mRNA_Ecto-sp6_S_contig103.917.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.917.1
Unique NamemRNA_Ecto-sp6_S_contig103.917.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI)

HSP 1 Score: 596 bits (1536), Expect = 3.880e-213
Identity = 298/312 (95.51%), Postives = 300/312 (96.15%), Query Frame = 1 
Query:   79 MLLSLVITAGAVLGVVESFLPPAALQCHPSVPFGTAAAARLGRNKGLPVLAASSRDGGSGGGVEDQGRRWGEMDRGGXXXDADDDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWSKLLRLMGGKYQEVAKRNEPRL 1014
            MLLSLVITAGA LGVVESFLPPAALQCHPSVPFGTAAAARLGRNKGLPV AASSRDGGSGGGVEDQGRRW EMD   XXX   DDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLH+ NVEGSDPVLDGGVFAGGFDTLVDVTRQ G VSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLW+KLLRLMGGKYQEVAKRNEPRL
Sbjct:    1 MLLSLVITAGAALGVVESFLPPAALQCHPSVPFGTAAAARLGRNKGLPVPAASSRDGGSGGGVEDQGRRWEEMDXXXXXXXXXDDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHDANVEGSDPVLDGGVFAGGFDTLVDVTRQ-GTVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWTKLLRLMGGKYQEVAKRNEPRL 311
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A836CNM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM8_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.540e-58
Identity = 106/239 (44.35%), Postives = 140/239 (58.58%), Query Frame = 1 
Query:  319 DADDDLLSEVKGRDWRLFRKNLITRYGED---------IGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHP--LWSKLLRLMGGKYQEVAKRN 1002
            D + D++ +VK  DWR FR NL+ R  E+           +  W D  WAH+IG VE GC+L+A E +  G FHQ+ +LVL H  + GTLGLILNRP  +R+  +PGL  D+   FG   V  GGP+G G MT LH          +  G++ GGF+ LV +  Q+GRV    +R  HGH+AW PGQL  EL  + W++AAAAP L+T        P  +W +LL LMGG Y EVA+RN
Sbjct:   43 DEELDVIPDVKQLDWRAFRANLVRRSREEGFGGSSAXXXARRKWRDDAWAHEIGVVEKGCVLLAHETLQ-GVFHQTAVLVLDHDDNAGTLGLILNRPTKRRIAGVPGLGRDMQAAFGQCAVHYGGPVGAGGMTALHGVKQARGGQEIAPGLYVGGFEDLVRLA-QEGRVDGSSLRLAHGHAAWGPGQLSRELRADFWYLAAAAPALVTGAGAAGRAPSRMWHQLLDLMGGSYAEVARRN 279
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A7S2Y026_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y026_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.730e-53
Identity = 94/229 (41.05%), Postives = 146/229 (63.76%), Query Frame = 1 
Query:  322 ADDDLLSEVKGRDWRLFRKNLITRY-GEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTN-VEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWSKLLRLMGGKYQEVAKRN 1002
             D + +++V   DWR FR  L+ +Y G++  ++ W++  WAHDIG +E GCLL+A++ +D  TF QSVILVL+H  D GT G++LNRP    + ++  + P L E FG++ ++ GGPMGL  + V+H    VEG+  +  G ++ GG   L +   +QG++   +VRF  GH+AW+PGQL+ E++   W+ A  +PEL+   C     PLW ++L LMGG+Y E+ K+N
Sbjct:   58 GDSETINDVGNVDWRDFRAKLVAQYSGKE--RENWTEDRWAHDIGQIENGCLLLASDVMDDDTFWQSVILVLNHDPDNGTFGIVLNRPTGAHVCNVRDIVPALREAFGEAPLYLGGPMGLDEVNVVHAVEGVEGAIEIRKG-LYHGGVAGLQE-RAEQGQLDLAKVRFEAGHAAWNPGQLEQEIEKGWWYPAVCSPELVVRPCIGLPVPLWCQILDLMGGEYAEIGKKN 282
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A835Z6U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U1_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.010e-40
Identity = 96/266 (36.09%), Postives = 129/266 (48.50%), Query Frame = 1 
Query:  295 MDRGGXXXDADDDLLSEVKGRDWRLFRKNLITRYGEDIGKDP---WSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTR-----------------------------------QQGRVSKDRVRFVHGHSAWSPGQ---------------------LQGELDHNQWFVAAAAPELIT 915
            M  GG    +D D + +VK +DWR FR NL+ R  E+    P   WS G WAHDIG VE GC+L+A E ++ G F+Q+V+L+L H   +GTLGLI+NRP  +R+  +PGL  D+   FGD  V  GGP+G G MT LH+         +   V+ GG + LV + +                                   Q+G      +R   GH+AW PGQ                     L+ EL  N W+VA+AAPELIT
Sbjct:   45 MSSGGGADPSDLDTIPDVKSKDWRAFRANLVRRSAEEGFGAPHRGWSGGKWAHDIGCVEKGCVLLAHESLE-GVFYQTVVLILDHDDTRGTLGLIINRPTKKRIAGVPGLGRDVQRAFGDCPVLYGGPVGAGGMTALHSAGEAKGCQEVAPSVYVGGLEGLVRLAQEATPWSVVRRIAALLWRRLVNLGGKGRALRSGGVAQRGHAHGSTLRLAVGHAAWVPGQEKETASNTQAPAPLGAERLRHLKRELRANFWYVASAAPELIT 309
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: R7QN66_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN66_CHOCR)

HSP 1 Score: 138 bits (348), Expect = 1.520e-34
Identity = 88/231 (38.10%), Postives = 125/231 (54.11%), Query Frame = 1 
Query:  358 DWRLFRKNLI------TRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGT-----FHQSVILVLSHARDQGTLGLILNRP-----GPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHN-TNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWSKLLRLMGGKYQEVAKR 999
            DWR FR  L+      T  GE   K+      WAH++  VEAGCLLIA+ E   G      F  SV+LVL+H  D+GT+G+ILNRP        RLR      P        + ++ GGP+ L ++  LHN  ++ G+  V+DG   +G  + L  + R  G+++ D  RF  G+S WSPGQLQ E+D   W+  A+  EL+TE        L  KLL+LMGG++ ++ +R
Sbjct:   42 DWRSFRARLVQTEQTTTPAGEPSTKE------WAHEVPFVEAGCLLIASPEHFVGEHSCSFFANSVVLVLTHHSDKGTVGVILNRPVAAAVSEPRLRGAVSAAP--------APLYLGGPVALDSLLALHNDASIPGAGQVVDGVATSGVAEVLSRIER--GQMNVDSCRFFCGYSGWSPGQLQEEVDSGVWYTCASCTELVTEKGLHRDDYLTKKLLKLMGGRFTQIGER 256
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A1Y1HP74_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HP74_KLENI)

HSP 1 Score: 125 bits (313), Expect = 7.140e-29
Identity = 83/253 (32.81%), Postives = 132/253 (52.17%), Query Frame = 1 
Query:  319 DADDDLLSEVKGRDWRLFRKNLITRYG---------EDIGKDPWSD---------GCWAHDIGTVEAGCLLIATEEI---DSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSL----PGLQPDLAEVFGDSQVFDGGPMGLGTMTVLH-NTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWSKLLRLMGGKYQEVAKR 999
            D D    +E+   DWR FR  L+ R           E +  D   D         G WAH +   E G L+IA       +   F+ +VIL+L H  ++G++G+ILN+P    L +L      L P+LA      +++ GG +G G   VLH +++++G+  V++G V+ GGF+ + +  R  G+   D  R+ H ++ W PGQL+ E+    WF+ + + +L+  H +    PLW ++L+LMGG Y EVAKR
Sbjct:   91 DDDSPTAAEI---DWREFRARLVARSAAEAAERAREEQLESDAAEDRAVPEIQPGGSWAHPLVLPEVGALVIAKPGYFNQNQQYFNHAVILLLHHG-EEGSMGIILNKPTEHTLGTLFEGIDTLSPELAS----GRLYLGGDVGHGATHVLHRHSDLDGTRKVVEG-VYTGGFEAIGEHIRA-GKSECDDYRWFHMYAGWGPGQLENEVKAGVWFLGSCSRDLLLTHSEDLKTPLWDEVLQLMGGTYAEVAKR 333
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A7S1BIP2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIP2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.310e-29
Identity = 74/207 (35.75%), Postives = 112/207 (54.11%), Query Frame = 1 
Query:  421 WSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQ-----PD-LAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHP-------LWSKLLRLMGGKYQEVAKRN 1002
            +++  WAH +  VE GCLL+A+E++  G FHQ+V+L++SH  + G++G+++NRP  ++++ L G       PD +   F +S V  GGP+      +LH  N+      L  GVF GG   L    R  G     R   V GH+AW PGQLQ E+    W +AAA+ +LI  +      P       LWS++L  M G Y+++A  N
Sbjct:  250 FNENRWAHPLSHVEKGCLLLASEKL-GGIFHQTVVLIISHNDNLGSMGVVINRPLGKKIKELSGPARKSTIPDAMRSSFAESTVTYGGPVQTDHYAILHGYNLAEGAVELTKGVFVGGHTDLERDVRS-GCFLPMRALLVKGHAAWVPGQLQREISKGVWHIAAASSDLILRYAGAKEDPETEFPDNLWSEILSAMDGDYKKIALAN 454
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A835WJ62_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WJ62_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 3.520e-27
Identity = 77/220 (35.00%), Postives = 118/220 (53.64%), Query Frame = 1 
Query:  358 DWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGT---FHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLH-NTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELI---TEHCDKPFHPLWSKLLRLMGGKYQEVAK 996
            DWR FR  L+++     G    S   WAH I   E G LL+A   +   +   FH++ IL+L H  D G+ G+ILNRP    +R +P  +P     F D +++ GG +G G + VLH +++++G+  V+ G V+ GG D   D     GR      R+   ++ W+PGQL  E     WF AAA+P+L+    EH   P +  W +++ L+GG Y E++K
Sbjct:   80 DWREFRAKLVSQ-SRGQGTASTSADEWAHIIPKPEKGALLLAHPLLFQNSQTYFHRAAILLLEHG-DNGSYGVILNRPSTYFIRDIPLKRPQTQ--FNDCRLYIGGDVGGGEVQVLHPHSDLQGAVEVVKG-VYMGGLDAGRDAI-DAGRAKAQDFRWFSAYAGWAPGQLAMECKRGVWFTAAASPKLLLKEVEHGQGPSY--WHEVMTLLGGDYAELSK 291
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A7S2MI87_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MI87_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.100e-26
Identity = 71/215 (33.02%), Postives = 109/215 (50.70%), Query Frame = 1 
Query:  382 LITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRL-----RSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPF------HPLWSKLLRLMGGKYQEVA 993
            ++    E I KD W     AH IG +E GC+L+A E++  G FHQ+V+L++ H   +GT G+++NRP    L      +   +   L   F  S V  GGP+     ++LH          +  G++ GG   LVD  R+      D + FV GH+AW  GQLQ E+    W+ A+ + + I  +  KP         LW++LL  MGG+++E+A
Sbjct:  201 MLRPTNELINKDHW-----AHPIGHIEPGCVLVANEKL-GGVFHQTVVLIIEHHEKKGTTGIVINRPLRGNLFKVAQETTSNVDVSLRLAFTSSPVSYGGPVMPEEYSILHTHGYIKDSVRVAPGIYVGGSRELVDEVRRNELDPSDAL-FVKGHAAWVAGQLQREISKGVWYTASCSEDFILRYV-KPHDNSIRGEDLWTELLTTMGGRFEEIA 407
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A8J9SJ92_9CHLO (Probable UPF0301 protein BDI_1431 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SJ92_9CHLO)

HSP 1 Score: 112 bits (279), Expect = 1.980e-24
Identity = 82/259 (31.66%), Postives = 119/259 (45.95%), Query Frame = 1 
Query:  328 DDLLSEVKGRDWRLFRKNLITR-------------YGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGT---FHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEH--CDKPF--HPLWSKLLRLMGGKYQEVAKRN----EPRL*DHPPP 1032
            D L +     DWR FR  LI               +GE   +   +   WAH I   E GCLLIA   + +     F QSVI +  H+ +QG+ GLILN+P    + ++ GL+  L   F D+ +F GG +   +M +LH          +  G++ GGFD       Q+G    D   F   +S W PGQLQ E     WF AAA+  L+ +    DK      +W ++L L+GG   E++K      +P +  +P P
Sbjct:   34 DSLPATAADTDWREFRARLIASQAASTSGRSEEQGFGEKSDEADQAAKLWAHTIPLPEKGCLLIAHPLMFTSQQLYFAQSVIFLFEHS-EQGSAGLILNKPTQYTIGTMSGLEA-LCPEFSDNGLFLGGDVSPNSMHMLHCHGELPEAVEIIRGIYMGGFDAAKAAVNQKGMPPTDFKWFTR-YSGWGPGQLQRECASGVWFTAAASSALVLQQGCADKADSGREMWHQVLNLIGGDLAELSKAQRGAFDPEIMGNPAP 289
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S7_ECTSI3.880e-21395.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNM8_9STRA1.540e-5844.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y026_9STRA2.730e-5341.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z6U1_9STRA1.010e-4036.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R7QN66_CHOCR1.520e-3438.10Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1Y1HP74_KLENI7.140e-2932.81Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S1BIP2_9STRA7.310e-2935.75Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A835WJ62_9CHLO3.520e-2735.00Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A7S2MI87_9STRA6.100e-2633.02Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A8J9SJ92_9CHLO1.980e-2431.66Probable UPF0301 protein BDI_1431 n=1 Tax=Coccomyx... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:416371..424060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score599.0
Seed ortholog evalue1.4e-168
Seed eggNOG ortholog2880.D7G0S7
Model size1227
KEGG koko:K07735
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.Uncharacterized ACR, COG1678
EggNOG OGs2QRDU@2759,COG1678@1
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-23_001700.1
Cds size1017
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.917.1prot_Ecto-sp6_S_contig103.917.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 416581..424060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348742.968139-UTR-Ecto-sp6_S_contig103:416370..4165801682348742.968139-UTR-Ecto-sp6_S_contig103:416370..416580Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 416371..416580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348742.979879-CDS-Ecto-sp6_S_contig103:416580..4166431682348742.979879-CDS-Ecto-sp6_S_contig103:416580..416643Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 416581..416643 -
1682348742.9895923-CDS-Ecto-sp6_S_contig103:417503..4175781682348742.9895923-CDS-Ecto-sp6_S_contig103:417503..417578Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 417504..417578 -
1682348742.9998639-CDS-Ecto-sp6_S_contig103:418421..4185141682348742.9998639-CDS-Ecto-sp6_S_contig103:418421..418514Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 418422..418514 -
1682348743.0092032-CDS-Ecto-sp6_S_contig103:419425..4195601682348743.0092032-CDS-Ecto-sp6_S_contig103:419425..419560Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 419426..419560 -
1682348743.0184717-CDS-Ecto-sp6_S_contig103:420220..4204061682348743.0184717-CDS-Ecto-sp6_S_contig103:420220..420406Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 420221..420406 -
1682348743.0289638-CDS-Ecto-sp6_S_contig103:421486..4216151682348743.0289638-CDS-Ecto-sp6_S_contig103:421486..421615Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 421487..421615 -
1682348743.0406442-CDS-Ecto-sp6_S_contig103:423724..4240601682348743.0406442-CDS-Ecto-sp6_S_contig103:423724..424060Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 423725..424060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.917.1

>prot_Ecto-sp6_S_contig103.917.1 ID=prot_Ecto-sp6_S_contig103.917.1|Name=mRNA_Ecto-sp6_S_contig103.917.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=339bp
MQRAPAAAAAAAAGISRRRTPPGSGWMLLSLVITAGAVLGVVESFLPPAA
LQCHPSVPFGTAAAARLGRNKGLPVLAASSRDGGSGGGVEDQGRRWGEMD
RGGGGGDADDDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDI
GTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLR
SLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFA
GGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAA
PELITEHCDKPFHPLWSKLLRLMGGKYQEVAKRNEPRL*
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mRNA from alignment at Ecto-sp6_S_contig103:416371..424060-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.917.1 ID=mRNA_Ecto-sp6_S_contig103.917.1|Name=mRNA_Ecto-sp6_S_contig103.917.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7690bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:416371..424060- (Ectocarpus species6 EcLAC_371)
ATGCAAAGAGCACCAGCTGCAGCTGCCGCTGCTGCTGCCGGGATATCGCG
CCGACGGACCCCGCCGGGGAGCGGTTGGATGCTGCTGTCCCTCGTGATCA
CGGCAGGGGCGGTGCTAGGCGTGGTGGAATCCTTCCTCCCTCCCGCAGCT
CTCCAGTGTCACCCGTCGGTTCCCTTCGGTACGGCCGCCGCGGCAAGGCT
GGGTAGGAACAAAGGGCTGCCGGTGCTAGCGGCATCATCGCGGGACGGGG
GCAGCGGCGGCGGCGTTGAGGACCAGGGCCGGCGGTGGGGGGAGATGGAC
CGCGGGGGCGGGGGCGGTGATGCTGACGATGACCTGGTGAGCAGTACGTT
CTACAATCCCTCAGCCTCAGGCGCATGCCACCACTCTGTCTGCTGCTGCC
TTGAGAAAAAAGTGTGAAGGGTACAGCGTTTGCCGAGAGGTTGAAGTGCT
ATTCCGGGATTCAATTTTGCCTGCTGTGCATGCGAGAGACCCATCGGGAC
ACGACATGCTGTAACCATGTTAGACCTTAGACTGCCCCCCTTGGGAGCGT
GAGCGTTCCCTGCCGAGCGGTCAATATAGAGCGGGCTGAAGCTTGTCGTT
TCGCGACCCGTTTCACTGGAGATTTCACCCAGGACGTTTCCCGAACTGCT
GCCACATCTTAGATCCGGTCGGCAAATCATTTGTGTTGTAGAGGGCTTTT
TTCGGCGACGGCGGCATGTGTCTCATCTAATTTACCTACATGTAGAGCTC
GCTCTATTTGTTCTAGCTTGTGTGGGCGGCGAGTTGCGACTGGGAGCTCC
ACGGAACGCCCTCCCTCTCTCTGTATCTCTCAAATATATTTTTATTTCGG
TTCGTATCATTTATGCGCGATTTTTTGCTCCAGTTTCAGCCGACCCCAAT
ATGTACGGAACGGAAGATGGTGCTGTATGCGGATACTAATTACCCATTTA
GCTCTGGCAGGGGAAACACAGCTACATGTTCAAAAACCATTCGGTACAAA
TAGCAACAGAGAGGTCCCCCGCCCGCAGACCGGTCTGCTGTATAGCACGC
GGCGCGGCTCGGTTCCTGTAAGGGTCTGCACGGCGCCACCACGATGTACT
GCTGTAATTAATATATACCCTGAGAGCCAACAAGTTCTGCTCAATACAAC
ATCGAAACTACCGCCGTTTATACTGCTGTGGAAGTTGGCCGTAGCGACAG
GTGCACATGTTCGTATGTACATGTATAAGATTTGGTAACTTTCATTCTTC
GGCGTTTCTTTCTCTCGCGGCAGCGAGTCTTTTTTCGCGGTTCCTTCTCA
GGGGCACGCAGGAGGCTCGTCGGGACATTAACGCCCGCGCCCGGAGCTCG
GTAGGCCTCCGTGGCGCGTGTGGTTGACGGCCAAAGTTGCGAAAACTGGC
TCAAAACCCCGGGGTCGCGTTCCGCGATGACAAAGTCTGGCGAACCAATT
CTGAAACCGAACAAACCTATCAAACAGGACGGTTTGAAATATTTAATATT
TGCCTCTTGCTTCTCCACTTTCATTCGTTCATTCATTCATTCGATGATTC
ATGGCTGTGACTCTTCGTGTCATCGCATTGTCCAACAGCAGTACCTACGT
TTACAACACTTCGCAACAGGCCAAGTGTAGACAAGTCTGCGAGCATGCAT
CCAGCCGCAGTGTTGAACATGTCCAATTTGTGGTGTTGTTTCGGCTTCAA
ATTCAGTTCTCATCGGAAATCTGCCATTATCAATCAAAGACATCATGGAA
GTCTGAGTTTCGCTGCCAAAATATTGTCCGCTCGAGCAGACTCCAATGTA
GAATAACAACGTGCGCGCTGTTTTGTGCGGAAATACAAGCGTTGTAAGAC
GCACAGTCCCTCTTCGGGCAACGTGCATGCGGTCTTGCGTAACCTGAGGT
AGGGTAGACACCCACGTCCCGAAGCCCGAAGGGAGACCTGGTATTCCCGT
ACACTATTATAACCTATTCGAAGTACAGAGTTGCTGTTGGGTGAACCCCC
ACGGAGGAAGGAGCCTTAGCCAAAATGAGAGGCTCTAATGTGGCACCGGT
ACAGGATGTCAAGCAGGCGTGTCTTGAACCCTTCCCAGCGAAGAAGACAA
ATTGACGCCTAGACTAACGTGTGGGGGGGTTACGCATGAAGCGCCTGAGC
CCGGAGAGGCAAGTCACGAGGGAGGACTGCAGCTTTAACCCTTCGGACAC
TTGGGCAGTGTTCCAGAGCCCGCCTGATGTACATCCCCCTCTCTCTCTCT
CTCTCTCTCTCTCTCCCTCCCCCTCTCTGTCGACGAGCCCTAAGAGAGAG
CGAGAGGGAGAAACAAAAAATGTTGTTCGTTTTGCATTCCACGTCGATTT
CGGTTTTCTCAAACGCCTCTCCCCGTGTTCCTAGACCCACCTACCCTCCT
CTGCCGTCGATGACGCTTGCGGACGAAACGTTACCGTTTCGCCAGCTGTC
CGAAGTCAAGGGCCGGGACTGGCGATTGTTCCGCAAGAACCTCATCACCC
GGTACGGGGAAGACATCGGCAAGGACCCGTGGAGCGACGGGTGCTGGGCG
CATGACATCGGGACGGTGGAGGCGGTGAGTGGGGGTTAGCTACATACGTA
CCTCGTGAAGAAGTTGTTCTGATGCTACGTCAACCCCCCCCCCCCCGATC
GTGCTCGATTTCCAGGTGGATGCTCAGCATGTTTTTGTACGTGCGGTAGA
GAGGTTCGTAGACAAGAAGTTGCGGGCTACGCACAAGAGTTCGGAGAACC
CTTGAGGGTTGTCGGGAGACAGACGAGGGAAATCGATGGGCTAGATACAG
CTCAAGGCGAGCCGCCTCCTATCCTCGGTCTCCCGTTCCTGCCGACGCGG
GGTAGGGCTGCCGAGTGTATGCAGTCAGTCAACCCCATCCTTCTCAAGCA
TTCTGTACCCCTTCCGAGCCCGATATATCTAGTAAAGATGGGTGTTTCCT
TCGTCCCCAACTTTGCTGACCCCCTCTCTGCTGATCCAGTCTGCTGAGCC
CCTCTACCGACCCCTGCCCTTCGTTGCGGGTCCGTTTTTGTACGGACAGG
GACGCTGCAGTACGTGACAGACCGCTGACCCCCTATCGTGGAGTTTTTTC
TTGGTGTCCGTATGCAGTGGTGTGGCTACTGTTTAAGAGAGGGTCGCAAC
GAACCAGTATTTCAATTGTAAAAATCGAAGGCAAAGTACCGCAGGAGGAC
GGGGGGGTAGGGGGCCTCATGGAGAGAAACCCTTTTGTGTGACCACGGCT
TGGAGTAAACGGCAACAAGTGCTGTGAGCTCTGATTTGAAGTGAAGACAG
AAAAAAAAAACTCCGTGAAACCGTAGCCACCACCACTGTTGTAACGAGTT
CCTGTTGCCTACCGTAGGTTGCATAAGATATCACACCCCCTGGACCGATT
TTCAAAGCTCCATTACTCCACGGCGAAGAGGATGCCGAAACCAAAGGATA
CGTTTTCGGAAAGTTCTCGACGACACGGTTCTAACGCCACCATTTTCGGG
ACCGTCAGTGCTCTTCTTCCTGCCGAGAGTTCGAGCTTTCGAAAATCGGT
CCAGGGGGTGTGTGATATCTTACGTCATGTCACCTACGGTACAACCCCAA
CGCTGACCCTTTTCCTAACCCCCTCCCCGTGGTTCCCCACCCATTATTAT
CCAGGGCTGTCTGCTGATCGCCACGGAGGAGATCGACAGTGGAACGTTCC
ACCAGTCCGTCATCCTCGTCCTCAGTCACGCGAGAGACCAGGGCACCCTG
GGCTTGATCCTCAACCGCCCGGGGCCGCAGCGGCTCCGCTCGCTGCCTGG
CCTGCAACCGGACCTCGCGGAAGTCTTCGGAGATTCGCAGGTGGGAAACG
GAGAGTAAGCACAGGCTTAGTTTCCAGCCGCGTTTTTATTTGCTGTGGGG
GCGAGCACGATCATTTTTTTTGCCGACCGTGTTGTTTGTGGTGGGAGCGT
GGGCCGCCTCTCTTCCACCCGTGCTTGTTTGTTGTGGAAGCAAGCATGAA
TATTTTTTTAGCCTTAAATGTTTGTTGTGGTTGGTTGCAATGGGATCCCT
AGCTTGTGTGCTGCGCCCACGCGCGTGGGTAAGCACCAGCACGAATAGCT
GCATGTAGCGGAGAGGCTGTGAGGGTGCCCCATGTTCGAGCTCGCTACAT
CAGTAGGAGGGCAAAAAATGTCACATTGTTGTCGTAGAAGGTGCAACTGA
ACATCCCGACTCGGTGCGTTCTGTAATATGTTGGAGGTTCGTTTGGGTCA
ACGCGCGTGTACTTTTTGTCACTGGTTTTGGCTCCCTCCTTCCATCGTGT
TGTTGTTGTTGTTTTGTTGTTGTTTTGTTGTTGTTGTCTTCACATCAAAA
ACCGTTCCATGTTGTATCGGCGTATTTTGAGTCTAGTCATGCCTGCACAC
AGAATGAAGTATAAGAGTACTGCCGGCTGGTGCTAATAGTAATAGACGTT
CTACGAGACGACTTTTTTACACCTTGTTTTGGTTGTTGTTGTGCTATCAG
GTTTTTGACGGCGGACCCATGGGTCTCGGCACAATGACCGTGCTGCACAA
CACGAACGTGGAGGGGAGCGACCCCGTACTGGACGGAGGCGTTTTTGCAG
GGGGGTTCGATACCCTGGTCGACGTCACTCGCCAGGTTGGTTCTTCTTTT
TCTTTTTTTCTTCTCACGAAAAGGAAACTATCACTTCATTGCTAACCGAT
ACCCCGTACTCGCCATGTGTGGAAGAGATGAATTTTTGTTGCGTTGTTTC
AAGAAAAAGTTTTGTATCTTCTTGTTATCTACGGATGGATATAGTTAGCT
AATATCCACGGCCGTGTTGGCTGACCATCCTGCTCGTTGTATGTTTCTTT
ACCTGCCGGCCCGGTCTCTTTTTGTCACGGCCGACATCGGTTGCGCGTAA
CCTCCTCCCCAACGGTACAGTGAATAGCTATCGACACAACTACTACCGTA
GGTGACGTAAGATATCACACCCCTACTGGGCCGATTTTCATAGCTCGATC
ACCCACGACGAAGAGGATGCATGAACCAAACGATATATATGGTCAGAAGG
CTCTCAACAGAACGGTTCCAATGCCGCCATTTATAGCACCACTGTTGGTT
TTGCTTGTGGAGTAATCGAGCCTTGAAAGTCGATCCTGGGGGGGGTGATA
TCTTACGTCATGTCACCTACGGTAATCCGTGTTCCGTACCGCGAACACCG
TTGTCATGGTCGTCTCATTGAGTCGTTCAGTAATTGGTGACGCTGGCCTC
TACCTGGAGTTGGTGTGCAAGAGTACTGGCGTCAAGTCTTGCCGCAAAGA
TCGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGTTGT
TGTTGTCATTGGTGATGTGTTGTTGATCATTGTGATGCTCGGTCGGACTC
GCAACGATTTTGCTCTAATCTCCTCTGCGATCATGGTCCCTCCGGAGCAG
CCATGGAGACCTCCCTGTAGCTTCCATCGAAACACTTACGCACCCCTCCA
TTCCATACCATAAATCTGTGGTGCCCCCCGACGGTACCCCCTTGAGCAGG
GGAGGGTGTCTAAAGACCGAGTTCGATTCGTGCACGGGCATTCCGCCTGG
TCGCCGGGGCAGCTGCAGGGAGAGCTGGACCACAATCAGGTGTGTGCACT
TGTGTGTGCGCTTTGCGTTTGGTTGCTGGGCTTTGGTTTGGGTCGTTCTT
GCGACTGACCGCCATGGCCGTTGGTTGTAGTGGTGCGACGGGCGGGGGGC
GTCATCTGGTACCGGGGACTTTTTACTTGTTCAGATATCTTAAAAAAAAA
TTGTGAGATACTAGTTCATACCACCAGTTGCCACAGCACTGCGAAACTTG
GATTCGTTGCTTATTAAAGCACACAACAGAAATATCGTTGCTTGAGTGAA
GGACAAGGCTGTCGGTGCTTCATCTAGTTCTGTGTTGTACAGGTACACGT
GCTGGTCACGGAGAAAGCCCCATGCAATGTTGGTTGTCGTCTTGCACAGT
GGTTGCCTCTAGGTCGTATCGGGAGGCGTCGTTTGCTGCGAAGCAGCGTT
GGGCGGGCGTTGTGGTGTTGAGTGCTAGGTTTGCTCCCAGCATCGAAAGC
CGCGCTGAAAATCTGTTGCGGCAAAAGTCGAACTTTGCGAAAGGTCGGCC
TTCACGAAAGGACCCTGGGACTTCAGGCATTTTTCCTCTTTTTCTTACAA
TTACAAGAACCGAGAGAGCTTGTCGCTATCCACAGGCAACCGTCCTGGAT
GAAGAGTGTTGCTGTTTTCGCTCATGCTGTCTGTGCTTCTGCTCCATGTT
TTTCGATTTTCGTGGTCTTTGTGTACCACCGGTTTGGACGGTATTTTTTT
TCTTTTTTTAGGACTGGTGGCTTCTGTTGGTTGGACTTTTTCATCCTCGT
TGTTTCAGGGTTGCCGTTTTATGTTCGTATTTGTTTTCTTTCTTTGTTTC
CGCTTTTTTTGCCGCTTTCTTGTGCGTGACAGTGGTTCGTGGCCGCGGCG
GCACCGGAGCTGATCACCGAGCACTGCGATAAGCCCTTCCACCCGCTCTG
GAGCAAGGTGACAAGCTTTTTCTCGTTGTTTTTATGCGTCTGGGCTATAT
AGCGAGGGTTGACGTATTTTTTTTCCTGTACCCCCCCCCCCCCCCCCCCC
CTGCTCCGTCTCGAAAGGGACGCGTGGTCAATGGTCAAATGACTACGGCA
AGCAACAAATGAGTACGCCCCCATGGTCATGATCAATGGTCCAGCCGCTA
CGGCATGCAAAATATGACTACCCCCTCAGCACCACCCACCACCATCACCC
GAGCTAGGCGTTCGTTTTTGTGGTGCGTGTGTGTTGTGCCGCAAGGACGT
GGAAGAATCATGAGCATGGCTTTAGATAGGGTAGTTCCCGAACGACAGGA
ACCCCACCTAGTTATATCTAGCGTCAGATGTCCTTTTGCTGAGTCCTGAC
GAGAGGAGATGAACGAGGTCGTGCTCGGTTCGTCGGACGTTTCCTACTTA
TGGCCTTTAATCGCTGTCACCGTCCTAGTCTTGGTTTCTGCGGCAGTGAT
TGCGTGTCTTGCCCAGAACCAACTTTTTACGAATCCAATTTTGTAGAGCA
TGCACACGCACATTTCGTTTTGGCGTCATCACGTGTCTTGCTCAGAACCA
ACTTGTTTTACAAATAAAACTAAATAAACGCACCCGTTCAATTTGGGGTT
CGTATTCAGCGCATTGCGCTGCGCGTTGTTGGTCCGAATTCTGGTCCCCC
CTGGGGTTACCCCGCCGGCACCGACGTCTTCTCATTGGTCAGCCGGTTAT
GGCGGTCGATGCTAATTACTACTTATTTCAAGACACACACAGCAGCAGAA
TGATGCCATACATTTTTCTTGTTCCGTCTCTCGGTCGTGCCTCCCTTCCG
GTCCTCCCTCCGTTCAGTTGCTTCGCCTGATGGGGGGCAAGTACCAAGAG
GTGGCCAAGCGGAACGAGCCTAGGCTGTGAGATCATCCACCACCGTACCA
TAACGGAAGAACAAACACGAGCACGCTGTGGGTGGTGGTATCCATCTGCG
GGAAGTTTTGGCGCGGCAAGTCGTGGCGGCAGCGATCGCACAAGATGCCG
GAATGGGCGGGGAGCTAGCGCAGCGACGCGCGGAAGCCTTTTCTAGTGAT
TTTTTTCACGACGTCAAAGGCGGCTTTGGCGTGTTCACGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:416371..424060-

>mRNA_Ecto-sp6_S_contig103.917.1 ID=mRNA_Ecto-sp6_S_contig103.917.1|Name=mRNA_Ecto-sp6_S_contig103.917.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1017bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:416371..424060- (Ectocarpus species6 EcLAC_371)
ATGCAAAGAGCACCAGCTGCAGCTGCCGCTGCTGCTGCCGGGATATCGCG
CCGACGGACCCCGCCGGGGAGCGGTTGGATGCTGCTGTCCCTCGTGATCA
CGGCAGGGGCGGTGCTAGGCGTGGTGGAATCCTTCCTCCCTCCCGCAGCT
CTCCAGTGTCACCCGTCGGTTCCCTTCGGTACGGCCGCCGCGGCAAGGCT
GGGTAGGAACAAAGGGCTGCCGGTGCTAGCGGCATCATCGCGGGACGGGG
GCAGCGGCGGCGGCGTTGAGGACCAGGGCCGGCGGTGGGGGGAGATGGAC
CGCGGGGGCGGGGGCGGTGATGCTGACGATGACCTGCTGTCCGAAGTCAA
GGGCCGGGACTGGCGATTGTTCCGCAAGAACCTCATCACCCGGTACGGGG
AAGACATCGGCAAGGACCCGTGGAGCGACGGGTGCTGGGCGCATGACATC
GGGACGGTGGAGGCGGGCTGTCTGCTGATCGCCACGGAGGAGATCGACAG
TGGAACGTTCCACCAGTCCGTCATCCTCGTCCTCAGTCACGCGAGAGACC
AGGGCACCCTGGGCTTGATCCTCAACCGCCCGGGGCCGCAGCGGCTCCGC
TCGCTGCCTGGCCTGCAACCGGACCTCGCGGAAGTCTTCGGAGATTCGCA
GGTTTTTGACGGCGGACCCATGGGTCTCGGCACAATGACCGTGCTGCACA
ACACGAACGTGGAGGGGAGCGACCCCGTACTGGACGGAGGCGTTTTTGCA
GGGGGGTTCGATACCCTGGTCGACGTCACTCGCCAGCAGGGGAGGGTGTC
TAAAGACCGAGTTCGATTCGTGCACGGGCATTCCGCCTGGTCGCCGGGGC
AGCTGCAGGGAGAGCTGGACCACAATCAGTGGTTCGTGGCCGCGGCGGCA
CCGGAGCTGATCACCGAGCACTGCGATAAGCCCTTCCACCCGCTCTGGAG
CAAGTTGCTTCGCCTGATGGGGGGCAAGTACCAAGAGGTGGCCAAGCGGA
ACGAGCCTAGGCTGTGA
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