mRNA_Ecto-sp6_S_contig103.908.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.908.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 863 bits (2229), Expect = 5.790e-316 Identity = 429/438 (97.95%), Postives = 432/438 (98.63%), Query Frame = 1 Query: 1 MRLSRLPLIFGVLTGSILVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSMEALLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHEMVHSDLDFSTGNLETRFYWAPFCFGPESVGAKLATVMDGVQTAKRGDKRSVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQLSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLALVERESASPLVP 1314 MRLSRLPLI GVLTGS LVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSME LLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKH+MVHSDLDFSTGNLETRFYWAPFCFG ESVGAKLATVMDGV+TAKRGDKR+VIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQ SKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRE NPIHFHEPVKLVEGKMLWDLLALVERESASPLVP Sbjct: 1 MRLSRLPLISGVLTGSTLVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSMEELLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQWSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALVERESASPLVP 438
BLAST of mRNA_Ecto-sp6_S_contig103.908.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 395 bits (1014), Expect = 2.600e-130 Identity = 225/444 (50.68%), Postives = 275/444 (61.94%), Query Frame = 1 Query: 46 SILVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSMEALLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHEMVHSDLDFSTGNLETRFYWAPFCFGPESVGAKLATVMDGVQTAKRGDKRSVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAW--ADPTAEKGQLSKAVHASPNTTTR-STTETN-------------------GVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGN--EDAEGGIYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLALVERESASP 1305 ++L C S V A S P LDWSEW DPP + + ++ A S M++ G + A VR LV CA RL+++ D+CG E P +D YRL HM SG LPCGFEER E +ED+ASK++FHFIGDST RRLGESFVSIFTG+GS H +V D++FS+GNL+ FYWAP C GPESVGA L TVMD V AK G KR+VIITAFGVHD++EL G S SY LP D V+ +R A LGAC+ T QLV+ AAA + A P E+ A H PN +T+ ET+ G + A AA+ P PL+FLMQNNRYPP S E+ + E+L RIQR V EWEA EG+ +D E G++LVDDSV L+ NLSCYR +NPIHF EPVKL+EGKMLWDLL LV+ S P Sbjct: 13 ALLACLASVVCAASVYPSDPHLDWSEWDDPPASHLNNDPAKSIMDS------------NGRQHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAVLAAKDG-KRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLP 443
BLAST of mRNA_Ecto-sp6_S_contig103.908.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 315 bits (808), Expect = 8.770e-100 Identity = 200/447 (44.74%), Postives = 247/447 (55.26%), Query Frame = 1 Query: 46 SILVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSMEALLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHEMVHSDLDFSTGNLETRFYWAPFCFGPESVGAKLATVMDGVQTAKRGDKRSVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAW--ADPTAEKGQLSKAVHASPNTTTR------STTETNGVSFS-----------------FGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGN--EDAEGGIYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLALVERESASP 1305 ++L C S V A P LDWSEW PP + + D+ A S+M+ GG + A VR RL AG PC +ER + +E +ASK++FH IGDST RRLGESFVSIFTG+GS H + D DFS+GNL+ FYWAP C GPESVGA LA+VMD V+ AK G KR+VIITA+GVHD++EL G S SY ALP D V+ +R A LGAC+ TT QLV+AAAA + A P E+ PN +T+ T+E GA AA+ P PL+FLMQNNRYPP S E+ + E+L IQR V EWEA EG+ + E G++LVD+SV L+ NLSCYR +NPIHF EPVKL+EGKMLWDLL LV+ S P Sbjct: 13 ALLACLASVVLAAPVYPRDPHLDWSEWDAPPASHLKDDPAKSTMDG------------GGRQHVDDAGVR--------RLHPAG-------------------------PCVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLASVMDAVRAAKDG-KRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLP 413
BLAST of mRNA_Ecto-sp6_S_contig103.908.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 193 bits (490), Expect = 3.020e-54 Identity = 131/357 (36.69%), Postives = 169/357 (47.34%), Query Frame = 1 Query: 220 GGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHEMVHSDLDFSTGNLETRFYWAPFCFGPESVGAKLATVMDGVQTAKRGDKRSVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQLSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLALVER 1290 GG H L V CA RL + G C + + D+R+P M SG LPCGFE R P ED+AS++ HF+GDST RRL ESF+SI TG S H H + + L+ F+WAP+C + L +MD A G +R++I+TAFGV DS +G A LG C LVQ A P ++ + ASP PLVFL+QNN + P S +D +L +L +IQR V G ++A +YLV D S+F LSCYR S IHF++PVKLVEGKMLWDL+ LV R Sbjct: 63 GGLHDL--------VRQCAERLDLPGYTCEKNSSSA---DFRIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYC--RQVKNESLHEIMDN--QALDGGRRAIIVTAFGVWDS------------------------SHGGGDEAALGVCADAVRSLVQVA--------QPPPAGSTTAENIAASP------------------------------PLVFLLQNNPFLPGSEQDLFLRDLHQIQREIVDS-----GEQEA---VYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELVAR 334
BLAST of mRNA_Ecto-sp6_S_contig103.908.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 186 bits (473), Expect = 4.400e-49 Identity = 144/425 (33.88%), Postives = 196/425 (46.12%), Query Frame = 1 Query: 208 AAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHEMVHSDLDFSTGNLETRFYWAPFCFGPESVGAKLATVMDGVQTAKRGD-----------------KRSVIITAFGVHDSYELPLLVKGSASTS-YMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVM------------------AWADPTAEKGQLSKAVHAS---PNTTTRSTTETNGVSFSFGAPGTTA---------------------ATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGG-------IYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLAL 1281 A Q GG H+L V DCAR+L + G C + PV++D YR+P MESG CGFE P+E L D+A K+ F FIGDST RRL ESFVSI +G+ S H +VH +D S G+L+ F WAP C + A + + G +++ G +R+VI TAFGVHD+ EL + Y LP + V A L C+ T +LV+ AAA + ++ T E G+ V+A + GVS + LVFL+QNN + P S D +L++L RIQ + E A +G E ++L+ D SL+ ++SCYR IHFHEPVKLVEGKMLW L+ + Sbjct: 223 AGQPGGVHRL--------VSDCARQLMLPGFSC---DEPVLQDQYRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDAL-GFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDVGNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGGGVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVEI 635
BLAST of mRNA_Ecto-sp6_S_contig103.908.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 170 bits (431), Expect = 3.210e-43 Identity = 148/446 (33.18%), Postives = 192/446 (43.05%), Query Frame = 1 Query: 208 AAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHEMVHSDLDFSTGNLETRFYWAPFCFGPESVGAKLATVMD------GVQTAKRGD-----------KRSVIITAFGVHDSYELPLLVKGSASTS-YMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWA-------------------DPTAEKGQLSK-----AVHASPNTTTRSTTETNG-----------------VSFSFGAPGTTAATDPTPPL-------------VFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAG--------EGNEDAEGG----------IYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLL 1275 A Q GG H+L V DCAR+L + G C + PV+ D YR+P MESG CGFE R P+E L D+ASK+ F FIGDST RRL ESFVSI +G+ S H +VH +D S G+L+ F WAP C V A + + G GD +R+VI TAFGVHD+ EL + Y LP V A L C+ T +LV+ AA DP+ + AV+A + + G V S G VFL+QNN + P S D +L++L RIQ + E A E ++D E ++L+ D SL+ ++SCYR IHFHEPVKLVEGKMLW L+ Sbjct: 195 AGQPGGVHRL--------VSDCARQLVLPGFGC---DEPVLADQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGGGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVAAXXXXXXXXXXXXXXXXXXXXXXXXXKDPSLSEAXXXXXXXQVAVNADGRRDGIADKKLRGGXXXXXXXXXXXXXEVAVHESDGHGSNXXXXXXXXXXXXXXXXXXXXXXXVFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 629
BLAST of mRNA_Ecto-sp6_S_contig103.908.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 135 bits (339), Expect = 2.120e-32 Identity = 99/269 (36.80%), Postives = 134/269 (49.81%), Query Frame = 1 Query: 409 LEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHEMVHSDLDFSTGNLETRFYWAPFCFGPESVGAKLATVMDGVQTA--KRGDKRSVIITAFGVHDSYEL-----PLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEK------GQLSKAVHASPNTTTRSTTETNG--VSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGIYLVDD 1170 LED++S++ FHF+GDST RRL ESFVSI TGQ S H +VH +D S+G+L+ F+WAP C S K+ +D + A + GD R++IITAFGVH+++ L L + +A +S+ D A L C+ T+QLV A A EK L A P T T G VS S G PPLVFL+QNN Y P S ED +LE L +Q V++ G++++DD Sbjct: 79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARS---KIQASIDEIVAAQLRNGDARAIIITAFGVHNAHRLYGDQAGTLPRYTAPSSH------DTFREEDAEAAALNVCEEVTSQLVHVANLTAGRSASANQEKLYSPGHRGLDVADEGDPKFGRPRGTWTGGGDVSLSIDDEG-------LPPLVFLLQNNHYFPGSEEDRFLEHLHDVQDRVVRQGAKDIARHGENAGVFVLDD 331 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.908.1 >prot_Ecto-sp6_S_contig103.908.1 ID=prot_Ecto-sp6_S_contig103.908.1|Name=mRNA_Ecto-sp6_S_contig103.908.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=439bp MRLSRLPLIFGVLTGSILVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVback to top mRNA from alignment at Ecto-sp6_S_contig103:268340..273939- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.908.1 ID=mRNA_Ecto-sp6_S_contig103.908.1|Name=mRNA_Ecto-sp6_S_contig103.908.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5600bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:268340..273939- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:268340..273939- >mRNA_Ecto-sp6_S_contig103.908.1 ID=mRNA_Ecto-sp6_S_contig103.908.1|Name=mRNA_Ecto-sp6_S_contig103.908.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1317bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:268340..273939- (Ectocarpus species6 EcLAC_371)back to top |