mRNA_Ecto-sp6_S_contig104.943.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig104.943.1
Unique NamemRNA_Ecto-sp6_S_contig104.943.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:223997..227359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size884
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000300.1
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348746.0431807-UTR-Ecto-sp6_S_contig104:223996..2241511682348746.0431807-UTR-Ecto-sp6_S_contig104:223996..224151Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig104 223997..224151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348746.0549016-CDS-Ecto-sp6_S_contig104:224151..2241791682348746.0549016-CDS-Ecto-sp6_S_contig104:224151..224179Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 224152..224179 +
1682348746.0677469-CDS-Ecto-sp6_S_contig104:225301..2256341682348746.0677469-CDS-Ecto-sp6_S_contig104:225301..225634Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 225302..225634 +
1682348746.0852325-CDS-Ecto-sp6_S_contig104:225918..2262331682348746.0852325-CDS-Ecto-sp6_S_contig104:225918..226233Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 225919..226233 +
1682348746.095801-CDS-Ecto-sp6_S_contig104:227306..2273591682348746.095801-CDS-Ecto-sp6_S_contig104:227306..227359Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 227307..227359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.943.1prot_Ecto-sp6_S_contig104.943.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig104 224152..227359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig104.943.1

>prot_Ecto-sp6_S_contig104.943.1 ID=prot_Ecto-sp6_S_contig104.943.1|Name=mRNA_Ecto-sp6_S_contig104.943.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp
MNANNTGPFGAHASTDGVSGGGPSPPPSVAQAFLTGLRSRMAECSHDLQQ
MLQDATQNGLVSTEDPSMQHFIDAVEHLNAAQHIATSLATPLAIAEQHVQ
TFKAALQIAQQNAMDGAAQPAINRSQDTPAQQLTALLKKNKNDALQAEAE
IILARFWNQGIAHHYRKRAELLESAYFGNGDERAVVVLLRHDKEMAESAF
ADASTVDSSTQLSGAAHVHRDAMIRCGGILIWYGKLVDGTQE*
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mRNA from alignment at Ecto-sp6_S_contig104:223997..227359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig104.943.1 ID=mRNA_Ecto-sp6_S_contig104.943.1|Name=mRNA_Ecto-sp6_S_contig104.943.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3363bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:223997..227359+ (Ectocarpus species6 EcLAC_371)
GCATGCATATTTTCTCTTCCCCCCTCTTTCTCCTCCAGGGCGTTTCCACG
AAGTAGCAGCCCTCGGGTCCGATCGACTCACGCACGAACAGCGTTACAAC
CAAGTCCGAGGGCTGCAAAGCACGCCTGGAGCTTGGAGGCTTGGAGGAGG
GGGTCATGAACGCGAACAACACAGGCCCATTCGGTGAGAACGAAGAGGTT
ATTTGCTGAAGCTGGTGCCTGCCGATGCCTCCAGGGAACCGAATTGCGCC
CGCTCTTACGCCCCCCTCCCCCAGCATAGAGGACAACCTGCAGACGGTAT
CCCACTTAGTACATATTTACATCCCGACGCAAATTGCCAAAATGCCTGTC
TCTAGTTGTTGGGCACCAACGCTTTGGCACTTTGGTTTGGAGCAGGTTGC
TTCAACATGCCCATGAAGCAACCGTGCACGAAGAAGACACAAAATATACT
CCTGAACAGCTCTTCAACCCCATAGACCGACACCGACTTCCTGCGTGAGC
AGCAAGAGTGGAGATCGGTGCACATGCCGGATATCAACAGATTTCCCCTC
CCTCCGTCAGGGTACAATGTTCCGCCGTTCCGCTTTTAGGCGACACACAA
CAGTTGGAGCTGTTTCGATAGCGAAAACGAGCCTGTTGCACCTACGGGGG
AGATCGCGCTGTGTGCTACTCGGGGAACCGTAGGAATACGAGTTAGCCAT
TGTGCAACACTAGGAATTCGTTGCCAATCTTCACGATCCTTTATTATCTG
CTGTGGAGGAGACGAAGTGTTTTCAAAAAATAATAACGAACAGGTCGAGA
ATCCAGCAGGGACTTGCGACGGAAGTCCTGCTGTAAAGTCCAGGCGTTGA
AGGGAACCCAGAGCAGCCCGTGCCTGGTACGCACAGAAAGAGCGGCTTAC
CCGAACTCTCTACATGTTCGGATAGTTGTTCGTTGTCATCAAAAATAGCT
CCGTATTCGCTTGACAGCAGTGAGGCGCCAAAACCTCGCCTCGAGTCTCG
CTAATTATATGCCCCAAAACCTCGTGCACGTCACTACGAATTGATTATTA
GCCCTTGTTTTTGTCGCTAGCACCCAAGTGCACATCCGACAACCTCCCCC
GTTGATAATCTAACTTGCTTGCCCACCCAATAAGCCACCCTGCTTGCCCA
ATAGTTTTGACTAGATTGTATTTTTCTCTGCTCCCGTGCCACCTAAACCG
TACAGAGCACCCGAAACCCGTACGAAGAGCGACGGGGTAAACTTTTACTT
TTCCCCAAAATATCGTTTCCTTTCCCTTCACCCGGTGCGCCTTTGTGAAA
CACAGGAGCCCATGCCTCTACGGACGGCGTCAGCGGGGGTGGACCCTCAC
CCCCACCATCCGTTGCGCAAGCCTTCTTGACGGGGCTACGCAGCCGTATG
GCGGAGTGCAGCCACGACTTGCAGCAGATGCTGCAGGACGCTACTCAGAA
TGGACTGGTCTCAACAGAGGACCCGTCCATGCAGCACTTCATTGACGCGG
TGGAACACCTGAACGCGGCGCAGCACATAGCCACGAGCTTAGCCACACCT
TTGGCTATTGCCGAACAACACGTCCAAACGTTCAAGGCGGCGCTGCAGAT
TGCCCAACAGAACGCCATGGACGGCGCGGCTCAGCCCGGTAAGTAGCGTG
TGTTTTTATGAAAAGTCATGGTAGAGAAAATGCCTAACATGCGCTACATT
TTAGTCGCGAACCAGAGAATGGCTCATGTTGTATGCTTGTATATGAGAAG
GGTGCTTGTGGGGGTAGCAGCAGGGTATGTTTGGCGATCTCAATCGACGT
GTTGCCTCTGGTAACATGTTGGGTTTGCATGCTCTGTATGAACAGCAAGG
AAACTCAAGCGTTTTTCTTCTACTCACACCCCAGTTTGGTGCTTTGTCAT
GCATACGTGCATGCGATACCAGCGATCAACCGTTCACAGGACACTCCGGC
CCAGCAGCTGACTGCTCTCCTTAAAAAAAACAAGAACGACGCCCTGCAGG
CCGAAGCGGAAATTATCCTCGCCCGCTTCTGGAACCAAGGTATCGCACAC
CACTACCGCAAGAGGGCCGAGCTGTTGGAGAGCGCCTACTTCGGAAACGG
CGACGAACGCGCTGTTGTCGTCCTCTTGCGGCACGACAAGGAGATGGCGG
AAAGCGCGTTCGCCGATGCGAGCACCGTGGACTCTTCAACCCAGCTTTCC
GGGGCCGCCCATGTCCACCGCGACGCCATGATAAGGTGTGCATATACACA
ATCGTTTCTGTCTTTAATCCGGAGAATTGGTTCCGTTTTTTGTAACGCCA
GACCGTTGACTCATCGCTGGACATTGCGTTTGGTTATCTAGGGATAGTCG
GAACCTGTGTAGGCACGTCTAGGTGCCACCAAGCAACGTGCACGGCCACA
GCGGTAAGCTGTGCGCCTTGCACTACCGCTAATGCTCTCCATTTGCCATT
ATTGGTGGCTATGTACGTAGTCTAGCAGTGATGCTCCTTTCGTAGAGGGC
GTTGACGTTCGCGCACTGACTTAGTTGTGGCCGTTTTTTCTTGCCTACCC
ACCGGGACCGCCTGCCAGGATCTACAATCTCCTTACCAGCATCGAGGAAA
TTCCGGGCCTGAACATCTAAATAGGCACCGATCTGATCAACCAAGAAGAA
CAACCGGTCCATTGCGGGCTGCTTGTTTCGAACGGATCGTCTCGCCAGAA
GCGAACCGATACGAGGCATTTTGAGGTGTTATGTCAAACTCTTCGGTTGT
AATTGCCCTTCCTGAACCGCTACGTAGCGTATCGCTTCATGAAGGGCACT
GACACCCAGATGGTTTAGATCATTCTCTCTATGTTGCCAGTAAAGGTTTC
GGAGCACAGATGTACGAGATCAAGGATCGTTCTTTGGTCTCTACCTCGAT
TAAGGGGAGTAATTGTTTggggggggGGGGGGGCGTCGGTACCACCACCA
GAGGGGGACCCGGCCTGCCCGGGTACCATTTTTGTTAACGGAAAACGATT
GGTGGTATCTCCGTGCCCCCTACAGGATTGTGCAGCAGCGTATGAGAATC
CCGCCGCTTCACCCCCCGGCCAAACGCAAGTCAGAGGTCGTGGTTGCAGG
TTTGGGGATAGCGGACACACGCGTGAGGCATTACCGTGCTGTTTAGGGAG
CCGCAACTGCTTTCGCGATGGCGAATTTTCCCTCGCCTTGCAACGGGCAG
ATGCTGTTTCGACTCCTGCTGTTCAGCAGCTTCCTAAACAGCGCGGTAGT
GTGTCCCCTATCCCCAAACCTGCAACCACGACCTCTGACTCGGGTTCGGC
CGGGGGGAAGGCGGCGGGATTCTCATTTGGTATGGAAAACTTGTGGATGG
AACACAAGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:223997..227359+

>mRNA_Ecto-sp6_S_contig104.943.1 ID=mRNA_Ecto-sp6_S_contig104.943.1|Name=mRNA_Ecto-sp6_S_contig104.943.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:223997..227359+ (Ectocarpus species6 EcLAC_371)
ATGAACGCGAACAACACAGGCCCATTCGGAGCCCATGCCTCTACGGACGG
CGTCAGCGGGGGTGGACCCTCACCCCCACCATCCGTTGCGCAAGCCTTCT
TGACGGGGCTACGCAGCCGTATGGCGGAGTGCAGCCACGACTTGCAGCAG
ATGCTGCAGGACGCTACTCAGAATGGACTGGTCTCAACAGAGGACCCGTC
CATGCAGCACTTCATTGACGCGGTGGAACACCTGAACGCGGCGCAGCACA
TAGCCACGAGCTTAGCCACACCTTTGGCTATTGCCGAACAACACGTCCAA
ACGTTCAAGGCGGCGCTGCAGATTGCCCAACAGAACGCCATGGACGGCGC
GGCTCAGCCCGCGATCAACCGTTCACAGGACACTCCGGCCCAGCAGCTGA
CTGCTCTCCTTAAAAAAAACAAGAACGACGCCCTGCAGGCCGAAGCGGAA
ATTATCCTCGCCCGCTTCTGGAACCAAGGTATCGCACACCACTACCGCAA
GAGGGCCGAGCTGTTGGAGAGCGCCTACTTCGGAAACGGCGACGAACGCG
CTGTTGTCGTCCTCTTGCGGCACGACAAGGAGATGGCGGAAAGCGCGTTC
GCCGATGCGAGCACCGTGGACTCTTCAACCCAGCTTTCCGGGGCCGCCCA
TGTCCACCGCGACGCCATGATAAGGTGCGGCGGGATTCTCATTTGGTATG
GAAAACTTGTGGATGGAACACAAGAGTGA
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