mRNA_Ecto-sp6_S_contig104.946.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: D7G6S6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S6_ECTSI) HSP 1 Score: 218 bits (556), Expect = 1.520e-68 Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 1 Query: 1 MSEMAEGVKGQEAQDVGMVESGKGPEPGTEEEAPLQEVRKCLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGYPRVES 351
MSEMA+G +GQEAQDVGM ESGKGPEPGTEEEAP QEVR CLLC N L DPSVKYQANPSKENASGLIIATGSC HVFHLDCIQ CLMNQSLCPVCENKGWEFAAIIHLKGYPRVES
Sbjct: 1 MSEMAKGAEGQEAQDVGMGESGKGPEPGTEEEAPWQEVRTCLLCFNKLRDPSVKYQANPSKENASGLIIATGSCWHVFHLDCIQRCLMNQSLCPVCENKGWEFAAIIHLKGYPRVES 117
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A4D9CQ35_9STRA (RING-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQ35_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.690e-20 Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGY 336
C +C NNL++PS++YQANPS N +GL IA G C HVFHLDCIQ L +S+CP+C NK WEF+ I + GY
Sbjct: 65 CAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLC-NKEWEFSKIERIPGY 135
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: K0TN28_THAOC (RING-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TN28_THAOC) HSP 1 Score: 95.9 bits (237), Expect = 2.340e-20 Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGY 336
C +C N+L++PS++YQANPS+ N +GL IA G+CGHVFHLDCIQ L +S+CP+C NK W+FA I + G+
Sbjct: 91 CAICRNSLNEPSIEYQANPSQTNDNGLSIAFGTCGHVFHLDCIQRWLRTRSVCPLC-NKEWDFAKIERIPGF 161
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: K0TCT4_THAOC (RING-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TCT4_THAOC) HSP 1 Score: 95.9 bits (237), Expect = 9.440e-20 Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGY 336
C +C N+L++PS++YQANPS+ N +GL IA G+CGHVFHLDCIQ L +S+CP+C NK W+FA I + G+
Sbjct: 150 CAICRNSLNEPSIEYQANPSQTNDNGLSIAFGTCGHVFHLDCIQRWLRTRSVCPLC-NKEWDFAKIERIPGF 220
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A087SLR5_AUXPR (E3 ubiquitin-protein ligase RBX1 (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SLR5_AUXPR) HSP 1 Score: 86.7 bits (213), Expect = 2.240e-17 Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKE-NASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAI 318
C +C NNL +PS++YQANPS + + GL IA GSCGHVFHLDCIQ L +S CP+C NK WEF+ I
Sbjct: 47 CAICRNNLYEPSIEYQANPSGDPDHPGLSIAWGSCGHVFHLDCIQRWLKTRSACPLC-NKEWEFSKI 112
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: K0SGL2_THAOC (RING-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGL2_THAOC) HSP 1 Score: 87.8 bits (216), Expect = 2.330e-17 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGY 336
C +C N++++PS++YQANP+ N +GL IA G+CGHVFHLDCIQ L +S+CP+C + W+FA + GY
Sbjct: 90 CAICRNSITEPSIEYQANPAPSNNNGLSIAFGTCGHVFHLDCIQRWLKTRSVCPLCGAE-WDFAKNERIPGY 160
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A830HL03_9CHLO (RING-box protein 1 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HL03_9CHLO) HSP 1 Score: 85.5 bits (210), Expect = 5.860e-17 Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKENAS-GLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAI 318
C +C NNL +PS++YQANP+ +N GL IA G CGHVFHLDCIQ L +S+CP+C +K WEFA I
Sbjct: 47 CAICRNNLYEPSIEYQANPTYDNDHPGLSIAWGCCGHVFHLDCIQRWLKTRSVCPLC-SKEWEFAKI 112
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A5J4XZ32_9CHLO (RING-box 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XZ32_9CHLO) HSP 1 Score: 85.5 bits (210), Expect = 6.520e-17 Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKE-NASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAI 318
C +C NNL +PS++YQANP+ + + GL IA G+CGHVFHLDCIQ L +S CP+C NK WEFA I
Sbjct: 50 CAICRNNLYEPSIEYQANPTGDADHPGLSIAWGNCGHVFHLDCIQRWLKTRSACPLC-NKEWEFAKI 115
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A250X7T1_9CHLO (RING-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X7T1_9CHLO) HSP 1 Score: 85.5 bits (210), Expect = 7.440e-17 Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKE-NASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAI 318
C +C NNL +PS++YQANP+ + + GL IA G+CGHVFHLDCIQ L +S CP+C NK WEFA I
Sbjct: 54 CAICRNNLYEPSIEYQANPTGDPDHPGLSIAWGNCGHVFHLDCIQRWLKTRSACPLC-NKEWEFAKI 119
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A2P6VGN8_9CHLO (RING-box 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGN8_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 1.160e-16 Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1 Query: 121 CLLCCNNLSDPSVKYQANPSKE-NASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKG 333
C +C NNL +PS++YQANP+ + + GL IA G+CGHVFHLDCIQ L +S CP+C N+ WEF+ I + G
Sbjct: 49 CAICRNNLYEPSIEYQANPTGDADHPGLSIAWGTCGHVFHLDCIQRWLKTRSACPLC-NREWEFSKIERIVG 119 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig104.946.1 >prot_Ecto-sp6_S_contig104.946.1 ID=prot_Ecto-sp6_S_contig104.946.1|Name=mRNA_Ecto-sp6_S_contig104.946.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp MSEMAEGVKGQEAQDVGMVESGKGPEPGTEEEAPLQEVRKCLLCCNNLSDback to top mRNA from alignment at Ecto-sp6_S_contig104:247278..249452- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig104.946.1 ID=mRNA_Ecto-sp6_S_contig104.946.1|Name=mRNA_Ecto-sp6_S_contig104.946.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2175bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:247278..249452- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:247278..249452- >mRNA_Ecto-sp6_S_contig104.946.1 ID=mRNA_Ecto-sp6_S_contig104.946.1|Name=mRNA_Ecto-sp6_S_contig104.946.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:247278..249452- (Ectocarpus species6 EcLAC_371)back to top |