mRNA_Ecto-sp6_S_contig104.945.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: A0A6H5J608_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J608_9PHAE) HSP 1 Score: 575 bits (1481), Expect = 5.640e-204 Identity = 308/396 (77.78%), Postives = 325/396 (82.07%), Query Frame = 1 Query: 1 MKRRADAATAAAARWSSAKASVTAVAVRCLSVYQPPPXXXPAAACSANP----CLALALAVFSPGTRRLPLVCIGAPT-----------TPSFVCSGSDLSPSPEWKDTTSFFASRGCTVGTMALTGRGNSPTDTLTLRALQAGVAAAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPSPGALANEHLLRARAGDPGEPNDHVAGVSASLGAHELAQLMKDDPAHWEGLLRRYFFEFHQHSPWHNAPLPCPRHNLERGVIKEDNRHFSCPSPDPRFPVKAFAQMCLSEMSSTLRLESHVVDTLVLGSGMATSATSTSRAGGSGCADGVAALDDARSDALSAICEFHGTDGWREVDHRGVVTDPFGMPDNASPWQEVVWEWYDARF 1143
M RRADAA AAAA+WSSAKA+VTAVAVRCLS P P PA SA C + S G+ P + P TP + +G P+ WKDTTSFFASRGCTVGTMALTGRG+SPTDTLTLRALQAGVAAAV+KSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPP+PGALANEHLLRARAGDPGEPND VAG ASLGA ELAQLMKDDPAHWEGLLRRYF EFHQHSPWHNAPL CPR++LERGVIKE+NRH C SPDPRFPVKAFAQMCLSE SSTLRLESH V+TLVLGSGMATSATSTS+ GGSGCADG AALDDARSDALSAICEFHGTDGWREVDHRGVVTD GMP+NA PWQEVVWEWYDARF
Sbjct: 1 MLRRADAAAAAAAQWSSAKATVTAVAVRCLSQRIPYPQGFPALPSSARGDGRRCSS------SSGSSSTPAIDFAVPPAVLDDGYFEKPTPLLLVAGEG-RPAAWWKDTTSFFASRGCTVGTMALTGRGSSPTDTLTLRALQAGVAAAVDKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPAPGALANEHLLRARAGDPGEPNDPVAGAPASLGAQELAQLMKDDPAHWEGLLRRYFSEFHQHSPWHNAPLSCPRYDLERGVIKEENRHSPCSSPDPRFPVKAFAQMCLSETSSTLRLESHAVETLVLGSGMATSATSTSKTGGSGCADGGAALDDARSDALSAICEFHGTDGWREVDHRGVVTDGNGMPENAPPWQEVVWEWYDARF 389
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: D7G6S5_ECTSI (Hydrolase, alpha/beta fold family protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S5_ECTSI) HSP 1 Score: 261 bits (667), Expect = 2.930e-83 Identity = 134/153 (87.58%), Postives = 142/153 (92.81%), Query Frame = 1 Query: 223 TPSFVCSGSDLSPSPEWKDTTSFFASRGCTVGTMALTGRGNSPTDTLTLRALQAGVAAAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPSPGALANEHLLRARAGDPGEPNDHVAGVSASLGAHELAQLMKDDPAHWEGLLR 681
TP + +G P+ WKDTTSFFASRGCTVGTMALTGRG+SPTDTLTLRALQAGVAAAV++SGLTPPVI+AHSMAGFVCQQYLQSYSASGLVLL+SFPPSPGALANEHLLRARAGDPGEPNDHVAG SASLGA ELAQLMKDDPAHWEGLLR
Sbjct: 15 TPLLLVAGEG-QPAAWWKDTTSFFASRGCTVGTMALTGRGSSPTDTLTLRALQAGVAAAVDQSGLTPPVIMAHSMAGFVCQQYLQSYSASGLVLLESFPPSPGALANEHLLRARAGDPGEPNDHVAGPSASLGAQELAQLMKDDPAHWEGLLR 166
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: A0A0Q2QE95_MYCGO (AB hydrolase-1 domain-containing protein n=1 Tax=Mycobacterium gordonae TaxID=1778 RepID=A0A0Q2QE95_MYCGO) HSP 1 Score: 58.2 bits (139), Expect = 5.600e-6 Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 289 FFASRGCTVGTMALTGRGNSPTDTLTLRALQAGVA--AAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPS-----PGALANEHLLR 558
FFAS G V +L G G SP TL ++ VA A+V +S TPPV++ HSM GFV Q YL ++A+G +LL S PS G +A H +R
Sbjct: 38 FFASHGYRVVAPSLRGHGASP-GTLRWARIRDYVADVASVAQSLPTPPVVIGHSMGGFVVQHYLTRHTAAGAILLASIRPSGVLRVTGRIARRHPVR 133
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: A0A0J6VVA3_9MYCO (Non-heme chloroperoxidase n=4 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A0J6VVA3_9MYCO) HSP 1 Score: 56.6 bits (135), Expect = 1.830e-5 Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 286 SFFASRGCTVGTMALTGRGNSPTDT----LTLRALQAGVAAAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPP 522
S+FA RG ++L G G S TD T +A VAA V + TPPV+V HSM GFV Q+YL+S+ A VL+ S PP
Sbjct: 37 SWFADRGYRALALSLRGHGGSSTDKPLNDCTFDDYEADVAA-VAATLATPPVLVGHSMGGFVVQKYLESHEAPAAVLMASMPP 118
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: UPI001F61926E (alpha/beta fold hydrolase n=1 Tax=Mycobacterium kubicae TaxID=120959 RepID=UPI001F61926E) HSP 1 Score: 54.3 bits (129), Expect = 1.910e-5 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 289 FFASRGCTVGTMALTGRGNSPTD-TLTLRALQAGVA--AAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPS 525
FFA+RG V +L G G+S D L LR++ VA A + S + P++V HSM GF+ Q+YL+ YSA VLL S PP+
Sbjct: 18 FFATRGFHVVAPSLRGHGSSQRDGPLRLRSIADFVADVAQIANSLASEPILVGHSMGGFIVQKYLERYSAPAGVLLASAPPT 99
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: UPI00132F66D8 (alpha/beta fold hydrolase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00132F66D8) HSP 1 Score: 53.1 bits (126), Expect = 2.870e-5 Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 1 Query: 289 FFASRGCTVGTMALTGRGNSPTDTLTLRALQAGV----AAAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSA 489
FFA +G V +L G GNSPTD T RAL A V TPPV++ HSM GF+ Q+YL+S+SA
Sbjct: 42 FFADKGYRVVAPSLRGHGNSPTDK-TFRALSIADYVDDVATVAADLPTPPVVIGHSMGGFIVQKYLESHSA 111
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: A0A2S8KR19_MYCAO (Alpha/beta hydrolase n=2 Tax=Mycolicibacterium austroafricanum TaxID=39687 RepID=A0A2S8KR19_MYCAO) HSP 1 Score: 55.5 bits (132), Expect = 4.430e-5 Identity = 50/143 (34.97%), Postives = 67/143 (46.85%), Query Frame = 1 Query: 289 FFASRGCTVGTMALTGRGNSPTDTLTLRALQAGV----AAAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPSPGALANEHLLRARAGDPGEPNDHVAGVSAS------LGAHELAQLMKDDPAHWEGLLRRY 687
FFASRG ++L G G+S T LRAL AV + TPP++V HSM GF+ Q+YL+ +SA VL+ S PP+ + LR H A VS + + LA+ P E L+RRY
Sbjct: 38 FFASRGYRAVALSLQGHGHSGTSK-PLRALSFDDYLQDITAVADTLATPPIVVGHSMGGFLVQKYLEHHSAPAAVLMASMPPTGYLASGLRWLRRHPW-------HFAKVSITGRSLPYVSTPPLARERFFSPQTPEALVRRY 172
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: W0SL50_9PROT (Alpha/beta hydrolase n=4 Tax=Betaproteobacteria TaxID=28216 RepID=W0SL50_9PROT) HSP 1 Score: 55.1 bits (131), Expect = 5.600e-5 Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 1 Query: 289 FFASRGCTVGTMALTGRGNSP----TDTLTLRALQAGVAAAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPSPGALANEHLLRARAGDPGEPNDHVAGVSASLGAHELAQLMKDDPAHWEGLLRRY 687
FFA G ++L+G G SP D+ ++ VAA V + PPV++ HSM GFV Q+YL+ + A G VL+ + PP A ++ ++ G + N ++G ASL L + + P + L R Y
Sbjct: 31 FFAEAGYAAYAVSLSGHGGSPGRKHLDSFSIGDYVRDVAA-VAAALPAPPVLIGHSMGGFVVQKYLEEHIAPGAVLMCAVPPQGLLSAAMGMMFSKPGMMKDLNSLMSGGKASL--ETLREALFAQPVSLDDLKRYY 164
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: A0A2N2UU17_9PROT (Alpha/beta hydrolase n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-11 TaxID=2013702 RepID=A0A2N2UU17_9PROT) HSP 1 Score: 55.1 bits (131), Expect = 6.380e-5 Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 1 Query: 289 FFASRGCTVGTMALTGRGNSP----TDTLTLRALQAGVAAAVEKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPSPGALANEHLLRARAGDPGEPNDHVAGVSASLGA 624
FFA G ++L+G G SP D+L++ A VA AV PPV++ HSM GFV Q+YL+ ++A VL+ S PP A L+ +R G + N + G +L A
Sbjct: 47 FFAEAGYAAHALSLSGHGASPGRERLDSLSIDDYVADVATAVAALP-APPVLIGHSMGGFVVQKYLERHTAPAAVLMCSVPPQGLLSAAIGLMFSRPGLMKDLNAMLGGGHVALDA 161
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Match: A0A522Y103_9RHOO (Alpha/beta fold hydrolase n=2 Tax=Rugosibacter TaxID=1914449 RepID=A0A522Y103_9RHOO) HSP 1 Score: 55.1 bits (131), Expect = 6.950e-5 Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1 Query: 289 FFASRGCTVGTMALTGRGNSP----TDTLTLRALQAGVAAAVEKSGL-TPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPSPGALANEHLLRARAG 570
FFA G ++L+G G SP DTL++ VA AV +GL PPV++ HSM GFV Q+YL+ ++A VL+ S PP A LL +R G
Sbjct: 45 FFAEAGYIAHALSLSGHGASPGHDRLDTLSIDDYVNDVAIAV--AGLPAPPVLIGHSMGGFVVQKYLEKHTAPAAVLMCSVPPQGLLSAAVGLLFSRPG 141 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig104.945.1 >prot_Ecto-sp6_S_contig104.945.1 ID=prot_Ecto-sp6_S_contig104.945.1|Name=mRNA_Ecto-sp6_S_contig104.945.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=382bp MKRRADAATAAAARWSSAKASVTAVAVRCLSVYQPPPPAAPAAACSANPCback to top mRNA from alignment at Ecto-sp6_S_contig104:238363..242133+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig104.945.1 ID=mRNA_Ecto-sp6_S_contig104.945.1|Name=mRNA_Ecto-sp6_S_contig104.945.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3771bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:238363..242133+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:238363..242133+ >mRNA_Ecto-sp6_S_contig104.945.1 ID=mRNA_Ecto-sp6_S_contig104.945.1|Name=mRNA_Ecto-sp6_S_contig104.945.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:238363..242133+ (Ectocarpus species6 EcLAC_371)back to top |