mRNA_Ecto-sp6_S_contig103.912.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.912.1
Unique NamemRNA_Ecto-sp6_S_contig103.912.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: D7G0T3_ECTSI (Retinoblastoma binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 2.240e-127
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 1
Query:    1 RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE 564
            RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPF+AAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE
Sbjct:  206 RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFLAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE 393          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A6H5KX51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX51_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.680e-107
Identity = 166/188 (88.30%), Postives = 169/188 (89.89%), Query Frame = 1
Query:    1 RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE 564
            RVCLGTCQGQVLSV                   KQ+DLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPF+AAALT+GKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE
Sbjct:   97 RVCLGTCQGQVLSV-------------------KQIDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFLAAALTSGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE 265          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A2K3P7C1_TRIPR (Retinoblastoma-binding protein 5-like n=3 Tax=Trifolium TaxID=3898 RepID=A0A2K3P7C1_TRIPR)

HSP 1 Score: 149 bits (377), Expect = 2.780e-39
Identity = 82/212 (38.68%), Postives = 120/212 (56.60%), Query Frame = 1
Query:    4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLER---------------ESTTGRS---------------VRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549
            V +G  +G++L + +KDG+V A + ++G + VK +  SR+G+++L N  +RVIR+ E                ES +  +                R+FQD + +  W+   F+GD E++ GGS ++G   IY+W   GHLV  LEGP   L+ L  HPVRP + +   NG V +W      NW+AFA DF+ELEEN EYVE+EDEFD+V E
Sbjct:  165 VYVGNSKGEILVIDSKDGEVRAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPPKDEIRALNELNESLSNLNGVEKLTALGSKCLTLFREFQDAITKVHWKAPCFSGDGEWVIGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVRPIVVSVSLNGIVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLVPE 376          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: V7B623_PHAVU (Uncharacterized protein n=19 Tax=Phaseoleae TaxID=163735 RepID=V7B623_PHAVU)

HSP 1 Score: 147 bits (370), Expect = 3.570e-38
Identity = 81/212 (38.21%), Postives = 119/212 (56.13%), Query Frame = 1
Query:    4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRM------LERESTTGRSV------------------------RDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549
            V LG  +G++L +  K+G+V A + + G + VK +  SR+G+++L N  +RVIR+      L+ E+ T   +                        R+FQD + +  W+   F+GD E++ GGS ++G   IY+W   GHLV  LEGP   L+ L  HPV PF+ +   NG V +W      NW+AFA DF+ELEEN EYVE+EDEFD++ E
Sbjct:  188 VYLGNSKGEILVIDYKNGEVRAVVPITGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPLKEEARTLDDLNKNFGDLNNSEKLKAIGSKCLILFREFQDAITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVHPFVVSVSLNGFVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPE 399          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A072TPD3_MEDTR (Retinoblastoma-binding-like protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072TPD3_MEDTR)

HSP 1 Score: 145 bits (365), Expect = 3.600e-38
Identity = 78/209 (37.32%), Postives = 117/209 (55.98%), Query Frame = 1
Query:    4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRM--------------------------LERESTTGRSV----RDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDV 540
            V +G  +G++L + +KDG+V A + ++G + VK +  SR+G+++L N  +RVIR+                          +E+    G       R+FQD + +  W+   F+GD E++ GGS ++G   IY+W   GHLV  LEGP   L+ L  HPVRP + +    G V +W    I NW+AFA DF+E+EEN EYVE+EDEFD+
Sbjct:  188 VYVGNSKGEILVIDSKDGEVHAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPPKDEVRALAELNENLGDLNGVEKLKAAGSKCLTLFREFQDAITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVRPIVVSVSLCGIVYIWAKEYIENWSAFAPDFKEIEENEEYVEREDEFDL 396          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A0B2R2G4_GLYSO (Retinoblastoma-binding protein 5 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2R2G4_GLYSO)

HSP 1 Score: 144 bits (364), Expect = 6.160e-38
Identity = 78/212 (36.79%), Postives = 117/212 (55.19%), Query Frame = 1
Query:    4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLER-----------ESTTGRS-------------------VRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549
            V +G  +G++L +  K+GDV A + ++G + VK +  SR+G+++L N  +R+IR+ E            +  +G                      R+FQD + +  W+   F+GD E++ GGS ++G   IY+W   GHLV  LEGP   L+ L  HPV P + +   NG V +W      NW+AFA DF+ELEEN EYVE+EDEFD++ E
Sbjct:   85 VYVGNSKGEILVIDYKNGDVHAVVPISGGSVVKNIVFSRNGQYLLTNSNDRIIRIYENLLPLKDEVRALDDLSGNHNDLNNIENLKAVGSKCLTLFREFQDSITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVHPIVVSVSLNGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPE 296          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A444Y233_ARAHY (Uncharacterized protein n=7 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444Y233_ARAHY)

HSP 1 Score: 147 bits (370), Expect = 6.900e-38
Identity = 80/212 (37.74%), Postives = 116/212 (54.72%), Query Frame = 1
Query:    4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVR------------------------------DFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549
            V +G  +G++L +  KDG+V A + ++G + VK +  SR+G+++L N  +RVIR+ E        VR                              +FQD + +  W+   F+GD E++ GGS ++G   IY+W   GHLV  LEGP   L+ L  HPVRP + +   NG V +W      NW+AFA DF+ELEEN EYVE+EDEFD++ E
Sbjct:  253 VYVGNSKGEILVIDHKDGEVRAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPLKEEVRALDDLNKNFNDLDGVEKLKAVGTKCLTLFREFQDSITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRVGHLVKFLEGPKEALIDLAWHPVRPIVVSVSLNGIVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPE 464          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: Q1S5M0_MEDTR (Putative transcription factor WD40-like family n=3 Tax=Medicago truncatula TaxID=3880 RepID=Q1S5M0_MEDTR)

HSP 1 Score: 146 bits (368), Expect = 7.120e-38
Identity = 78/209 (37.32%), Postives = 117/209 (55.98%), Query Frame = 1
Query:    4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRM--------------------------LERESTTGRSV----RDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDV 540
            V +G  +G++L +  KDG+V A + ++G + VK +  SR+G+++L N  +RVIR+                          +E+    G       R+FQD + +  W+   F+GD E++ GGS ++G   IY+W   GHLV  LEGP   L+ L  HPVRP + +   +G V +W    I NW+AFA DF+E+EEN EYVE+EDEFD+
Sbjct:  188 VYVGNSKGEILVIDNKDGEVRAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPPKDEVRALAELNENLSDLNGVEKLKAAGSKCLTLFREFQDAITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVRPIVVSVSLSGIVYIWAKDYIENWSAFAPDFKEIEENEEYVEREDEFDL 396          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A5K1GPX1_9MAGN (Uncharacterized protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1GPX1_9MAGN)

HSP 1 Score: 141 bits (355), Expect = 2.960e-37
Identity = 76/212 (35.85%), Postives = 118/212 (55.66%), Query Frame = 1
Query:    4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLE-----RESTTGRS-------------------------VRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549
            + +G  +G++L +GT D +V A ++V G + +K +  SR+G+++L+N  +R IR+ E     RE++                              R+FQD + R +W+   F+GD E++ G S ++G   IY+W   GH V  LEGP   L  L  HP++P +A+   +G V +W      NW+AFA DF+ELEEN EYVE+EDEFD++ E
Sbjct:  148 IYVGNSKGEILVMGTNDRNVKAVVSVPGGSVIKNIVFSRNGQYLLINSNDRAIRVFENHLPQREASKALDEISESFEELQYGEKLKWLGTKCLTFFREFQDSITRIQWKVPCFSGDGEWVVGASASKGEHKIYIWARSGHFVKMLEGPKEALTDLAWHPLQPLVASVSMSGLVYIWAKDHTENWSAFAPDFKELEENEEYVEREDEFDLMPE 359          
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A1J7H551_LUPAN (Uncharacterized protein n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7H551_LUPAN)

HSP 1 Score: 144 bits (363), Expect = 3.110e-37
Identity = 78/212 (36.79%), Postives = 120/212 (56.60%), Query Frame = 1
Query:    4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRM--------------------------LERESTTGRS----VRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549
            V +G+ +G++L +  KDG+V A + ++G + VK +  SR+G+++L+N  +R IR+                          +E+    G      +R+ QD +NR +W+   F+GDSE++ GGS ++G   I++W   GHLV  LEGP   L+ L  HPV P + +   NG + +W      NW+AFA DF ELEEN EYVE+EDEFD++ E
Sbjct:  174 VYVGSSKGEILIIDYKDGEVRAMVPISGGSVVKSILFSRNGQYLLINSNDRTIRIYENILPLKDEVRALNELGENFNDLNGVEKFKAVGSKCLTLLREIQDTINRVQWKAPCFSGDSEWVVGGSASKGEHKIHIWDRAGHLVKILEGPKEALIDLAWHPVYPLVLSVSLNGIIYIWAKDYTENWSAFAPDFIELEENEEYVEREDEFDLIPE 385          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0T3_ECTSI2.240e-12799.47Retinoblastoma binding protein 5 n=1 Tax=Ectocarpu... [more]
A0A6H5KX51_9PHAE2.680e-10788.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2K3P7C1_TRIPR2.780e-3938.68Retinoblastoma-binding protein 5-like n=3 Tax=Trif... [more]
V7B623_PHAVU3.570e-3838.21Uncharacterized protein n=19 Tax=Phaseoleae TaxID=... [more]
A0A072TPD3_MEDTR3.600e-3837.32Retinoblastoma-binding-like protein n=1 Tax=Medica... [more]
A0A0B2R2G4_GLYSO6.160e-3836.79Retinoblastoma-binding protein 5 n=1 Tax=Glycine s... [more]
A0A444Y233_ARAHY6.900e-3837.74Uncharacterized protein n=7 Tax=Arachis hypogaea T... [more]
Q1S5M0_MEDTR7.120e-3837.32Putative transcription factor WD40-like family n=3... [more]
A0A5K1GPX1_9MAGN2.960e-3735.85Uncharacterized protein (Fragment) n=4 Tax=Nymphae... [more]
A0A1J7H551_LUPAN3.110e-3736.79Uncharacterized protein n=2 Tax=Lupinus angustifol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:306283..311102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score381.3
Seed ortholog evalue2.5e-103
Seed eggNOG ortholog2880.D7G0T3
Preferred nameRBBP5
Model size566
KEGG koko:K14961
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000922,GO:0001067,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007610,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018027,GO:0018193,GO:0018205,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034401,GO:0034641,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0036211,GO:0040029,GO:0042054,GO:0042393,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044648,GO:0044665,GO:0044666,GO:0044703,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048188,GO:0048468,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097549,GO:0140030,GO:0140034,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1904837,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons7
EggNOG free text desc.histone H3-K4 methylation
EggNOG OGsKOG1273@1,KOG1273@2759
Cds size564
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.912.1prot_Ecto-sp6_S_contig103.912.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 306283..311102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348742.1898372-CDS-Ecto-sp6_S_contig103:306282..3063571682348742.1898372-CDS-Ecto-sp6_S_contig103:306282..306357Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 306283..306357 -
1682348742.19908-CDS-Ecto-sp6_S_contig103:307618..3076781682348742.19908-CDS-Ecto-sp6_S_contig103:307618..307678Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 307619..307678 -
1682348742.2065406-CDS-Ecto-sp6_S_contig103:308422..3085841682348742.2065406-CDS-Ecto-sp6_S_contig103:308422..308584Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 308423..308584 -
1682348742.2139406-CDS-Ecto-sp6_S_contig103:309200..3092731682348742.2139406-CDS-Ecto-sp6_S_contig103:309200..309273Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 309201..309273 -
1682348742.221607-CDS-Ecto-sp6_S_contig103:309721..3098191682348742.221607-CDS-Ecto-sp6_S_contig103:309721..309819Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 309722..309819 -
1682348742.2290545-CDS-Ecto-sp6_S_contig103:310489..3105461682348742.2290545-CDS-Ecto-sp6_S_contig103:310489..310546Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 310490..310546 -
1682348742.2366316-CDS-Ecto-sp6_S_contig103:311063..3111021682348742.2366316-CDS-Ecto-sp6_S_contig103:311063..311102Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 311064..311102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.912.1

>prot_Ecto-sp6_S_contig103.912.1 ID=prot_Ecto-sp6_S_contig103.912.1|Name=mRNA_Ecto-sp6_S_contig103.912.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=188bp
RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGG
ERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGT
CSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTT
PIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE
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mRNA from alignment at Ecto-sp6_S_contig103:306283..311102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.912.1 ID=mRNA_Ecto-sp6_S_contig103.912.1|Name=mRNA_Ecto-sp6_S_contig103.912.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4820bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:306283..311102- (Ectocarpus species6 EcLAC_371)
CGGGTGTGCCTGGGCACGTGCCAGGGTCAGGTTCTCTCGGTAAGCGTGGC TCGAGAAAACTACGGACGTACAGCGGCATGCCTATCTACGTATATACATG CATGCACGAGTAGGTATAATAGTGTGTTGTTGTCGTGTACCGATTTGGAC GTGCATACCGCATGCAACGCTGGCGTTGCGGTTGCTGTTTTCGATTTCAC GGGTGGGCTCACCGCTGCCGTAAAACTGAAGAGAAGCATAGTACGGGGAT GGCCAGTAAGAAGGCCTTGTTGCGAAAAGCCAACATTGATTTCGCGGTAT GTGCTTGAAACGAACCGTGGTACGGACGGGACGCCCAGTAAGAAGGAATC CTTCCCTTGTGAAACCCCGGCCTTGATTTCCCGAGAGAGAAATCAATCGA TCGCTTGCAACGAAGAGTGAAGCTTTAGGTACTCTCCGAATCCCAGGAGA ACATTATATTGTGTGAAGTCTTGGTTGCGGCCAGTTGATTGGTTGTATAG TCACCCCCGTGTCGTCCACGCCTCGTTACGTTGACTGTTGGTTCCTTCCT TCCCAGGTTGGTACTAAGGACGGGGATGTTTCTGCCTCCATGACAGTTGC GGGCTGTGCGAAGGTGCGCGCTTCTTTGTGTATTTTTACATCTTCTTTGT GATTGTGTTTGTCTTGGATAACATATTGTACTGAAGCCCTCCCCTCCCGA ACGCCTGGACCGGCAGAACGGAGAGAGAATCTTTGCCGTTTTCTGCACGG GTGAAAAACGAAGCAAATATACAGCTGAAGTTTGAGCGACGAAACGGCGG TTTCGTGAGAAATGCCGTGAACGACTCGGGCCCGTGGACGAGGGTCCCCG CTAAGGTACAGTTGCGTTTATCCCCGCCCGGCGAGCATGTGCCCACAGGA GGAAACAACTTTGCCCACGCAGGCAGATATTATCGTGCCGCCGAATGTCA AACATTTTTGGTTAGCCGGGATGCTCGATCAGGCAAACGGCGTATCTGGT TTGGCACAGCAAGCGCAAGGATGATGACACTATCAGCTTCAGCTTCATCC TTGTGAGATGTAGATACCCTGGGCCGGCGATTATCCGACATATCGCTCCG TCCCGGCGTTGTAGGGATGCGAGGTCAGTGGTCTAACGACTACGGCATGC GTTTACAAGAGTACCCCCTCCCCCCGCGCTTTCGTCACATGACGGTCAAA ACGCCCCTCCCATGGCTGCCATGTTGACACCTCTTCCGACCCCCCCCCCC CGGAACTGCTGTCATGGTCTTCGGAGAGAACAGGTGAAGCAGATGGACTT GAGCCGGGACGGTAAGTGGATGCTGGTCAACGGCGGCGAGAGGGTGATAC GGATGCTGGAGCGGGAGAGCACCACCGGGAGGTGTGAATCGTCGCCGCCG TTTTGGACACGGTTGCCCTTTTTCGGGCCCAAGCAGCACACGAACCGCTC CGACTAGCTAAATAGATGGCAAATGTTTCCTGAAACTGCGTACAACCCCG CCCCCCACAAAAGAAAGTCATCCCCGCGCCAGAGACTTCCATCCCTTTCG AGGTAGAGGCTGGGGGCAGTTAGCCGTCATGGCCCCGCCCCGCAGTATAT AGGTGCCCACGTGCGTAATGGAGGGGAGCCTCAAAAGCGGCGCGCACTTC GCCCAAGATAGCGCCACTTTTTTTTTTTCGATTGTTGGTGTTACGGTGGC CGTGGGAGCGGGACCCTTTGCCAGAATTGCGGATGAACAGCGAGTTTGCG GTGACGGCCCCCGCCTTGTCAACCCTGCCCCCTGCTGCTGCTGCTGCTGC TGCTGCTGCTGCTGGTGCCCCACTTGAAGGTCTGTGAGGGATTTCCAAGA CGTGGTGAACAGAACAAGGTGGCAGTGCTGCCGTTTCACGGGGGATTCGG AGGTGAGATTGGCTGTTGGCGTGGTCGTTGTTCGTTACTATTGCTGCTGC TGTTGTTGTTGTGGTCGTATGTTGTTGTTGTAGTTGTTGCTGTCGTCGTT GAATGTTGTTGTTGCGGTCGTTTGTTATTGTTGATGTTTCGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTATTGTTGCTGTTGGGGTCATTGGTGTCGGTGTCGGCATTGG TTTTGTTGTTGTCATCGTCGTCGTCGTCGTTGTCGTTGTCAGCCCTTACC CCTATCACTGCTACCGCCACACTCGCGTTGCTACCATTGCTCGCGCCAAT CCGCAACTCTCGGTAGCAGCACCACACGCGGGGGCCATTTTTTCTCCTGC GCTTCTCCAAACAGTGGGGTTCTCTAAAATGAGGCGGCGGAGAGGTAGCT TAGTATAGACCGCCTTTTTGGGAGCAACCGCCTTGTTCATTGAACGTGTT CAACAGTAGAACCACTTGATAATATTTCGTCCATACCAGCCAATCTCACA CGCCTTACATAGGGCGACCGCGTTATTCAGACGGCCTTATTCCGGGGAAC CCCATTTTGTACGAGCAGTACATCGCGGGAGGGAGTCGGGCGGAGGGCAC GTGCAGCATCTACCTCTGGACCATCGAGGGGCACCTGGTGACACGGTTGG AGGGACCCAACCTGGGGTTGCTAAGCCTGACGCGGCACCCGGTGCGGCCG TTCATGGCTGCCGCCCTGACGAACGGAAAGGTGAGAGCTGAGCTGTTGTT GTGTCTGTCTGTCGCGTCACGTGTGCGTGGTTTTCGGTGTTGCGGTCTTG TATCCCAATGCGCATGGCCGTCGTAGCTATGTGTGTTGACATGTATTTCG GCTGTCTATCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC TGTCTGTCTGGTGTGCATGTTTTTCGTCGTTGTATCTCGTCACATGTGCG CGAATCTAAGGCTTCGTAGATCGCGCTGAGAATGTTAACCCTAGGCCCTC TGGAGATTGTTTTTTTTTTTTTTTCCTTCGTGACGGTGCAACGTTTTTCA ATGAATTTTGAAATTTGTAGGTCTAACACAGCTAGCTAGCTCCATGTCCC ACTGCGTGCGATAATGTACCGGTCTTGCCTTGGCACTTGGTAGCAGCGCC CCAGTGTCGGCGGCATCTGAACGGGGACCGCTTTGCATAGCATTTAGCCC GTTTTGACACTGTCGAAGCTGCTGCTGCCACTGCCCTCGTCTGAACATCT TGTAACGTGGTTCGTTCTCGACGAGCCTTTGAGACAGATAGGTCTTTTTT CTCAACGAGCCTTTGCGGCGGATAGGGTCTTCTTCCTGCCGTGCTGAAGC GATGTTATCGAATGCACAAACGCGCATCTTACAAACCTCTACCGTACGGC TCCATCAATTTTTTTACTTCCAGCAAGCTTCACTTGCCTCCGGCTGTTGC CCCCTTGTCATTCTTTCCTGGAAGGTCCAACTGTGGGGAACCACCCCCAT AGCCAACTGGACTGCGTTTGCGGCAGATTTCGAGGTGAGAGGCAGAGCAC ACCGCTCCTCCGCCCCCCTCCAAGGACCTAGCTATCTAGCTCTTCTCGTG TGTGTTTTGGTCTCTTGCGCGCGCGAGCAGCAGAGAGGATTTTGTGGGCC TTCTACCGTCCGTGGTGTTTCGCCATTGCTGCCGTGCTGTTTTGTCCTCG GCCATGCGTCTTTTCTTCTTCGGAACCGCGAGCGGAAGGATGTCGCAGTG AGAACTCGCTAGAAGGATGACGAGTGGCACAAAATGCTCGACGTACTCGC TGTAGCCGCTGACCACAATCCCTTTTCCCCGGCAATGGAGAGGGGGGGTT GTTGGTTGTCGCCTACCGGCTGTTGCTGTCCACCGCTGGAGGGCTATTGT GGAGCCTTACACGGGTCATCTTGCCTGAGATATGCCTCTTACCCCTTGAC CTCGTTTGGTTGCTCGCTGCCTTCAGTGTTTCGTCGTCAACGTCTGTTTC GTCGTCAACGTCTGTTTCGTCGTTGTGTCGCTATTAGCAGTGAGGACGGG AAGAATGCACGTGTTTCGCGAAATAGTAAATTACTAGACTCTCCCCGCTA GAAAGCAAGGTCTTCATCCTGCCTCACACATGCGCAGCGTCAAAGATGTG TGGCTGGATCATTTATCGCCCTTGTGCCTCGTGTCAGAAAGGGATCTATC TCCCCGACATGTCTGTTGAGACCGCCTCCGCGAGGATGCCAAGCGTCATA TGTAAAATAGAGAGGGGGGTTTCGTAACCAGAACCCTAACCCTAACCTCA GACCCAACCCCAAACCCTTAACCCTACTGAAACCAAGCTCAATATCCACA CGGCGTCAACAGCCCCCCAGGACCCGGACCGCGTTCTGGACGATGTTAAG CGTTGTATGTGAAATTGAGCGGGGTTTTTCGTATCCCGTACCCTAACCCG TAAACCCTACTGAAACCAAGTGAAAATGTCCTGACGAAGGCTACTTGTCT GTTGTAGGGGGGGGTGTACTCATAATCGTGCATGCCGTAGTCGTTTGACC ATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCATGCCGGGTTCTCAC CGGACCAGGCTCTTGTTGTCGTCTTCGTCGTCTAGGGGGTAAAATGTGCT CGCCATTGGACGGCCTAAGGCAAGCAATCAATATGTGGATCGCCTTGGTG AGGATGTTTTTGTTTAGCTATGAAATGGAGAGGGGTGGGTTGTAACCCTA CCCCTCAATAGGTATCCCCCCCCCCTACCCTACCCCGCCCGACAGGAGCT GGAAGAGAACGTGGAGTACGTGGAGAAGGAGGACGAGTTTGACGTGGTGG TGGAGGAGGGTGACCCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:306283..311102-

>mRNA_Ecto-sp6_S_contig103.912.1 ID=mRNA_Ecto-sp6_S_contig103.912.1|Name=mRNA_Ecto-sp6_S_contig103.912.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:306283..311102- (Ectocarpus species6 EcLAC_371)
CGGGTGTGCCTGGGCACGTGCCAGGGTCAGGTTCTCTCGGTTGGTACTAA
GGACGGGGATGTTTCTGCCTCCATGACAGTTGCGGGCTGTGCGAAGGTGA
AGCAGATGGACTTGAGCCGGGACGGTAAGTGGATGCTGGTCAACGGCGGC
GAGAGGGTGATACGGATGCTGGAGCGGGAGAGCACCACCGGGAGGTCTGT
GAGGGATTTCCAAGACGTGGTGAACAGAACAAGGTGGCAGTGCTGCCGTT
TCACGGGGGATTCGGAGTACATCGCGGGAGGGAGTCGGGCGGAGGGCACG
TGCAGCATCTACCTCTGGACCATCGAGGGGCACCTGGTGACACGGTTGGA
GGGACCCAACCTGGGGTTGCTAAGCCTGACGCGGCACCCGGTGCGGCCGT
TCATGGCTGCCGCCCTGACGAACGGAAAGGTCCAACTGTGGGGAACCACC
CCCATAGCCAACTGGACTGCGTTTGCGGCAGATTTCGAGGAGCTGGAAGA
GAACGTGGAGTACGTGGAGAAGGAGGACGAGTTTGACGTGGTGGTGGAGG
AGGGTGACCCAGAG
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