mRNA_Ecto-sp6_S_contig103.906.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.906.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI) HSP 1 Score: 985 bits (2546), Expect = 0.000e+0 Identity = 608/656 (92.68%), Postives = 612/656 (93.29%), Query Frame = 1 Query: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKRKSASTLEKALELLSPPAGEQQQHQHKQQQPSSKTRKVTDGYPKPSITIPGPALKAARKSEGATTAPEELGRSTRWSSKGRRVSAPEAFEEAVPSPAAAAPPEDEFCAAADAVDTDEDVDVNDHACVSNGAVXXXXXXXXXXXXXXAPQQSIASQLDALAAQEDLLLQQFRADMRHLDEAKASREKEIRVAQAALEKIKATRETTKSNTAEQRKRMVAERDRLTHLRCQEMMREEAEHRQKKDDMWSAVEPAMDTATLPTEEASGYSFGGGSTATEASEWGAQPGDGPPGASSPPGVEGEERSXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAHEEASDGNAEEVPXXXXXXXXXXXXXDGSALVSCSVEETAAASSPGEGETASSLLGKGSAARNEGGYSPSLDASATQGTSAVVENGAPHANSVGAGAAVASALTVEEGLGSGSDGASFPPA-EDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GCSSHFQDGDARTGGGEANXXXXXXXXAASTGVSGRATRHGTRHGGLVSET 1959
MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKRKSASTLEKALELLSPPAGEQQQHQHKQQQPSSKTRKVTDGYPKPSITIPGPALKAARKSEGATTAPEELGRSTRWSSKGR+VSAPEAFEEAVPSPAAAAPPEDEFCAAADAVDTDEDVDVNDHACVSNGAVXXXXXXXXXXXXX APQQSIASQLDALAAQEDLLLQQFRADMRHLDEAKASREKEIRVAQAALEKIKATRETTKSNTAEQRKRMVAERDRLTHLRCQEMMREEAEHRQKKDDMWSAVEPAM TATLPTEEASGYSFGGGSTATEASEW AQPGDGPPGASSPPGV+GE RS ASA+EEASDGNAEE P XXXXXXXXXXXDGSALVSCSVEETAAASSPGEGET SSLLGKGSAARNEGGYS SLDASATQGTSAVVENGAPHANSVGAGAAV SALT+EEGLGSGSDGAS PP EDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GCSSHFQDGDARTGGGEANXXXXXXXXAASTG SGRATRHGTRHGGLVSET
Sbjct: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKRKSASTLEKALELLSPPAGEQQQHQHKQQQPSSKTRKVTDGYPKPSITIPGPALKAARKSEGATTAPEELGRSTRWSSKGRKVSAPEAFEEAVPSPAAAAPPEDEFCAAADAVDTDEDVDVNDHACVSNGAVXXXXXXXXXXXXXGAPQQSIASQLDALAAQEDLLLQQFRADMRHLDEAKASREKEIRVAQAALEKIKATRETTKSNTAEQRKRMVAERDRLTHLRCQEMMREEAEHRQKKDDMWSAVEPAMATATLPTEEASGYSFGGGSTATEASEWVAQPGDGPPGASSPPGVDGEGRSAALLLASSSADAGQGGPGGGEAVAGRGDASAYEEASDGNAEEAPGSXXXXXXXXXXXDGSALVSCSVEETAAASSPGEGETGSSLLGKGSAARNEGGYSASLDASATQGTSAVVENGAPHANSVGAGAAVTSALTIEEGLGSGSDGASLPPVGEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCSSHFQDGDARTGGGEANXXXXXXXXAASTGGSGRATRHGTRHGGLVSET 656
BLAST of mRNA_Ecto-sp6_S_contig103.906.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI) HSP 1 Score: 117 bits (292), Expect = 1.260e-25 Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRAS 339
MD DG L++ CN C NK + C+ R+HN R++ V+ DEL HRQCVKPDQ +TI+KL D T E+ +E+ +IFQ C C+++K+C+ GH+L DW P GR +
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVA 113
BLAST of mRNA_Ecto-sp6_S_contig103.906.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.160e-19 Identity = 49/124 (39.52%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRG----RASQNKRKSA 360
MD DG L++ CN C NK + C+ R+HN R++ V+ DEL HRQCVKPDQ +TI+KL D T E+ +E+ ++IFQ C C+++K+C+ G + +GG+ + + +R+SA
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGKVFSATFGKGGKSAGPLKGGRGRRRSA 124 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.906.1 >prot_Ecto-sp6_S_contig103.906.1 ID=prot_Ecto-sp6_S_contig103.906.1|Name=mRNA_Ecto-sp6_S_contig103.906.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=654bp MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCback to top mRNA from alignment at Ecto-sp6_S_contig103:235375..243655+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.906.1 ID=mRNA_Ecto-sp6_S_contig103.906.1|Name=mRNA_Ecto-sp6_S_contig103.906.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8281bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:235375..243655+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:235375..243655+ >mRNA_Ecto-sp6_S_contig103.906.1 ID=mRNA_Ecto-sp6_S_contig103.906.1|Name=mRNA_Ecto-sp6_S_contig103.906.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1962bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:235375..243655+ (Ectocarpus species6 EcLAC_371)back to top |