mRNA_Ecto-sp6_S_contig103.919.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.919.1
Unique NamemRNA_Ecto-sp6_S_contig103.919.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.919.1 vs. uniprot
Match: A0A6H5JGA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.100e-9
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3 
Query:  309 NESHDVNQLLAKLSNFKAWTRV*DHPDTLALAKSISDYLG 428
            NESH+VN+LLA  SNF AWTRV D PD+L LAKSI DYLG
Sbjct:   30 NESHEVNRLLANPSNFDAWTRVSDDPDSLMLAKSIGDYLG 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGA4_9PHAE1.100e-975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:451640..455190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1979
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_001720.1
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348743.3489444-UTR-Ecto-sp6_S_contig103:451639..4533111682348743.3489444-UTR-Ecto-sp6_S_contig103:451639..453311Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 451640..453311 -
1682348743.357555-UTR-Ecto-sp6_S_contig103:454278..4544141682348743.357555-UTR-Ecto-sp6_S_contig103:454278..454414Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 454279..454414 -
1682348743.3676953-UTR-Ecto-sp6_S_contig103:455019..4550641682348743.3676953-UTR-Ecto-sp6_S_contig103:455019..455064Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 455020..455064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348743.3774874-CDS-Ecto-sp6_S_contig103:455064..4551901682348743.3774874-CDS-Ecto-sp6_S_contig103:455064..455190Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 455065..455190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.919.1prot_Ecto-sp6_S_contig103.919.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 455065..455190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.919.1

>prot_Ecto-sp6_S_contig103.919.1 ID=prot_Ecto-sp6_S_contig103.919.1|Name=mRNA_Ecto-sp6_S_contig103.919.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=42bp
MRLSGSRVRCSDYVEREATAKVVWSGFTPAVGKNSAMVLWG*
back to top

mRNA from alignment at Ecto-sp6_S_contig103:451640..455190-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.919.1 ID=mRNA_Ecto-sp6_S_contig103.919.1|Name=mRNA_Ecto-sp6_S_contig103.919.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3551bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:451640..455190- (Ectocarpus species6 EcLAC_371)
ATGCGTCTTTCCGGCAGCAGGGTTCGCTGTAGCGACTATGTAGAAAGAGA
AGCGACAGCGAAGGTGGTGTGGAGTGGATTTACTCCTGCTGTGGGCAAGA
ACTCGGCGATGGTTCTCTGGGGTTGACGCGGCGACGTCTGTACAACACGA
GCTCTCGGACAAGCGCAAAGAGTGAGTAGTGCGGAGGAGTGACGGCTTTG
GGGGTGTTGTTTTACGGTGAACGCTGCCTCTTGCAATATTCTCTGGACAC
CTCTAGCATGAGAACCGATTTTGTAGTATACCACCCAGCACAGCAAACCG
CCGCGTGATTACCGTTGGTGACACAAGATACCATACCCCCCTCGGCCGAT
TTTCAAAGCTCGACTACTGGTACTATACTCCGCAGTAGAAAGAGTGGCGG
TGCCGTAAATGGTGGCGGTGAAACCGTCTCGTCGAGGTCTTTCCGAAAAA
AAGTCATGTGATTTTGACGTTCTCTTCGTCGTGGGTGTAACACGGTACAA
TGTATGTACACAGTCCAGCGGCGACCACGCTCGGGGGGGGTGGTATCTTG
AGCGGCAGCTGGTGTACAGTATTGCACGGACGGGAAGAAAGTGCGCGCAA
ACAAACAATACGGAACATTCCTCGGGTAACATTCCAACTACTGATGCAAC
TGTTTGCTGTTCGCACGTCCACACTACAGCAGCAGTAGATCTATAGCTTG
AATGCCAAGAGGTTGGGCCTTGTTGACACTGGCCGCACCTTCCCTCTTCG
ACAACCCTACTGCATGACGTGAGCAGCCACATCGAGGCGGAGAAGGAATC
AATATTATAGCGGCAAATGGACTTGCGAGTGCGGGAAAGATCTCGGGTCC
GATCCCACCCGGCGGGCCGCAGCGCACGTGCAGCAGCACCACGAGGGTTC
ACAGGATCACCAGTGAGTACAGGTGTAAACGTTTCCGTGAATGAAACAGC
AGTAGTAGTAGTGCTTGCTGGTGCCCGACTCGACCCCACCGAAAAAATTC
AAGTGCATAGCTACATACACGAGATTTGCAGACAGACGTGCTTACAGCAG
TCGAAAAAATGGCGTTGTTTGCATGGATGGTCAGGTGAGCCTTGAAAGCG
ACGGCGAGAAGCAGGACAGATACGATCACTGGTTGACAGCCCGTTCGAGG
AAAGAATACCACAGCATTCGGAGGAGTGTTGTCAGAAGTGAGTGGGAAAA
AGCCTTCTTTAGCCTTCTTTCGTAACTTATTTCCCCCCGAGACCTTGAAA
AGGCTCGCCTGGTCTGTCTCAACAGCGTCTGTCGTAGGTCCTGCCGTCTA
CGTAGAACCATCAACGATCACGTCGCCACGTTTTGTCCTTAGCGTGTTGT
TTTGCCCCGAGATCTTGAGAAGGCCGTCCTTTCTCAACAACGTCTCCGCT
GCCGTTTTTGCAGAACCATGACCGATCACCTCGCGACAACGGAGACCCTA
GAATAGCGCGTATGCAAACATAAACTTGTTTTGCTTTTTGTAAAGGAACA
GTGTGAAAGAAAAGGCACTGCAGTGTAGCGGTTCTGCTCAAATATTTAAC
TATATATGTATCGCGCGCGCATGTTATGGGATTTGAATGTAGCCAGTGCC
GACGGTATTGCGGAGTAATTCCCAGAGGAAAGTGCGGGAGATGTAACTCC
CGATGGAAGGATGAACAGGGGACAGGACCTTTGTGGCCCCTTTCAGAGGG
AGCATGTCCTCCCCCTCTGTGCTCAGTCTACCTTTGAGAGCAAAGCAACA
GCAAGCACTGCTGTTCCAAGAGATTAATAAACAAGTGAGTCTTCATCAGG
GTCTTCAGGGATCGCTACGCGTGTAATCCCACAACACGCAACCCTGTACG
CTTGATGCGCCTCCCTCCCTCCCTCTCAGGAATGAGAGCCACGACGTCAA
CCAGTTGCTAGCCAAGCTCTCTAACTTTAAGGCCTGGACCAGAGTATGAG
ACCACCCGGATACCCTGGCGCTAGCCAAGAGCATCAGCGACTACCTCGGG
TGATTGTTGCTCTGGTGGCGAGAGAGGGGCCCCGCGTTTCGCGTTTTTTT
TTGCACGGTGGGGCAATGTGCTCGGCTGGGGGTATAGCGGAGGAGGCGGT
CACGCGCGCGCTTGCGGAGGAGGGGATTCGCGGATGTATTCGAGGATGGG
GGGGGGTCTGGATGATGATGAGGCGTGTTGCGCGGTGGGTGTTTCTGGCA
AGGGATGTTGGTCGTTCGAGATGATAGTGCGTGGGGGAGAAAGGGAGCCC
CGCGCAGGAAAAATGAAACCGCGGTGCCCATTATATACCCCTTTCTCACA
CAAGCTGATGCTGGAATGGATAGAAAGTGTCTCATCTTGCCGCCGCTTCC
GCTGCTGCTGCAGACACAGCTTTGACCTTCAGTTCGGACGAGCAGCGGTC
ACTGTGGGGTTGTCATTAGTCGTTGCATGGATGTTTTTTCTTTAGGGGAA
GGGAGAGGAGGGGGGGCAGCGACAATAGGTTGCGATGTTGTGATGAAAAG
TCGCTGCTAGTCTAAAGTTGCGGGTATGTAGGTAATGAACACCGGGGATT
TGGTAGATATATGTATAGATTTTTCATTGTGTTTTTTCAGAGGGTGTACC
ACTGCTGATGTGACTGGTTGGAGGGAGGAGCGAGAAGCAAGAGATGAAGA
GAAAAGGGTGCCGCTTCAAAATGCTTTTTTCTTGGCCGACACACGTACGT
CTGGCACACGCAGCAGCCCGCGAAACACACCCGACAGCAGAGTGCGTCGT
TTTCGTAACTAGAGAGTAGAGGTATAGAGTGAGACTTGCATTCTGATGAG
GCAAGCAAGCAGCAGAGCTGAGTTAGGTTCGGTTCGCCTCCGTTTACGGC
CGCGAGTCGACGTAGTACTCGGCATGGCAGAGGCTATGTAGAGGTGCCGA
ATAGGTGATTTTCTATGTGCAGACTTTTCAGCTCCCGTCAGAATTGCGGC
GCGATTGAATGCGCACCCGCTTTTGCCGCGGCCGTTACCAGTGAGGTAGA
GGATAGAAAGGTTGGACCGTCGATCGAAACTCGGGATGAGCGCAACGACG
AGCCTTTCCGGCGCGCGTTGAACGGCCGGCGGCTGGCTGGCTCCACATCC
GTGTGGGTTCCTAAAATTGAGAGCTTGTAAGGGTTCGGCCAATCAACGAT
GAACGAGCGAACGCCGTGCGTGGCTTTCCGTTCCCTGGCCTAGTTGTTTT
TTCGAGTTGAATGCTCAAAATCAGTAATCGGTGCAGATGCGAAGAGGGCG
GTGGATGCGTTCATGTGCACTTGGTTGCTACTTTTCTGATGAACGCATCC
GCTGGGGTCGTGGCCGGCGTTTGTGATGCCGCCTTTTTGTTCGCTGGATA
TGTAAAGAAGTTCCTTGTGTTCATCATGCCTGCTGTCCTCACCGGGCAGA
GGTGTGTGCTCTGCTGCTTCTCTGCGCTCCTCGGTTGTTCTAAGAATTTA
TTCGAGGATGTGGTACGGTTACTCCACCATCATGTTCTTAGCTCGAGTTA
CAGTGAAGTGTAGCGCCAGGTCAGACAGGTTTCATATGCACCACACACGA
T
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:451640..455190-

>mRNA_Ecto-sp6_S_contig103.919.1 ID=mRNA_Ecto-sp6_S_contig103.919.1|Name=mRNA_Ecto-sp6_S_contig103.919.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:451640..455190- (Ectocarpus species6 EcLAC_371)
ATGCGTCTTTCCGGCAGCAGGGTTCGCTGTAGCGACTATGTAGAAAGAGA
AGCGACAGCGAAGGTGGTGTGGAGTGGATTTACTCCTGCTGTGGGCAAGA
ACTCGGCGATGGTTCTCTGGGGTTGA
back to top