mRNA_Ecto-sp6_S_contig103.917.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI) HSP 1 Score: 596 bits (1536), Expect = 3.880e-213 Identity = 298/312 (95.51%), Postives = 300/312 (96.15%), Query Frame = 1 Query: 79 MLLSLVITAGAVLGVVESFLPPAALQCHPSVPFGTAAAARLGRNKGLPVLAASSRDGGSGGGVEDQGRRWGEMDRGGXXXDADDDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWSKLLRLMGGKYQEVAKRNEPRL 1014
MLLSLVITAGA LGVVESFLPPAALQCHPSVPFGTAAAARLGRNKGLPV AASSRDGGSGGGVEDQGRRW EMD XXX DDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLH+ NVEGSDPVLDGGVFAGGFDTLVDVTRQ G VSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLW+KLLRLMGGKYQEVAKRNEPRL
Sbjct: 1 MLLSLVITAGAALGVVESFLPPAALQCHPSVPFGTAAAARLGRNKGLPVPAASSRDGGSGGGVEDQGRRWEEMDXXXXXXXXXDDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHDANVEGSDPVLDGGVFAGGFDTLVDVTRQ-GTVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWTKLLRLMGGKYQEVAKRNEPRL 311
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A836CNM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM8_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.540e-58 Identity = 106/239 (44.35%), Postives = 140/239 (58.58%), Query Frame = 1 Query: 319 DADDDLLSEVKGRDWRLFRKNLITRYGED---------IGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHP--LWSKLLRLMGGKYQEVAKRN 1002
D + D++ +VK DWR FR NL+ R E+ + W D WAH+IG VE GC+L+A E + G FHQ+ +LVL H + GTLGLILNRP +R+ +PGL D+ FG V GGP+G G MT LH + G++ GGF+ LV + Q+GRV +R HGH+AW PGQL EL + W++AAAAP L+T P +W +LL LMGG Y EVA+RN
Sbjct: 43 DEELDVIPDVKQLDWRAFRANLVRRSREEGFGGSSAXXXARRKWRDDAWAHEIGVVEKGCVLLAHETLQ-GVFHQTAVLVLDHDDNAGTLGLILNRPTKRRIAGVPGLGRDMQAAFGQCAVHYGGPVGAGGMTALHGVKQARGGQEIAPGLYVGGFEDLVRLA-QEGRVDGSSLRLAHGHAAWGPGQLSRELRADFWYLAAAAPALVTGAGAAGRAPSRMWHQLLDLMGGSYAEVARRN 279
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A7S2Y026_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y026_9STRA) HSP 1 Score: 188 bits (477), Expect = 2.730e-53 Identity = 94/229 (41.05%), Postives = 146/229 (63.76%), Query Frame = 1 Query: 322 ADDDLLSEVKGRDWRLFRKNLITRY-GEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTN-VEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWSKLLRLMGGKYQEVAKRN 1002
D + +++V DWR FR L+ +Y G++ ++ W++ WAHDIG +E GCLL+A++ +D TF QSVILVL+H D GT G++LNRP + ++ + P L E FG++ ++ GGPMGL + V+H VEG+ + G ++ GG L + +QG++ +VRF GH+AW+PGQL+ E++ W+ A +PEL+ C PLW ++L LMGG+Y E+ K+N
Sbjct: 58 GDSETINDVGNVDWRDFRAKLVAQYSGKE--RENWTEDRWAHDIGQIENGCLLLASDVMDDDTFWQSVILVLNHDPDNGTFGIVLNRPTGAHVCNVRDIVPALREAFGEAPLYLGGPMGLDEVNVVHAVEGVEGAIEIRKG-LYHGGVAGLQE-RAEQGQLDLAKVRFEAGHAAWNPGQLEQEIEKGWWYPAVCSPELVVRPCIGLPVPLWCQILDLMGGEYAEIGKKN 282
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A835Z6U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U1_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.010e-40 Identity = 96/266 (36.09%), Postives = 129/266 (48.50%), Query Frame = 1 Query: 295 MDRGGXXXDADDDLLSEVKGRDWRLFRKNLITRYGEDIGKDP---WSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTR-----------------------------------QQGRVSKDRVRFVHGHSAWSPGQ---------------------LQGELDHNQWFVAAAAPELIT 915
M GG +D D + +VK +DWR FR NL+ R E+ P WS G WAHDIG VE GC+L+A E ++ G F+Q+V+L+L H +GTLGLI+NRP +R+ +PGL D+ FGD V GGP+G G MT LH+ + V+ GG + LV + + Q+G +R GH+AW PGQ L+ EL N W+VA+AAPELIT
Sbjct: 45 MSSGGGADPSDLDTIPDVKSKDWRAFRANLVRRSAEEGFGAPHRGWSGGKWAHDIGCVEKGCVLLAHESLE-GVFYQTVVLILDHDDTRGTLGLIINRPTKKRIAGVPGLGRDVQRAFGDCPVLYGGPVGAGGMTALHSAGEAKGCQEVAPSVYVGGLEGLVRLAQEATPWSVVRRIAALLWRRLVNLGGKGRALRSGGVAQRGHAHGSTLRLAVGHAAWVPGQEKETASNTQAPAPLGAERLRHLKRELRANFWYVASAAPELIT 309
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: R7QN66_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN66_CHOCR) HSP 1 Score: 138 bits (348), Expect = 1.520e-34 Identity = 88/231 (38.10%), Postives = 125/231 (54.11%), Query Frame = 1 Query: 358 DWRLFRKNLI------TRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGT-----FHQSVILVLSHARDQGTLGLILNRP-----GPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHN-TNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWSKLLRLMGGKYQEVAKR 999
DWR FR L+ T GE K+ WAH++ VEAGCLLIA+ E G F SV+LVL+H D+GT+G+ILNRP RLR P + ++ GGP+ L ++ LHN ++ G+ V+DG +G + L + R G+++ D RF G+S WSPGQLQ E+D W+ A+ EL+TE L KLL+LMGG++ ++ +R
Sbjct: 42 DWRSFRARLVQTEQTTTPAGEPSTKE------WAHEVPFVEAGCLLIASPEHFVGEHSCSFFANSVVLVLTHHSDKGTVGVILNRPVAAAVSEPRLRGAVSAAP--------APLYLGGPVALDSLLALHNDASIPGAGQVVDGVATSGVAEVLSRIER--GQMNVDSCRFFCGYSGWSPGQLQEEVDSGVWYTCASCTELVTEKGLHRDDYLTKKLLKLMGGRFTQIGER 256
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A1Y1HP74_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HP74_KLENI) HSP 1 Score: 125 bits (313), Expect = 7.140e-29 Identity = 83/253 (32.81%), Postives = 132/253 (52.17%), Query Frame = 1 Query: 319 DADDDLLSEVKGRDWRLFRKNLITRYG---------EDIGKDPWSD---------GCWAHDIGTVEAGCLLIATEEI---DSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSL----PGLQPDLAEVFGDSQVFDGGPMGLGTMTVLH-NTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWSKLLRLMGGKYQEVAKR 999
D D +E+ DWR FR L+ R E + D D G WAH + E G L+IA + F+ +VIL+L H ++G++G+ILN+P L +L L P+LA +++ GG +G G VLH +++++G+ V++G V+ GGF+ + + R G+ D R+ H ++ W PGQL+ E+ WF+ + + +L+ H + PLW ++L+LMGG Y EVAKR
Sbjct: 91 DDDSPTAAEI---DWREFRARLVARSAAEAAERAREEQLESDAAEDRAVPEIQPGGSWAHPLVLPEVGALVIAKPGYFNQNQQYFNHAVILLLHHG-EEGSMGIILNKPTEHTLGTLFEGIDTLSPELAS----GRLYLGGDVGHGATHVLHRHSDLDGTRKVVEG-VYTGGFEAIGEHIRA-GKSECDDYRWFHMYAGWGPGQLENEVKAGVWFLGSCSRDLLLTHSEDLKTPLWDEVLQLMGGTYAEVAKR 333
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A7S1BIP2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIP2_9STRA) HSP 1 Score: 127 bits (319), Expect = 7.310e-29 Identity = 74/207 (35.75%), Postives = 112/207 (54.11%), Query Frame = 1 Query: 421 WSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQ-----PD-LAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHP-------LWSKLLRLMGGKYQEVAKRN 1002
+++ WAH + VE GCLL+A+E++ G FHQ+V+L++SH + G++G+++NRP ++++ L G PD + F +S V GGP+ +LH N+ L GVF GG L R G R V GH+AW PGQLQ E+ W +AAA+ +LI + P LWS++L M G Y+++A N
Sbjct: 250 FNENRWAHPLSHVEKGCLLLASEKL-GGIFHQTVVLIISHNDNLGSMGVVINRPLGKKIKELSGPARKSTIPDAMRSSFAESTVTYGGPVQTDHYAILHGYNLAEGAVELTKGVFVGGHTDLERDVRS-GCFLPMRALLVKGHAAWVPGQLQREISKGVWHIAAASSDLILRYAGAKEDPETEFPDNLWSEILSAMDGDYKKIALAN 454
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A835WJ62_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WJ62_9CHLO) HSP 1 Score: 119 bits (299), Expect = 3.520e-27 Identity = 77/220 (35.00%), Postives = 118/220 (53.64%), Query Frame = 1 Query: 358 DWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGT---FHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLH-NTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELI---TEHCDKPFHPLWSKLLRLMGGKYQEVAK 996
DWR FR L+++ G S WAH I E G LL+A + + FH++ IL+L H D G+ G+ILNRP +R +P +P F D +++ GG +G G + VLH +++++G+ V+ G V+ GG D D GR R+ ++ W+PGQL E WF AAA+P+L+ EH P + W +++ L+GG Y E++K
Sbjct: 80 DWREFRAKLVSQ-SRGQGTASTSADEWAHIIPKPEKGALLLAHPLLFQNSQTYFHRAAILLLEHG-DNGSYGVILNRPSTYFIRDIPLKRPQTQ--FNDCRLYIGGDVGGGEVQVLHPHSDLQGAVEVVKG-VYMGGLDAGRDAI-DAGRAKAQDFRWFSAYAGWAPGQLAMECKRGVWFTAAASPKLLLKEVEHGQGPSY--WHEVMTLLGGDYAELSK 291
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A7S2MI87_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MI87_9STRA) HSP 1 Score: 118 bits (296), Expect = 6.100e-26 Identity = 71/215 (33.02%), Postives = 109/215 (50.70%), Query Frame = 1 Query: 382 LITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRL-----RSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPF------HPLWSKLLRLMGGKYQEVA 993
++ E I KD W AH IG +E GC+L+A E++ G FHQ+V+L++ H +GT G+++NRP L + + L F S V GGP+ ++LH + G++ GG LVD R+ D + FV GH+AW GQLQ E+ W+ A+ + + I + KP LW++LL MGG+++E+A
Sbjct: 201 MLRPTNELINKDHW-----AHPIGHIEPGCVLVANEKL-GGVFHQTVVLIIEHHEKKGTTGIVINRPLRGNLFKVAQETTSNVDVSLRLAFTSSPVSYGGPVMPEEYSILHTHGYIKDSVRVAPGIYVGGSRELVDEVRRNELDPSDAL-FVKGHAAWVAGQLQREISKGVWYTASCSEDFILRYV-KPHDNSIRGEDLWTELLTTMGGRFEEIA 407
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Match: A0A8J9SJ92_9CHLO (Probable UPF0301 protein BDI_1431 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SJ92_9CHLO) HSP 1 Score: 112 bits (279), Expect = 1.980e-24 Identity = 82/259 (31.66%), Postives = 119/259 (45.95%), Query Frame = 1 Query: 328 DDLLSEVKGRDWRLFRKNLITR-------------YGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGT---FHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHNTNVEGSDPVLDGGVFAGGFDTLVDVTRQQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEH--CDKPF--HPLWSKLLRLMGGKYQEVAKRN----EPRL*DHPPP 1032
D L + DWR FR LI +GE + + WAH I E GCLLIA + + F QSVI + H+ +QG+ GLILN+P + ++ GL+ L F D+ +F GG + +M +LH + G++ GGFD Q+G D F +S W PGQLQ E WF AAA+ L+ + DK +W ++L L+GG E++K +P + +P P
Sbjct: 34 DSLPATAADTDWREFRARLIASQAASTSGRSEEQGFGEKSDEADQAAKLWAHTIPLPEKGCLLIAHPLMFTSQQLYFAQSVIFLFEHS-EQGSAGLILNKPTQYTIGTMSGLEA-LCPEFSDNGLFLGGDVSPNSMHMLHCHGELPEAVEIIRGIYMGGFDAAKAAVNQKGMPPTDFKWFTR-YSGWGPGQLQRECASGVWFTAAASSALVLQQGCADKADSGREMWHQVLNLIGGDLAELSKAQRGAFDPEIMGNPAP 289 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.917.1 >prot_Ecto-sp6_S_contig103.917.1 ID=prot_Ecto-sp6_S_contig103.917.1|Name=mRNA_Ecto-sp6_S_contig103.917.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=339bp MQRAPAAAAAAAAGISRRRTPPGSGWMLLSLVITAGAVLGVVESFLPPAAback to top mRNA from alignment at Ecto-sp6_S_contig103:416371..424060- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.917.1 ID=mRNA_Ecto-sp6_S_contig103.917.1|Name=mRNA_Ecto-sp6_S_contig103.917.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7690bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:416371..424060- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:416371..424060- >mRNA_Ecto-sp6_S_contig103.917.1 ID=mRNA_Ecto-sp6_S_contig103.917.1|Name=mRNA_Ecto-sp6_S_contig103.917.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1017bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:416371..424060- (Ectocarpus species6 EcLAC_371)back to top |