mRNA_Ecto-sp6_S_contig103.912.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: D7G0T3_ECTSI (Retinoblastoma binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI) HSP 1 Score: 379 bits (974), Expect = 2.240e-127 Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 1 Query: 1 RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE 564 RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPF+AAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE Sbjct: 206 RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFLAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE 393
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A6H5KX51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX51_9PHAE) HSP 1 Score: 328 bits (840), Expect = 2.680e-107 Identity = 166/188 (88.30%), Postives = 169/188 (89.89%), Query Frame = 1 Query: 1 RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE 564 RVCLGTCQGQVLSV KQ+DLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPF+AAALT+GKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE Sbjct: 97 RVCLGTCQGQVLSV-------------------KQIDLSRDGKWMLVNGGERVIRMLERESTTGRSVRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFLAAALTSGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVEEGDPE 265
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A2K3P7C1_TRIPR (Retinoblastoma-binding protein 5-like n=3 Tax=Trifolium TaxID=3898 RepID=A0A2K3P7C1_TRIPR) HSP 1 Score: 149 bits (377), Expect = 2.780e-39 Identity = 82/212 (38.68%), Postives = 120/212 (56.60%), Query Frame = 1 Query: 4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLER---------------ESTTGRS---------------VRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549 V +G +G++L + +KDG+V A + ++G + VK + SR+G+++L N +RVIR+ E ES + + R+FQD + + W+ F+GD E++ GGS ++G IY+W GHLV LEGP L+ L HPVRP + + NG V +W NW+AFA DF+ELEEN EYVE+EDEFD+V E Sbjct: 165 VYVGNSKGEILVIDSKDGEVRAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPPKDEIRALNELNESLSNLNGVEKLTALGSKCLTLFREFQDAITKVHWKAPCFSGDGEWVIGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVRPIVVSVSLNGIVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLVPE 376
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: V7B623_PHAVU (Uncharacterized protein n=19 Tax=Phaseoleae TaxID=163735 RepID=V7B623_PHAVU) HSP 1 Score: 147 bits (370), Expect = 3.570e-38 Identity = 81/212 (38.21%), Postives = 119/212 (56.13%), Query Frame = 1 Query: 4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRM------LERESTTGRSV------------------------RDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549 V LG +G++L + K+G+V A + + G + VK + SR+G+++L N +RVIR+ L+ E+ T + R+FQD + + W+ F+GD E++ GGS ++G IY+W GHLV LEGP L+ L HPV PF+ + NG V +W NW+AFA DF+ELEEN EYVE+EDEFD++ E Sbjct: 188 VYLGNSKGEILVIDYKNGEVRAVVPITGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPLKEEARTLDDLNKNFGDLNNSEKLKAIGSKCLILFREFQDAITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVHPFVVSVSLNGFVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPE 399
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A072TPD3_MEDTR (Retinoblastoma-binding-like protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072TPD3_MEDTR) HSP 1 Score: 145 bits (365), Expect = 3.600e-38 Identity = 78/209 (37.32%), Postives = 117/209 (55.98%), Query Frame = 1 Query: 4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRM--------------------------LERESTTGRSV----RDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDV 540 V +G +G++L + +KDG+V A + ++G + VK + SR+G+++L N +RVIR+ +E+ G R+FQD + + W+ F+GD E++ GGS ++G IY+W GHLV LEGP L+ L HPVRP + + G V +W I NW+AFA DF+E+EEN EYVE+EDEFD+ Sbjct: 188 VYVGNSKGEILVIDSKDGEVHAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPPKDEVRALAELNENLGDLNGVEKLKAAGSKCLTLFREFQDAITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVRPIVVSVSLCGIVYIWAKEYIENWSAFAPDFKEIEENEEYVEREDEFDL 396
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A0B2R2G4_GLYSO (Retinoblastoma-binding protein 5 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2R2G4_GLYSO) HSP 1 Score: 144 bits (364), Expect = 6.160e-38 Identity = 78/212 (36.79%), Postives = 117/212 (55.19%), Query Frame = 1 Query: 4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLER-----------ESTTGRS-------------------VRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549 V +G +G++L + K+GDV A + ++G + VK + SR+G+++L N +R+IR+ E + +G R+FQD + + W+ F+GD E++ GGS ++G IY+W GHLV LEGP L+ L HPV P + + NG V +W NW+AFA DF+ELEEN EYVE+EDEFD++ E Sbjct: 85 VYVGNSKGEILVIDYKNGDVHAVVPISGGSVVKNIVFSRNGQYLLTNSNDRIIRIYENLLPLKDEVRALDDLSGNHNDLNNIENLKAVGSKCLTLFREFQDSITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVHPIVVSVSLNGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPE 296
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A444Y233_ARAHY (Uncharacterized protein n=7 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444Y233_ARAHY) HSP 1 Score: 147 bits (370), Expect = 6.900e-38 Identity = 80/212 (37.74%), Postives = 116/212 (54.72%), Query Frame = 1 Query: 4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLERESTTGRSVR------------------------------DFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549 V +G +G++L + KDG+V A + ++G + VK + SR+G+++L N +RVIR+ E VR +FQD + + W+ F+GD E++ GGS ++G IY+W GHLV LEGP L+ L HPVRP + + NG V +W NW+AFA DF+ELEEN EYVE+EDEFD++ E Sbjct: 253 VYVGNSKGEILVIDHKDGEVRAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPLKEEVRALDDLNKNFNDLDGVEKLKAVGTKCLTLFREFQDSITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRVGHLVKFLEGPKEALIDLAWHPVRPIVVSVSLNGIVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPE 464
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: Q1S5M0_MEDTR (Putative transcription factor WD40-like family n=3 Tax=Medicago truncatula TaxID=3880 RepID=Q1S5M0_MEDTR) HSP 1 Score: 146 bits (368), Expect = 7.120e-38 Identity = 78/209 (37.32%), Postives = 117/209 (55.98%), Query Frame = 1 Query: 4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRM--------------------------LERESTTGRSV----RDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDV 540 V +G +G++L + KDG+V A + ++G + VK + SR+G+++L N +RVIR+ +E+ G R+FQD + + W+ F+GD E++ GGS ++G IY+W GHLV LEGP L+ L HPVRP + + +G V +W I NW+AFA DF+E+EEN EYVE+EDEFD+ Sbjct: 188 VYVGNSKGEILVIDNKDGEVRAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPPKDEVRALAELNENLSDLNGVEKLKAAGSKCLTLFREFQDAITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVRPIVVSVSLSGIVYIWAKDYIENWSAFAPDFKEIEENEEYVEREDEFDL 396
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A5K1GPX1_9MAGN (Uncharacterized protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1GPX1_9MAGN) HSP 1 Score: 141 bits (355), Expect = 2.960e-37 Identity = 76/212 (35.85%), Postives = 118/212 (55.66%), Query Frame = 1 Query: 4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRMLE-----RESTTGRS-------------------------VRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549 + +G +G++L +GT D +V A ++V G + +K + SR+G+++L+N +R IR+ E RE++ R+FQD + R +W+ F+GD E++ G S ++G IY+W GH V LEGP L L HP++P +A+ +G V +W NW+AFA DF+ELEEN EYVE+EDEFD++ E Sbjct: 148 IYVGNSKGEILVMGTNDRNVKAVVSVPGGSVIKNIVFSRNGQYLLINSNDRAIRVFENHLPQREASKALDEISESFEELQYGEKLKWLGTKCLTFFREFQDSITRIQWKVPCFSGDGEWVVGASASKGEHKIYIWARSGHFVKMLEGPKEALTDLAWHPLQPLVASVSMSGLVYIWAKDHTENWSAFAPDFKELEENEEYVEREDEFDLMPE 359
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Match: A0A1J7H551_LUPAN (Uncharacterized protein n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7H551_LUPAN) HSP 1 Score: 144 bits (363), Expect = 3.110e-37 Identity = 78/212 (36.79%), Postives = 120/212 (56.60%), Query Frame = 1 Query: 4 VCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGERVIRM--------------------------LERESTTGRS----VRDFQDVVNRTRWQCCRFTGDSEYIAGGSRAEGTCSIYLWTIEGHLVTRLEGPNLGLLSLTRHPVRPFMAAALTNGKVQLWGTTPIANWTAFAADFEELEENVEYVEKEDEFDVVVE 549 V +G+ +G++L + KDG+V A + ++G + VK + SR+G+++L+N +R IR+ +E+ G +R+ QD +NR +W+ F+GDSE++ GGS ++G I++W GHLV LEGP L+ L HPV P + + NG + +W NW+AFA DF ELEEN EYVE+EDEFD++ E Sbjct: 174 VYVGSSKGEILIIDYKDGEVRAMVPISGGSVVKSILFSRNGQYLLINSNDRTIRIYENILPLKDEVRALNELGENFNDLNGVEKFKAVGSKCLTLLREIQDTINRVQWKAPCFSGDSEWVVGGSASKGEHKIHIWDRAGHLVKILEGPKEALIDLAWHPVYPLVLSVSLNGIIYIWAKDYTENWSAFAPDFIELEENEEYVEREDEFDLIPE 385 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.912.1 >prot_Ecto-sp6_S_contig103.912.1 ID=prot_Ecto-sp6_S_contig103.912.1|Name=mRNA_Ecto-sp6_S_contig103.912.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=188bp RVCLGTCQGQVLSVGTKDGDVSASMTVAGCAKVKQMDLSRDGKWMLVNGGback to top mRNA from alignment at Ecto-sp6_S_contig103:306283..311102- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.912.1 ID=mRNA_Ecto-sp6_S_contig103.912.1|Name=mRNA_Ecto-sp6_S_contig103.912.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4820bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:306283..311102- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:306283..311102- >mRNA_Ecto-sp6_S_contig103.912.1 ID=mRNA_Ecto-sp6_S_contig103.912.1|Name=mRNA_Ecto-sp6_S_contig103.912.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:306283..311102- (Ectocarpus species6 EcLAC_371)back to top |