Homology
BLAST of mRNA_Ecto-sp6_S_contig103.919.1 vs. uniprot
Match: A0A6H5JGA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA4_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.100e-9 Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3 Query: 309 NESHDVNQLLAKLSNFKAWTRV*DHPDTLALAKSISDYLG 428
NESH+VN+LLA SNF AWTRV D PD+L LAKSI DYLG
Sbjct: 30 NESHEVNRLLANPSNFDAWTRVSDDPDSLMLAKSIGDYLG 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1979 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 3 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-23_001720.1 |
| Cds size | 126 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348743.3489444-UTR-Ecto-sp6_S_contig103:451639..453311 | 1682348743.3489444-UTR-Ecto-sp6_S_contig103:451639..453311 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig103 451640..453311 - |
| 1682348743.357555-UTR-Ecto-sp6_S_contig103:454278..454414 | 1682348743.357555-UTR-Ecto-sp6_S_contig103:454278..454414 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig103 454279..454414 - |
| 1682348743.3676953-UTR-Ecto-sp6_S_contig103:455019..455064 | 1682348743.3676953-UTR-Ecto-sp6_S_contig103:455019..455064 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig103 455020..455064 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348743.3774874-CDS-Ecto-sp6_S_contig103:455064..455190 | 1682348743.3774874-CDS-Ecto-sp6_S_contig103:455064..455190 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 455065..455190 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.919.1 >prot_Ecto-sp6_S_contig103.919.1 ID=prot_Ecto-sp6_S_contig103.919.1|Name=mRNA_Ecto-sp6_S_contig103.919.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=42bp
MRLSGSRVRCSDYVEREATAKVVWSGFTPAVGKNSAMVLWG* back to topmRNA from alignment at Ecto-sp6_S_contig103:451640..455190- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig103.919.1 ID=mRNA_Ecto-sp6_S_contig103.919.1|Name=mRNA_Ecto-sp6_S_contig103.919.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3551bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:451640..455190- (Ectocarpus species6 EcLAC_371)
ATGCGTCTTTCCGGCAGCAGGGTTCGCTGTAGCGACTATGTAGAAAGAGA
AGCGACAGCGAAGGTGGTGTGGAGTGGATTTACTCCTGCTGTGGGCAAGA
ACTCGGCGATGGTTCTCTGGGGTTGACGCGGCGACGTCTGTACAACACGA
GCTCTCGGACAAGCGCAAAGAGTGAGTAGTGCGGAGGAGTGACGGCTTTG
GGGGTGTTGTTTTACGGTGAACGCTGCCTCTTGCAATATTCTCTGGACAC
CTCTAGCATGAGAACCGATTTTGTAGTATACCACCCAGCACAGCAAACCG
CCGCGTGATTACCGTTGGTGACACAAGATACCATACCCCCCTCGGCCGAT
TTTCAAAGCTCGACTACTGGTACTATACTCCGCAGTAGAAAGAGTGGCGG
TGCCGTAAATGGTGGCGGTGAAACCGTCTCGTCGAGGTCTTTCCGAAAAA
AAGTCATGTGATTTTGACGTTCTCTTCGTCGTGGGTGTAACACGGTACAA
TGTATGTACACAGTCCAGCGGCGACCACGCTCGGGGGGGGTGGTATCTTG
AGCGGCAGCTGGTGTACAGTATTGCACGGACGGGAAGAAAGTGCGCGCAA
ACAAACAATACGGAACATTCCTCGGGTAACATTCCAACTACTGATGCAAC
TGTTTGCTGTTCGCACGTCCACACTACAGCAGCAGTAGATCTATAGCTTG
AATGCCAAGAGGTTGGGCCTTGTTGACACTGGCCGCACCTTCCCTCTTCG
ACAACCCTACTGCATGACGTGAGCAGCCACATCGAGGCGGAGAAGGAATC
AATATTATAGCGGCAAATGGACTTGCGAGTGCGGGAAAGATCTCGGGTCC
GATCCCACCCGGCGGGCCGCAGCGCACGTGCAGCAGCACCACGAGGGTTC
ACAGGATCACCAGTGAGTACAGGTGTAAACGTTTCCGTGAATGAAACAGC
AGTAGTAGTAGTGCTTGCTGGTGCCCGACTCGACCCCACCGAAAAAATTC
AAGTGCATAGCTACATACACGAGATTTGCAGACAGACGTGCTTACAGCAG
TCGAAAAAATGGCGTTGTTTGCATGGATGGTCAGGTGAGCCTTGAAAGCG
ACGGCGAGAAGCAGGACAGATACGATCACTGGTTGACAGCCCGTTCGAGG
AAAGAATACCACAGCATTCGGAGGAGTGTTGTCAGAAGTGAGTGGGAAAA
AGCCTTCTTTAGCCTTCTTTCGTAACTTATTTCCCCCCGAGACCTTGAAA
AGGCTCGCCTGGTCTGTCTCAACAGCGTCTGTCGTAGGTCCTGCCGTCTA
CGTAGAACCATCAACGATCACGTCGCCACGTTTTGTCCTTAGCGTGTTGT
TTTGCCCCGAGATCTTGAGAAGGCCGTCCTTTCTCAACAACGTCTCCGCT
GCCGTTTTTGCAGAACCATGACCGATCACCTCGCGACAACGGAGACCCTA
GAATAGCGCGTATGCAAACATAAACTTGTTTTGCTTTTTGTAAAGGAACA
GTGTGAAAGAAAAGGCACTGCAGTGTAGCGGTTCTGCTCAAATATTTAAC
TATATATGTATCGCGCGCGCATGTTATGGGATTTGAATGTAGCCAGTGCC
GACGGTATTGCGGAGTAATTCCCAGAGGAAAGTGCGGGAGATGTAACTCC
CGATGGAAGGATGAACAGGGGACAGGACCTTTGTGGCCCCTTTCAGAGGG
AGCATGTCCTCCCCCTCTGTGCTCAGTCTACCTTTGAGAGCAAAGCAACA
GCAAGCACTGCTGTTCCAAGAGATTAATAAACAAGTGAGTCTTCATCAGG
GTCTTCAGGGATCGCTACGCGTGTAATCCCACAACACGCAACCCTGTACG
CTTGATGCGCCTCCCTCCCTCCCTCTCAGGAATGAGAGCCACGACGTCAA
CCAGTTGCTAGCCAAGCTCTCTAACTTTAAGGCCTGGACCAGAGTATGAG
ACCACCCGGATACCCTGGCGCTAGCCAAGAGCATCAGCGACTACCTCGGG
TGATTGTTGCTCTGGTGGCGAGAGAGGGGCCCCGCGTTTCGCGTTTTTTT
TTGCACGGTGGGGCAATGTGCTCGGCTGGGGGTATAGCGGAGGAGGCGGT
CACGCGCGCGCTTGCGGAGGAGGGGATTCGCGGATGTATTCGAGGATGGG
GGGGGGTCTGGATGATGATGAGGCGTGTTGCGCGGTGGGTGTTTCTGGCA
AGGGATGTTGGTCGTTCGAGATGATAGTGCGTGGGGGAGAAAGGGAGCCC
CGCGCAGGAAAAATGAAACCGCGGTGCCCATTATATACCCCTTTCTCACA
CAAGCTGATGCTGGAATGGATAGAAAGTGTCTCATCTTGCCGCCGCTTCC
GCTGCTGCTGCAGACACAGCTTTGACCTTCAGTTCGGACGAGCAGCGGTC
ACTGTGGGGTTGTCATTAGTCGTTGCATGGATGTTTTTTCTTTAGGGGAA
GGGAGAGGAGGGGGGGCAGCGACAATAGGTTGCGATGTTGTGATGAAAAG
TCGCTGCTAGTCTAAAGTTGCGGGTATGTAGGTAATGAACACCGGGGATT
TGGTAGATATATGTATAGATTTTTCATTGTGTTTTTTCAGAGGGTGTACC
ACTGCTGATGTGACTGGTTGGAGGGAGGAGCGAGAAGCAAGAGATGAAGA
GAAAAGGGTGCCGCTTCAAAATGCTTTTTTCTTGGCCGACACACGTACGT
CTGGCACACGCAGCAGCCCGCGAAACACACCCGACAGCAGAGTGCGTCGT
TTTCGTAACTAGAGAGTAGAGGTATAGAGTGAGACTTGCATTCTGATGAG
GCAAGCAAGCAGCAGAGCTGAGTTAGGTTCGGTTCGCCTCCGTTTACGGC
CGCGAGTCGACGTAGTACTCGGCATGGCAGAGGCTATGTAGAGGTGCCGA
ATAGGTGATTTTCTATGTGCAGACTTTTCAGCTCCCGTCAGAATTGCGGC
GCGATTGAATGCGCACCCGCTTTTGCCGCGGCCGTTACCAGTGAGGTAGA
GGATAGAAAGGTTGGACCGTCGATCGAAACTCGGGATGAGCGCAACGACG
AGCCTTTCCGGCGCGCGTTGAACGGCCGGCGGCTGGCTGGCTCCACATCC
GTGTGGGTTCCTAAAATTGAGAGCTTGTAAGGGTTCGGCCAATCAACGAT
GAACGAGCGAACGCCGTGCGTGGCTTTCCGTTCCCTGGCCTAGTTGTTTT
TTCGAGTTGAATGCTCAAAATCAGTAATCGGTGCAGATGCGAAGAGGGCG
GTGGATGCGTTCATGTGCACTTGGTTGCTACTTTTCTGATGAACGCATCC
GCTGGGGTCGTGGCCGGCGTTTGTGATGCCGCCTTTTTGTTCGCTGGATA
TGTAAAGAAGTTCCTTGTGTTCATCATGCCTGCTGTCCTCACCGGGCAGA
GGTGTGTGCTCTGCTGCTTCTCTGCGCTCCTCGGTTGTTCTAAGAATTTA
TTCGAGGATGTGGTACGGTTACTCCACCATCATGTTCTTAGCTCGAGTTA
CAGTGAAGTGTAGCGCCAGGTCAGACAGGTTTCATATGCACCACACACGA
T back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig103:451640..455190- >mRNA_Ecto-sp6_S_contig103.919.1 ID=mRNA_Ecto-sp6_S_contig103.919.1|Name=mRNA_Ecto-sp6_S_contig103.919.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:451640..455190- (Ectocarpus species6 EcLAC_371)
ATGCGTCTTTCCGGCAGCAGGGTTCGCTGTAGCGACTATGTAGAAAGAGA
AGCGACAGCGAAGGTGGTGTGGAGTGGATTTACTCCTGCTGTGGGCAAGA
ACTCGGCGATGGTTCTCTGGGGTTGA back to top
|