mRNA_Ecto-sp6_S_contig104.947.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig104.947.1
Unique NamemRNA_Ecto-sp6_S_contig104.947.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:255737..256374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size283
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_000260.1
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348746.3884628-UTR-Ecto-sp6_S_contig104:255736..2557881682348746.3884628-UTR-Ecto-sp6_S_contig104:255736..255788Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig104 255737..255788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348746.4036355-CDS-Ecto-sp6_S_contig104:255788..2559281682348746.4036355-CDS-Ecto-sp6_S_contig104:255788..255928Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 255789..255928 -
1682348746.4142506-CDS-Ecto-sp6_S_contig104:256283..2563741682348746.4142506-CDS-Ecto-sp6_S_contig104:256283..256374Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 256284..256374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.947.1prot_Ecto-sp6_S_contig104.947.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig104 255789..256374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig104.947.1

>prot_Ecto-sp6_S_contig104.947.1 ID=prot_Ecto-sp6_S_contig104.947.1|Name=mRNA_Ecto-sp6_S_contig104.947.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=77bp
MCSGGVALKEELPDYCEAATCTEAECCDTSDNGDDVETEIIAGVVSSVAA
ALIIGAGAWAWQKCRNKKEGVRQDAQ*
back to top

mRNA from alignment at Ecto-sp6_S_contig104:255737..256374-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig104.947.1 ID=mRNA_Ecto-sp6_S_contig104.947.1|Name=mRNA_Ecto-sp6_S_contig104.947.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=638bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:255737..256374- (Ectocarpus species6 EcLAC_371)
ATGTGCAGTGGAGGTGTAGCTCTGAAGGAAGAGCTACCGGACTACTGCGA
AGCGGCCACCTGCACGGAGGCCGAGTGCTGCGACACAAGTGGTGAGTGAA
TACTTCTGCGATGAATTCAAACTACTACTGCGGTGAGTGAATATTTCTGC
GCAACATCCGCCGACGACCACTTTCTTCCCGGCTCTGACTTCTATTGACG
ATTCCGTATACGTCTTGACCATGCAATGTAAATTCTTAAGGGATAGGGTC
GGCTCGCTCTCGTCATGAGACACCAATTCGTCGCACGTTGTGTGTGTGTC
ATCCCCGTCTACTCTGGACGCCAGTTAGTAGGTCATGCCCTGTCGATGTT
CTATTTTGGCATTTTCCTCCGGTACTCGTACTCTGAGCTCACCCCTTCCA
TGCATCCAACCGCCGCCGTCTGTTCCGTCTTCAAACTCTTCCTCAGATAA
TGGAGATGATGTAGAAACTGAAATTATTGCTGGTGTTGTGTCCAGTGTGG
CGGCCGCTTTGATAATTGGAGCCGGTGCCTGGGCGTGGCAAAAGTGCCGA
AACAAAAAAGAGGGGGTACGGCAAGATGCTCAATAAAGCACCTCCGCCCG
CTCACTGGTTACCTGGCAGTACGTGTGTGAGGTGTAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:255737..256374-

>mRNA_Ecto-sp6_S_contig104.947.1 ID=mRNA_Ecto-sp6_S_contig104.947.1|Name=mRNA_Ecto-sp6_S_contig104.947.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:255737..256374- (Ectocarpus species6 EcLAC_371)
ATGTGCAGTGGAGGTGTAGCTCTGAAGGAAGAGCTACCGGACTACTGCGA
AGCGGCCACCTGCACGGAGGCCGAGTGCTGCGACACAAGTGATAATGGAG
ATGATGTAGAAACTGAAATTATTGCTGGTGTTGTGTCCAGTGTGGCGGCC
GCTTTGATAATTGGAGCCGGTGCCTGGGCGTGGCAAAAGTGCCGAAACAA
AAAAGAGGGGGTACGGCAAGATGCTCAATAA
back to top