mRNA_Ecto-sp6_S_contig104.937.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig104.937.1
Unique NamemRNA_Ecto-sp6_S_contig104.937.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:145184..147497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size597
Hectar predicted targeting categoryother localisation
Exons2
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348745.4245713-CDS-Ecto-sp6_S_contig104:145183..1455591682348745.4245713-CDS-Ecto-sp6_S_contig104:145183..145559Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 145184..145559 -
1682348745.4322-CDS-Ecto-sp6_S_contig104:147276..1474971682348745.4322-CDS-Ecto-sp6_S_contig104:147276..147497Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 147277..147497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.937.1prot_Ecto-sp6_S_contig104.937.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig104 145184..147497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig104.937.1

>prot_Ecto-sp6_S_contig104.937.1 ID=prot_Ecto-sp6_S_contig104.937.1|Name=mRNA_Ecto-sp6_S_contig104.937.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=199bp
MDSAEPPRLEEGGASRAGSEPPPEEADPRGFHELAFLGHSNASEAEPELE
ERDVGPEFDSYEDLDGDKLRLLDSFSIYYEDGRLAPPRALDSAKERGQTF
VAFGTLVAPLTTDASLKLISLDARLKCRVPPCLPKSLVGGAPEPLPWVAA
AGGASATPSTPKGGGGTSGRGGKGGANSGGGKKQHPKARQKATPPPPPA
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mRNA from alignment at Ecto-sp6_S_contig104:145184..147497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig104.937.1 ID=mRNA_Ecto-sp6_S_contig104.937.1|Name=mRNA_Ecto-sp6_S_contig104.937.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2314bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:145184..147497- (Ectocarpus species6 EcLAC_371)
ATGGACTCGGCCGAGCCTCCGCGGCTTGAGGAAGGCGGCGCCTCCCGGGC
CGGAAGCGAGCCGCCCCCAGAGGAAGCTGACCCACGAGGTTTCCACGAGC
TGGCCTTCTTGGGCCACAGCAACGCGTCCGAGGCTGAACCGGAGCTGGAA
GAGCGAGACGTCGGGCCTGAATTTGATTCGTACGAAGACCTGGATGGAGA
CAAGCTCCGGCTGCTCGACAGGTAGGCCGTGCTTCTTGCGTGGGCGGGGG
GAGCTTTATTTGCGCGGGAGTCGCGGCGGGCGAGTTAGAAGACCACCATC
GAGTCAGTTCTCACGCTCCCCCCGCTTCTCTTTGATTTTTTCTTTACTGT
TTTTGGAAGAAAGACAACACACAGACAGCAGCACCATGTTTGTCGCGCGC
GGAGAAAAGAAACAGCGGGCAGCCGCAGACGTTGGCCATATTGGGAACAG
CTTTCAAATGTTGACTTCAAGGGCGAGCTGGTTTTGTCGTATGGTTGCTG
ATGTTGTCGTGCATTTCAAGGCGCCGACTTCGCGGGTGCTGCTTCAAAGT
GCTTGGACACACCGGTTGGTTGTGGGTGCAACCGTTGTCGTCGCTGCCGC
AAATCCTTGGTCGCACGCGCGCGGCTGATAGCGGCACAGCGATCGAGATT
TACTGAAAAAGTTTTAAGTTCACCGAACCTCAGACAACACCGTCCCTGGG
GCCGGGGTGGGGCGTGTGCTTGCGGCAGGGAGGCGAAGCTATTGACCGGC
TTCGTGGGTGTTGGTATTATCGAAGGGGTTGGCACGATGCCACGTGTTGG
TGATGTCGTTGCCGCAGCAGTATGCTCGAAACTTCAACGCGCTTTCGCTG
CGGGGGAGCATGTCGGAACGCCCGCCAATTCTTTTCAAATACGTTTCGCT
GTCGGAACATCTTTCGATACAGCAGTACTTCTGTTTGTAGGATAGACAAG
TACCAGTATTAGCTAATCCCGAGTACAGCAGTACTTGTTGTATACGCTGA
AGAAGGTGAATTTCACATCACATGTTTGCTAGTATACAAGCCATTTCCAA
TGCTGAAATGCTGCCACACCATCACCACATTGCTATTATAGCCCTCGGGT
ATTTTTCCTTCTTGGGATTGAGTGTCGGCCTTTGATCTGGAGATTGGGCG
GTGAGGGCGATGAGAAGCAGCATGGCACACCTTCAGCAGTGGGTCGGCCC
TACTCCCGCCGCCGCATTGTGAATACCGCGTGCTCTTCAATGAGTACTTA
GTATGTACCACAAATCGCCTGAAGTTGGCCTGCTGTCTCGCAAAAGCTGG
ATGTAATTGTAGGCCACGGAATTCACCCCAGAGACAGCAGGAGTATTGAA
TCAACGACTTGACGGACTCGAAGCGGTTGGTGCATGTTTGTCGTCGTGTG
GGATGCTCCTTCTATCGGTTCCAGCACGCCCGTGTCTCCTCGTGGCGCCA
ACTGCAGCCGCGATGATGCAGACGACACGTACGCCGGCCGCTCGATGCGA
AGCTTCAGCTATACAAAAATACGATATGTTCGTCTCTGCTGTCCCATTAC
AATACGCTTGCTGTGTCGCTTCGTCAACAAGCCTACAGCGGTATGCAGAG
CACTTTTTTGTGTTCCTTTGCTGTGTTGCCCCCTTAAGTTGTTGTTGGGA
ACGCTAGGCTCTGAGCATGCGTGGACTTGACTAGTTCTGTTTTCCCGACA
TGCTCCCGAAGCCAAGAATAGGTACACAACAGCAGTATTGTAACACTTTT
GTGAAAGCCATCCCGTTGCCTACTATTATACTTCGTACGATTGCGCTATT
TACCTGCATCAAAAGTGGCGCCGCTCTAGCTACAGCACGTGCTGTCGGCG
GCCTTGGCACCATGAACCATAACCATAACCATCACAGAGACTCATTGAGG
GATCTTTCGTCTGCTGCGACGCGTGCCCCCCCCTTCAGCTTTTCAATCTA
CTACGAGGACGGTCGGCTAGCCCCTCCGAGAGCCCTCGACTCCGCCAAAG
AGCGGGGCCAAACCTTTGTGGCGTTCGGTACCCTGGTGGCGCCCCTTACA
ACCGACGCGAGCTTGAAGCTCATCTCCCTCGACGCACGGCTAAAGTGCAG
GGTACCCCCCTGCCTCCCCAAGAGTCTGGTCGGCGGGGCCCCCGAACCGC
TCCCGTGGGTGGCCGCGGCAGGGGGCGCGTCCGCCACGCCTTCCACGCCG
AAGGGGGGAGGGGGGACATCGGGCCGTGGAGGAAAGGGAGGGGCAAATAG
CGGGGGTGGGAAGAAGCAGCACCCCAAGGCGCGTCAAAAGGCAACGCCCC
CGCCACCACCCGCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:145184..147497-

>mRNA_Ecto-sp6_S_contig104.937.1 ID=mRNA_Ecto-sp6_S_contig104.937.1|Name=mRNA_Ecto-sp6_S_contig104.937.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:145184..147497- (Ectocarpus species6 EcLAC_371)
ATGGACTCGGCCGAGCCTCCGCGGCTTGAGGAAGGCGGCGCCTCCCGGGC
CGGAAGCGAGCCGCCCCCAGAGGAAGCTGACCCACGAGGTTTCCACGAGC
TGGCCTTCTTGGGCCACAGCAACGCGTCCGAGGCTGAACCGGAGCTGGAA
GAGCGAGACGTCGGGCCTGAATTTGATTCGTACGAAGACCTGGATGGAGA
CAAGCTCCGGCTGCTCGACAGCTTTTCAATCTACTACGAGGACGGTCGGC
TAGCCCCTCCGAGAGCCCTCGACTCCGCCAAAGAGCGGGGCCAAACCTTT
GTGGCGTTCGGTACCCTGGTGGCGCCCCTTACAACCGACGCGAGCTTGAA
GCTCATCTCCCTCGACGCACGGCTAAAGTGCAGGGTACCCCCCTGCCTCC
CCAAGAGTCTGGTCGGCGGGGCCCCCGAACCGCTCCCGTGGGTGGCCGCG
GCAGGGGGCGCGTCCGCCACGCCTTCCACGCCGAAGGGGGGAGGGGGGAC
ATCGGGCCGTGGAGGAAAGGGAGGGGCAAATAGCGGGGGTGGGAAGAAGC
AGCACCCCAAGGCGCGTCAAAAGGCAACGCCCCCGCCACCACCCGCG
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