Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 884 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-26_000300.1 |
| Cds size | 729 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348746.0431807-UTR-Ecto-sp6_S_contig104:223996..224151 | 1682348746.0431807-UTR-Ecto-sp6_S_contig104:223996..224151 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig104 223997..224151 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348746.0549016-CDS-Ecto-sp6_S_contig104:224151..224179 | 1682348746.0549016-CDS-Ecto-sp6_S_contig104:224151..224179 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig104 224152..224179 + |
| 1682348746.0677469-CDS-Ecto-sp6_S_contig104:225301..225634 | 1682348746.0677469-CDS-Ecto-sp6_S_contig104:225301..225634 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig104 225302..225634 + |
| 1682348746.0852325-CDS-Ecto-sp6_S_contig104:225918..226233 | 1682348746.0852325-CDS-Ecto-sp6_S_contig104:225918..226233 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig104 225919..226233 + |
| 1682348746.095801-CDS-Ecto-sp6_S_contig104:227306..227359 | 1682348746.095801-CDS-Ecto-sp6_S_contig104:227306..227359 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig104 227307..227359 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig104.943.1 >prot_Ecto-sp6_S_contig104.943.1 ID=prot_Ecto-sp6_S_contig104.943.1|Name=mRNA_Ecto-sp6_S_contig104.943.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp
MNANNTGPFGAHASTDGVSGGGPSPPPSVAQAFLTGLRSRMAECSHDLQQ
MLQDATQNGLVSTEDPSMQHFIDAVEHLNAAQHIATSLATPLAIAEQHVQ
TFKAALQIAQQNAMDGAAQPAINRSQDTPAQQLTALLKKNKNDALQAEAE
IILARFWNQGIAHHYRKRAELLESAYFGNGDERAVVVLLRHDKEMAESAF
ADASTVDSSTQLSGAAHVHRDAMIRCGGILIWYGKLVDGTQE* back to topmRNA from alignment at Ecto-sp6_S_contig104:223997..227359+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig104.943.1 ID=mRNA_Ecto-sp6_S_contig104.943.1|Name=mRNA_Ecto-sp6_S_contig104.943.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3363bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:223997..227359+ (Ectocarpus species6 EcLAC_371)
GCATGCATATTTTCTCTTCCCCCCTCTTTCTCCTCCAGGGCGTTTCCACG
AAGTAGCAGCCCTCGGGTCCGATCGACTCACGCACGAACAGCGTTACAAC
CAAGTCCGAGGGCTGCAAAGCACGCCTGGAGCTTGGAGGCTTGGAGGAGG
GGGTCATGAACGCGAACAACACAGGCCCATTCGGTGAGAACGAAGAGGTT
ATTTGCTGAAGCTGGTGCCTGCCGATGCCTCCAGGGAACCGAATTGCGCC
CGCTCTTACGCCCCCCTCCCCCAGCATAGAGGACAACCTGCAGACGGTAT
CCCACTTAGTACATATTTACATCCCGACGCAAATTGCCAAAATGCCTGTC
TCTAGTTGTTGGGCACCAACGCTTTGGCACTTTGGTTTGGAGCAGGTTGC
TTCAACATGCCCATGAAGCAACCGTGCACGAAGAAGACACAAAATATACT
CCTGAACAGCTCTTCAACCCCATAGACCGACACCGACTTCCTGCGTGAGC
AGCAAGAGTGGAGATCGGTGCACATGCCGGATATCAACAGATTTCCCCTC
CCTCCGTCAGGGTACAATGTTCCGCCGTTCCGCTTTTAGGCGACACACAA
CAGTTGGAGCTGTTTCGATAGCGAAAACGAGCCTGTTGCACCTACGGGGG
AGATCGCGCTGTGTGCTACTCGGGGAACCGTAGGAATACGAGTTAGCCAT
TGTGCAACACTAGGAATTCGTTGCCAATCTTCACGATCCTTTATTATCTG
CTGTGGAGGAGACGAAGTGTTTTCAAAAAATAATAACGAACAGGTCGAGA
ATCCAGCAGGGACTTGCGACGGAAGTCCTGCTGTAAAGTCCAGGCGTTGA
AGGGAACCCAGAGCAGCCCGTGCCTGGTACGCACAGAAAGAGCGGCTTAC
CCGAACTCTCTACATGTTCGGATAGTTGTTCGTTGTCATCAAAAATAGCT
CCGTATTCGCTTGACAGCAGTGAGGCGCCAAAACCTCGCCTCGAGTCTCG
CTAATTATATGCCCCAAAACCTCGTGCACGTCACTACGAATTGATTATTA
GCCCTTGTTTTTGTCGCTAGCACCCAAGTGCACATCCGACAACCTCCCCC
GTTGATAATCTAACTTGCTTGCCCACCCAATAAGCCACCCTGCTTGCCCA
ATAGTTTTGACTAGATTGTATTTTTCTCTGCTCCCGTGCCACCTAAACCG
TACAGAGCACCCGAAACCCGTACGAAGAGCGACGGGGTAAACTTTTACTT
TTCCCCAAAATATCGTTTCCTTTCCCTTCACCCGGTGCGCCTTTGTGAAA
CACAGGAGCCCATGCCTCTACGGACGGCGTCAGCGGGGGTGGACCCTCAC
CCCCACCATCCGTTGCGCAAGCCTTCTTGACGGGGCTACGCAGCCGTATG
GCGGAGTGCAGCCACGACTTGCAGCAGATGCTGCAGGACGCTACTCAGAA
TGGACTGGTCTCAACAGAGGACCCGTCCATGCAGCACTTCATTGACGCGG
TGGAACACCTGAACGCGGCGCAGCACATAGCCACGAGCTTAGCCACACCT
TTGGCTATTGCCGAACAACACGTCCAAACGTTCAAGGCGGCGCTGCAGAT
TGCCCAACAGAACGCCATGGACGGCGCGGCTCAGCCCGGTAAGTAGCGTG
TGTTTTTATGAAAAGTCATGGTAGAGAAAATGCCTAACATGCGCTACATT
TTAGTCGCGAACCAGAGAATGGCTCATGTTGTATGCTTGTATATGAGAAG
GGTGCTTGTGGGGGTAGCAGCAGGGTATGTTTGGCGATCTCAATCGACGT
GTTGCCTCTGGTAACATGTTGGGTTTGCATGCTCTGTATGAACAGCAAGG
AAACTCAAGCGTTTTTCTTCTACTCACACCCCAGTTTGGTGCTTTGTCAT
GCATACGTGCATGCGATACCAGCGATCAACCGTTCACAGGACACTCCGGC
CCAGCAGCTGACTGCTCTCCTTAAAAAAAACAAGAACGACGCCCTGCAGG
CCGAAGCGGAAATTATCCTCGCCCGCTTCTGGAACCAAGGTATCGCACAC
CACTACCGCAAGAGGGCCGAGCTGTTGGAGAGCGCCTACTTCGGAAACGG
CGACGAACGCGCTGTTGTCGTCCTCTTGCGGCACGACAAGGAGATGGCGG
AAAGCGCGTTCGCCGATGCGAGCACCGTGGACTCTTCAACCCAGCTTTCC
GGGGCCGCCCATGTCCACCGCGACGCCATGATAAGGTGTGCATATACACA
ATCGTTTCTGTCTTTAATCCGGAGAATTGGTTCCGTTTTTTGTAACGCCA
GACCGTTGACTCATCGCTGGACATTGCGTTTGGTTATCTAGGGATAGTCG
GAACCTGTGTAGGCACGTCTAGGTGCCACCAAGCAACGTGCACGGCCACA
GCGGTAAGCTGTGCGCCTTGCACTACCGCTAATGCTCTCCATTTGCCATT
ATTGGTGGCTATGTACGTAGTCTAGCAGTGATGCTCCTTTCGTAGAGGGC
GTTGACGTTCGCGCACTGACTTAGTTGTGGCCGTTTTTTCTTGCCTACCC
ACCGGGACCGCCTGCCAGGATCTACAATCTCCTTACCAGCATCGAGGAAA
TTCCGGGCCTGAACATCTAAATAGGCACCGATCTGATCAACCAAGAAGAA
CAACCGGTCCATTGCGGGCTGCTTGTTTCGAACGGATCGTCTCGCCAGAA
GCGAACCGATACGAGGCATTTTGAGGTGTTATGTCAAACTCTTCGGTTGT
AATTGCCCTTCCTGAACCGCTACGTAGCGTATCGCTTCATGAAGGGCACT
GACACCCAGATGGTTTAGATCATTCTCTCTATGTTGCCAGTAAAGGTTTC
GGAGCACAGATGTACGAGATCAAGGATCGTTCTTTGGTCTCTACCTCGAT
TAAGGGGAGTAATTGTTTggggggggGGGGGGGCGTCGGTACCACCACCA
GAGGGGGACCCGGCCTGCCCGGGTACCATTTTTGTTAACGGAAAACGATT
GGTGGTATCTCCGTGCCCCCTACAGGATTGTGCAGCAGCGTATGAGAATC
CCGCCGCTTCACCCCCCGGCCAAACGCAAGTCAGAGGTCGTGGTTGCAGG
TTTGGGGATAGCGGACACACGCGTGAGGCATTACCGTGCTGTTTAGGGAG
CCGCAACTGCTTTCGCGATGGCGAATTTTCCCTCGCCTTGCAACGGGCAG
ATGCTGTTTCGACTCCTGCTGTTCAGCAGCTTCCTAAACAGCGCGGTAGT
GTGTCCCCTATCCCCAAACCTGCAACCACGACCTCTGACTCGGGTTCGGC
CGGGGGGAAGGCGGCGGGATTCTCATTTGGTATGGAAAACTTGTGGATGG
AACACAAGAGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig104:223997..227359+ >mRNA_Ecto-sp6_S_contig104.943.1 ID=mRNA_Ecto-sp6_S_contig104.943.1|Name=mRNA_Ecto-sp6_S_contig104.943.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:223997..227359+ (Ectocarpus species6 EcLAC_371)
ATGAACGCGAACAACACAGGCCCATTCGGAGCCCATGCCTCTACGGACGG
CGTCAGCGGGGGTGGACCCTCACCCCCACCATCCGTTGCGCAAGCCTTCT
TGACGGGGCTACGCAGCCGTATGGCGGAGTGCAGCCACGACTTGCAGCAG
ATGCTGCAGGACGCTACTCAGAATGGACTGGTCTCAACAGAGGACCCGTC
CATGCAGCACTTCATTGACGCGGTGGAACACCTGAACGCGGCGCAGCACA
TAGCCACGAGCTTAGCCACACCTTTGGCTATTGCCGAACAACACGTCCAA
ACGTTCAAGGCGGCGCTGCAGATTGCCCAACAGAACGCCATGGACGGCGC
GGCTCAGCCCGCGATCAACCGTTCACAGGACACTCCGGCCCAGCAGCTGA
CTGCTCTCCTTAAAAAAAACAAGAACGACGCCCTGCAGGCCGAAGCGGAA
ATTATCCTCGCCCGCTTCTGGAACCAAGGTATCGCACACCACTACCGCAA
GAGGGCCGAGCTGTTGGAGAGCGCCTACTTCGGAAACGGCGACGAACGCG
CTGTTGTCGTCCTCTTGCGGCACGACAAGGAGATGGCGGAAAGCGCGTTC
GCCGATGCGAGCACCGTGGACTCTTCAACCCAGCTTTCCGGGGCCGCCCA
TGTCCACCGCGACGCCATGATAAGGTGCGGCGGGATTCTCATTTGGTATG
GAAAACTTGTGGATGGAACACAAGAGTGA back to top
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