mRNA_Ecto-sp6_S_contig104.932.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig104.932.1
Unique NamemRNA_Ecto-sp6_S_contig104.932.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:60053..66713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size868
Hectar predicted targeting categoryother localisation
Exons5
Cds size864
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348744.6151774-CDS-Ecto-sp6_S_contig104:60052..601261682348744.6151774-CDS-Ecto-sp6_S_contig104:60052..60126Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 60053..60126 +
1682348744.6248388-CDS-Ecto-sp6_S_contig104:65474..655681682348744.6248388-CDS-Ecto-sp6_S_contig104:65474..65568Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 65475..65568 +
1682348744.6341612-CDS-Ecto-sp6_S_contig104:65701..658601682348744.6341612-CDS-Ecto-sp6_S_contig104:65701..65860Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 65702..65860 +
1682348744.6506422-CDS-Ecto-sp6_S_contig104:66030..664891682348744.6506422-CDS-Ecto-sp6_S_contig104:66030..66489Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 66031..66489 +
1682348744.66254-CDS-Ecto-sp6_S_contig104:66633..667111682348744.66254-CDS-Ecto-sp6_S_contig104:66633..66711Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 66634..66711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.932.1prot_Ecto-sp6_S_contig104.932.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig104 60053..66711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig104.932.1

>prot_Ecto-sp6_S_contig104.932.1 ID=prot_Ecto-sp6_S_contig104.932.1|Name=mRNA_Ecto-sp6_S_contig104.932.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=288bp
TAGYPARARVVWIWVTRKSTAAVAMPSGDSAKDRCAKLVACARWNKRKCE
DGELLWVPDGCIVVSLEQFESLNRKTRKKMQKNREAGLEIEGGRYDKELA
ARPGLSREEIRKVYRDKWGGASATVSVTEFASALATTNMSCRPEVAREVA
FLRSCTADTGSPVFKLAGLLLFLHERGCDEAVKFGFFKQILLEHEGVSAP
ADGERKPAPVLTAETCFGPGSYFSNDSETGEAAKEWARKYGPVPFTPRPR
AGVVPVIRLRHVEPTTERQDSTPDGDFGDGSGGDGGCD
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mRNA from alignment at Ecto-sp6_S_contig104:60053..66713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig104.932.1 ID=mRNA_Ecto-sp6_S_contig104.932.1|Name=mRNA_Ecto-sp6_S_contig104.932.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6661bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:60053..66713+ (Ectocarpus species6 EcLAC_371)
ACAGCTGGCTACCCCGCACGCGCACGTGTAGTCTGGATCTGGGTTACGAG
GAAGAGTACGGCGGCGGTGGCCATGTGAGTGTATACCGTCCGGCAGCAGC
GCTCTGGTGGAAGTCGATATATGCATGCATAGGAAGCAGCTGTTGTCTGG
TCCAAGCGTTCGTCTTCTCTTGCCAGCAGCTTGATGAGACAAGTAGACTG
CTGTACAACGGGCGCTCTTTTCTCGCTGATCCCACGAGATCTTCGCATAC
TGCCTGCTATTTTGTCGCTGCTGAGTGCTGCTGTGATGATGTTGCGCAGT
GGGGGTGTTGTTGTGTACATAGATGACGGTAGGTGATGCTTCCAATTCTC
GCACAGCTGCTTTCCCGCAGAAAGTGTACATCTTTCAGAGGGCAACGCCT
GTTCCCGGAGACCCGTAGGCCGCGCTCTCTTCCTTTGTGATGTTGTTATT
GTGAATAAACACTGCTGTAAGGCGTGTTCTGTTTTCCTTCTGAGCCAGCG
GGGTCTTGGCAGTAGATCTGTGTGTACCGGAATCCGGGATATCTGGTGTC
GCTGAAATTTTTCACGTATCCGCTTCAAGCCAACAAGCACCCCGAGCCGA
TTTTTTTTCACCCCGATCCCAGAATGCTGTGTCACACGGAAAGCTAATGA
GACGCCCTGCATATGCCGAGCCCGCGGGAGCCCTGGTTTACCCACGCCGA
GTGCACCAACTTGCTTCCCTGTTCTCGCTGACCAGTGTCTTGTGCATTTG
TTCAGCATCAATCGACGGGTAAATTGACAGAAAAATAATTATTTACTGTT
ATTAGTGTGTTGCGATGGCGAAAACAGCCAAGCAGGGTGGAAAGTCCAAG
AAACCTAAGTTGGAGTCTCTTACACTGAAGACGAGATACTATTGTACGGG
TAAGTACATTTACAAGCGTTTTCATCACGCGTTGTCTCTCAGAGAGATGC
GCGTGAAGGACCAGCCCCGGTGGTTCGCTCTCACTGATTCGTATGGCGAG
GAAAGTTATGGATCTCTCGTCCAGACATACAAAATAAGAAAAAATCTACG
CCTGAGACACCGATTTTTGGGAACAAAATCTTGTCGATAAATCTTGATCT
TGGCCAAGATCTGTCAGTTTCACGATTTACGGGAACAAAATCTTCCGATA
TATCTTGGCCAAGATTTTTCGAGGCCCGAAATCTGCCCTTTCGAACAAAT
CTTGGAGGCGGCGTAACAAATCTTGCCTGGGTGCGGCGCGATCACCGAAG
GTCAGTCAACCTAATCGTCCATAACGCCATGAAATCTGCACGTGGCACAC
TCGCAAGGGTCTCTAACGCACCCTGGCGTCACTGTGTCGGCGCCACGGGC
ACCGACAGCGAACGAAAACAACCAAGGCGCGCCAAAAAAATGTGTATTTG
CCCTGACTCGTTCCACGTGCGTCATCACCAGTCTGTCGAGGGACCGTTCA
AAGAGTACGTTATTTTGAAGTAGAAAAACAGAGCAAGAGGAACGTTTTGC
CAACACTGCTCTGTCGTGTGCGACGCTTCTATCTCTTCATCGAATCACCC
CACACCCAATCCGTTTGCACCCGAGCCAAATCCGTGGGTGCAGGTGGCAG
CGCCGGAGGTTTGACCTCGGTACGCCTGCTACATCGTGAGATACGTGCAT
GGGTGTCATCGGCCTCGGGTTGATGCACTTTCTTGTCAGTTGAACAGCAA
TGGAACAGTTTTTTTCTCCGCTCGACATGAGCTCGTGGGCAACGGATTCA
ATGTTGCACCCCAGGTAGGCGCCCATCGCTAGTATCCACCCACAGTGTTG
AGCCAATACAGCTGGGGGAGGGATGCCTCTTCTACAACTGCGTCATGCTC
ACTTTTCGCCACACCTTGGCATTTTCTGTGGACCAAGAGGCCGTTGTGCC
TTTTTCAACTTCAAGCAAAAGAGAGGAACAACACGCCTCATTTTCAACAT
TCAAGATATTTCCCCCATATATCGCGATACTGCAAATCTTCGCGGAGATA
TATTGTGAGCAAATCTTGGGTCAAAATGCCAAGATATAATTGCAAGATTA
TGTTTCCATAAAGAAGGGTCTGATAAACGTTGGCTCAAATGCGGTGCGAA
ACCGTCTGCAGAAGATTGCAGAAAAGGGTGAGGGTAGATCTTTGAGTAAG
CTTTTCAACCCGAACGAGCAATGGTCTGGAGGAACAGGGAACAGGGATTT
CCACGACATGGTGCGTAGGTACTTTGGATTAAAGTACCACGGCACGATCG
TCGTGGAAGACAGCCCTGTTACGAGCGTGAAAACCAGGGCGCGACGGAGG
TCGTTCTGTGGTCGGGATATGATTCTTTGCAGTTATGCAGATCGATCCTC
TTTTTTTTGTTGATGTTGCCGATGGTTGCAGCTGGATCGCGCGCGTGGTT
TCAGGACTGGCGCAACCCAAAGACAGTCCGCCGCCTACCTCATCTGACGC
AACTGGCCGTTTCCAGAGCCTAATGCGTGAGATTTGATACATCGACGCGT
GAGCATCCGACGACCCAAAGACAGTCCCCCGCCTACCTCATCTGACGCAA
CTGGCCGTTTCCAGAGTCTAAGACCCATGTTTATGGTCGCCAAATCTTTG
ACAAAAATCTTCAAATGTTGTCAAACATTTGAGTACCGTTTTTATGGGAA
AAAAATCTTTATCGTGTGGTTTTCTCGAAATGCATCGCATGTGCGGCGGG
AATCGTGGTCTACCGCTACCAAACGATTTGTGACAGACAAACCACAAATG
CGTCATGGAAACTGAATGTAACGAGCTCGCGAAGGGCTCCCCACAACCCT
TGATGCACTGAGCTGATGCTGTGCCCGCCAATATGTAGCGATTGCGCTCC
GAGCGTGTGAGAAAAAATGTTCTTGGTGTCAAAAAGAGACCAAAACGTGC
GTCAGCGCTTCCCAACGGCAAAAAGTCGGCCGCCAAAAAGTCGGCCGCTT
GAGAGGACACGTGAGTACAAAACTATCCAGCTCTCGTCCTCTAGACCATC
GATTCATGTTTTGTCTTCTTGGGTGTCTTCTCCATCAACGACTCTCATCC
GGTTGTGCGTGGGTTGGCAGTGGCCGCGCTCAGCCGGTAGGGAGGCACAT
CGTTGTGCGCGCAAAGTTGTGGACACAACGTTTTTTCGGTCTATTTTTTC
ACTTGAATATAGAGCGCTTGTTCCTCCGTCCCAAAAAGACTTTTCAACAC
ATCGAGTTCACAGCGACGCGCCTCCTTGCCTGTTGAGTAAGTCCACTGGT
GAACCACGCACACCCGGATGAGAGCTGTTGATGGAGAAGACACCCAAGAA
AACAAAACATGAATCGATGGTCTACAGGACGAGAGCTGGATAGTTTTGTA
CTCACCTCTCCTCTCAAGCAGCCGACTTTTTGCCGTTCGGAGACACAAAC
CACGCTTTCTCCGTGCCCTCCAAACCACCCCTGTCTGTTTGtTTTTTTGT
GCACGCTTGACGAGCTCCCGCCATGTATCAGCTGGCAAAACATTGACAGG
GTGACTCTAGGGTTGTCCGGATCCCTCTATGAGCTTGCTACGTTCAGTGT
GCGCTACGCAGTGGTTGGTGCTTAGGACGGAAGGGGCGGTCGTCTACTAA
TCCCGCCGCTCTTGGGAAACATTTTCGCGACCTGCCCGATTTCAAAATGT
TTGAGAATATTTTGTCAAACGAGCGACTTTTGCCCCATTTCAAAATGTTT
GAGAATATTTTGCCGAAGATTTTCTCCCATAAACAGTGAAACAAAATCTT
TGTCCGCAAATGTTTGAAAATATAAACATTTTCGCGAAGATTTGACGACC
ATAAACATGGGTCTAATGCGTGAGATTTGAAACATCGACGCGTGAGCATC
CGACGACCCAAAGACAGTCCCCCGCCTACCTCATCTGACGCAACTGGCCG
TTTCCAGAGTCTAAGACCCATGTTTATGGTCGCCAAATCTTTGACAAAAA
TCTTCAAATGTTGTCAAACATTTGAGTACCGTTTTTATGGGAAAAAAATC
TTTATCGTGTGGTTTTCTCGAAATGCATCGCATGTGCGGCGGGAATCGTG
GTCTACCGCTACCAAACGATTTGTGACAGACAAACCACAAATGCGTCATG
GAAACTGAATGTAACGAGCTCGCGAAGGGCTCCCCACAACCCTTGATGCA
CTGAGCTGATGCTGTGCCCGCCAATATGTAGCGATTGCGCTCCGAGCGTG
TGAGAAAAAATGTTCTTGGTGTCAAAAAGAGACCAAAACGTGCGTCAGCG
CTTCCCAACGGCAAAAAGTCGGCCGCCAAAAAGTCGGCCGCTTGAGAGGA
CACGTGAGTACAAAACTATCCAGCTCTCGTCCTCTAGACCATCGATTCAT
GTTTTGTCTTCTTGGGTGTCTTCTCCATCAACGACTCTCATCCGGTTGTG
CGTGGGTTGGCAGTGGCCGCGCTCAGCCGGTAGGGAGGCACATCGTTGTG
CGCGCAAAGTTGTGGACACAACGTTTTTTTCGGTCTATTTTTTCACTTGA
ATATAGAGCGCTTGTTCCTCCGTCCCAAAAAAGACTTTTTCAACACATCG
AGTTCACAGCGACGCGCCTCCTTGCCTGTTGAGTAAGTCCACTGGTGAAC
CACGCACACCCGGATGAGAGCTGTTGATGGAGAAGACACCCAAGAAAACA
AAACATGAATCGATGGTCTACAGGACGAGAGCTGGATAGTTTTGTACTCA
CCTCTCCTCTCAAGCAGCCGACTTTTTGCCGTTCGGAGACACAAACCACG
CTTTCTCCGTGCCCTCCAAACCACCCCTGTCTGTTTGTTTTTGTGCACGC
TTGACGAGCTCCCGCCATGTATCAGCTGGCAAAACATTGACAGGGTGACT
CTAGGGTTGTCCGGATCCCTCTATGAGCTTGCTACGTTCAGTGTGCGCTA
CGCAGTGGTTGGTGCTTAGGACGGAAGGGGCGGTCGTCTACTAATCCCGC
CGCTCTTGGGAAACATTTTCGCGACCTGCCCGATTTCAAAATGTTTGAGA
ATATTTTGTCAAACGAGCGACTTTTGCCCCATTTCAAAATGTTTGAGAAT
ATTTTGCCGAAGATTTTCTCCCATAAACAGTGAAACAAAATCTTTGTCCG
CAAATGTTTGAAAATATAAACATTTTCGCGAAGATTTGACGACCATAAAC
ATGGGTCTAATGCGTGAGATTTGAAACATCGACGCGTGAGCATCCGACGA
CCCAAAGACAGTCCCCCGCCTACCTCATCTGACGCAACTGGCCGTTTCCA
GAGCCTAATGCGTGAGAGTTGATACATCGACGCGTGAGCATCCGACAACC
CACCGACAGTCCCCCGCCATGTTTGTTTGTTGTACCTCGTCTGACGCAAC
TGACTGTACCCAGCTCCTATTATGGGCCATGTTGATGTACGTAATCGCAT
TGTTGCTGAAATTGTCACGCAGGCCTTCAGGAGATTCAGCAAAAGACCGT
TGTGCGAAGCTCGTCGCGTGCGCCAGATGGAACAAGCGCAAGTGCGAGGA
TGGCGAACTGTTGTGGGTGAGTGTCAATGGTGTGTGCGTCCCACAATATT
GTTCGCGAGGCCGGAAAGGAATGGTCGCTTCGTCCCGTTGTCTTCGTCTC
ACAGGGCGTATCTGTAACTTGGTCGTGACCGTCGTTATCTGTATTGCAGG
TTCCAGACGGCTGCATCGTCGTCAGTCTCGAGCAATTCGAGTCTCTCAAC
AGGAAAACAAGAAAGAAGATGCAGAAAAACCGCGAAGCGGGCCTTGAGAT
TGAAGGTGGTCGGTACGACAAGGAACTTGCGGCCCGACCCGGTCTCTCGC
GTGAAGAAGTGAGTGTCAATGATCACCGTATGCGCACGGAATACTTGCAC
CGAGTCGAGAGCAACGGTTGTGGACACACTCGCAACCCCTATGCTTTTTC
ACGTCGATAGTGCGCACCTGAGCCCCATCTCATTAGCACCTGAGCCCCAT
CTCATTTTATCGGATCCATTTTCCACAGATAAGAAAAGTGTACCGGGACA
AGTGGGGAGGGGCGTCCGCGACGGTGTCTGTGACAGAGTTTGCATCGGCA
CTTGCGACTACCAATATGTCGTGTCGCCCTGAGGTTGCTCGAGAGGTTGC
TTTCCTTAGAAGCTGCACCGCCGACACGGGCTCCCCGGTGTTCAAGTTGG
CAGGGTTGTTGCTCTTTTTGCACGAGCGCGGGTGTGACGAGGCCGTCAAG
TTCGGCTTCTTTAAGCAGATCCTGCTCGAGCATGAAGGCGTCAGCGCCCC
TGCCGATGGTGAACGGAAGCCCGCACCTGTTCTTACGGCCGAGACCTGCT
TTGGCCCCGGAAGCTACTTCAGCAACGACTCGGAAACTGGGGAAGCCGCC
AAGGAGTGGGCGAGGAAGTACGGGCCGGTCCCCTTCACGCCCCGGCCCCG
TGCCGGCGTCGTTCCTGTGATTAGACTGCGCCATGTGGTGAGAAAACGTC
GTTGTCGGGGTAACAGGATTTTTTGCAAGAAGCTGGTACGACAATTAATT
TTTGAAGCTTCTGGTGCAATCCTGCTACGATCCCTGACTCAATCGCCCGC
CTCTCCCCGTATGTTGATTTTCCGTCTGCAGGAGCCTACAACCGAGCGCC
AGGACTCGACGCCTGACGGCGATTTCGGAGACGGCAGTGGAGGCGACGGC
GGATGCGACGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:60053..66713+

>mRNA_Ecto-sp6_S_contig104.932.1 ID=mRNA_Ecto-sp6_S_contig104.932.1|Name=mRNA_Ecto-sp6_S_contig104.932.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:60053..66713+ (Ectocarpus species6 EcLAC_371)
ACAGCTGGCTACCCCGCACGCGCACGTGTAGTCTGGATCTGGGTTACGAG
GAAGAGTACGGCGGCGGTGGCCATGCCTTCAGGAGATTCAGCAAAAGACC
GTTGTGCGAAGCTCGTCGCGTGCGCCAGATGGAACAAGCGCAAGTGCGAG
GATGGCGAACTGTTGTGGGTTCCAGACGGCTGCATCGTCGTCAGTCTCGA
GCAATTCGAGTCTCTCAACAGGAAAACAAGAAAGAAGATGCAGAAAAACC
GCGAAGCGGGCCTTGAGATTGAAGGTGGTCGGTACGACAAGGAACTTGCG
GCCCGACCCGGTCTCTCGCGTGAAGAAATAAGAAAAGTGTACCGGGACAA
GTGGGGAGGGGCGTCCGCGACGGTGTCTGTGACAGAGTTTGCATCGGCAC
TTGCGACTACCAATATGTCGTGTCGCCCTGAGGTTGCTCGAGAGGTTGCT
TTCCTTAGAAGCTGCACCGCCGACACGGGCTCCCCGGTGTTCAAGTTGGC
AGGGTTGTTGCTCTTTTTGCACGAGCGCGGGTGTGACGAGGCCGTCAAGT
TCGGCTTCTTTAAGCAGATCCTGCTCGAGCATGAAGGCGTCAGCGCCCCT
GCCGATGGTGAACGGAAGCCCGCACCTGTTCTTACGGCCGAGACCTGCTT
TGGCCCCGGAAGCTACTTCAGCAACGACTCGGAAACTGGGGAAGCCGCCA
AGGAGTGGGCGAGGAAGTACGGGCCGGTCCCCTTCACGCCCCGGCCCCGT
GCCGGCGTCGTTCCTGTGATTAGACTGCGCCATGTGGAGCCTACAACCGA
GCGCCAGGACTCGACGCCTGACGGCGATTTCGGAGACGGCAGTGGAGGCG
ACGGCGGATGCGAC
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