18 Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 Query: 1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIR 120 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLV R Sbjct: 1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVSR 40
BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: A0A6V1P0L7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0L7_HETAK) HSP 1 Score: 70.5 bits (171), Expect = 1.140e-13 Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 1 Query: 1 MAFRMTGRVLGAVAR--------ERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEYGPEV---MMCVGLVYGIYTSHKKGFAQLHKD 288 MA R T V G V R ERND+QP L+K WK +DG+V +S+SP++ +VQ ++ TIP K+K + ++ P ++ V + G S KK + H+D Sbjct: 1 MALRRTLAVGGPVRRSFAAMFAAERNDIQPQLKKWWKGTPQMDGVVTQSLSPFEQQIVQPWIKTIPDKIKKKIVDDFPPTIPALIFVAITLGYCESEKKRLSMEHRD 107
BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: A0A7S1TUQ3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUQ3_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.420e-10 Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 1 Query: 4 AFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEY----GPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297 AFRMT RV+ A R DV P L K WK P DG VIR +SPY+ N+V N++ T P+ + R Y GP ++ V + + + QLH HRD Sbjct: 6 AFRMTSRVM---AGARPDVNPNLVKWWKKFVPTDGEVIRHLSPYETNVVGNWMKTWPENITKRVTRYAFEGGPALLALVATCWWSEDYYHR--QQLH--HRD 100
BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Match: A0A2R5GU00_9STRA (Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU00_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 9.440e-9 Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 1 Query: 37 VARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRF----IEYGPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297 +A +V P L K+WK ++P++GLV R++SPYQ + + +V T P+K+K + + GP V++ G V + F K HRD Sbjct: 1 MAPPMKNVHPGLAKLWKKYKPINGLVTRTVSPYQQDFITPWVKTWPEKMKHKISDNLFDVGPGVLVLFGTVAWADAT----FESEMKKHRD 87 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig104.958.1 >prot_Ecto-sp6_S_contig104.958.1 ID=prot_Ecto-sp6_S_contig104.958.1|Name=mRNA_Ecto-sp6_S_contig104.958.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=100bp MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVback to top mRNA from alignment at Ecto-sp6_S_contig104:407244..410528+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig104.958.1 ID=mRNA_Ecto-sp6_S_contig104.958.1|Name=mRNA_Ecto-sp6_S_contig104.958.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3285bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:407244..410528+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:407244..410528+ >mRNA_Ecto-sp6_S_contig104.958.1 ID=mRNA_Ecto-sp6_S_contig104.958.1|Name=mRNA_Ecto-sp6_S_contig104.958.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:407244..410528+ (Ectocarpus species6 EcLAC_371)back to top |