Homology
BLAST of mRNA_Ecto-sp6_S_contig103.904.1 vs. uniprot
Match:
D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)
HSP 1 Score: 392 bits (1006), Expect = 4.340e-136
Identity = 237/252 (94.05%), Postives = 243/252 (96.43%), Query Frame = 1
Query: 1 MDQDGVFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEVIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRAPRSARGRSASTSVVDDEMEVVEDYGDGGGSGRKVFPAGGRGRKGRTXXXXXXXXXGVAPQESTATRRGPHKRKSPASSAYPRSASSHQLVQLKVCYC 756
MDQDG+FLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDE++IFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PGRAPRSARGRSASTSVVDDEMEVVEDYGDGGG+GRKVFPAGGRGR+G XXXXXXX PQESTATRRGPHKRKSPASSAYPRSASSHQL+QLKVCYC
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PGRAPRSARGRSASTSVVDDEMEVVEDYGDGGGTGRKVFPAGGRGRRGHAXXXXXXX---XXPQESTATRRGPHKRKSPASSAYPRSASSHQLMQLKVCYC 247
BLAST of mRNA_Ecto-sp6_S_contig103.904.1 vs. uniprot
Match:
A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)
HSP 1 Score: 202 bits (515), Expect = 5.820e-58
Identity = 99/115 (86.09%), Postives = 103/115 (89.57%), Query Frame = 1
Query: 1 MDQDGVFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEVIFQTACRMCLNIKSCLREGHKLIDWRPTFA-GGRVAG 342
MDQDG+FLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELT SHRQCVKPDQAITIYKLHDHETNEDYLEFDEE+IFQTACRMCLNIKSCLR G + TF GG+ AG
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGKV---FSATFGKGGKSAG 112
BLAST of mRNA_Ecto-sp6_S_contig103.904.1 vs. uniprot
Match:
D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)
HSP 1 Score: 118 bits (295), Expect = 1.370e-26
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 1 MDQDGVFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEVIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVA 339
MD DG L++ CN C NK + C+ R+HN R++ V+ DEL HRQCVKPDQ +TI+KL D T E+ +E+ ++IFQ C C+++K+C+ GH+L DW P GR +
Sbjct: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRAS 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.904.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 4.34e-136 / Id = 94.05 Expect = 5.82e-58 / Id = 86.09 Expect = 1.37e-26 / Id = 45.13 Sequence D7G0U1_ECTSI A0A6H5LER2_9PHAE D7G0T9_ECTSI
Match Name E-value Identity Description
D7G0U1_ECTSI 4.340e-136 94.05 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5LER2_9PHAE 5.820e-58 86.09 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7G0T9_ECTSI 1.370e-26 45.13 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 759 Hectar predicted targeting category other localisation Exons 6 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-23_001500.1 Cds size 759
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348741.4114578-CDS-Ecto-sp6_S_contig103:225234..225264 1682348741.4114578-CDS-Ecto-sp6_S_contig103:225234..225264 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 225235..225264 - 1682348741.42221-CDS-Ecto-sp6_S_contig103:225396..225480 1682348741.42221-CDS-Ecto-sp6_S_contig103:225396..225480 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 225397..225480 - 1682348741.4318037-CDS-Ecto-sp6_S_contig103:225740..226101 1682348741.4318037-CDS-Ecto-sp6_S_contig103:225740..226101 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 225741..226101 - 1682348741.4414732-CDS-Ecto-sp6_S_contig103:226707..226826 1682348741.4414732-CDS-Ecto-sp6_S_contig103:226707..226826 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 226708..226826 - 1682348741.4501529-CDS-Ecto-sp6_S_contig103:228197..228302 1682348741.4501529-CDS-Ecto-sp6_S_contig103:228197..228302 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 228198..228302 - 1682348741.459715-CDS-Ecto-sp6_S_contig103:230759..230819 1682348741.459715-CDS-Ecto-sp6_S_contig103:230759..230819 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 230760..230819 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.904.1
>prot_Ecto-sp6_S_contig103.904.1 ID=prot_Ecto-sp6_S_contig103.904.1|Name=mRNA_Ecto-sp6_S_contig103.904.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=253bp
MDQDGVFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQC back to top mRNA from alignment at Ecto-sp6_S_contig103:225235..230819-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.904.1 ID=mRNA_Ecto-sp6_S_contig103.904.1|Name=mRNA_Ecto-sp6_S_contig103.904.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5585bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:225235..230819- (Ectocarpus species6 EcLAC_371)ATGGACCAGGATGGCGTGTTCCTCATGCTCAAGATGTGCAACGGCTGCAG
CCACAACAAG GTGTGTGAGAGAGGCAGGCTCACACGGTTAACCCTTGTAC
GCCCGCCAATGTTTGTCTTTTCGTCTTTCGACATCCTGTCTCACCGTGTC
TCCCCTGCTGGCACGCACCCTCGGCGCTTGTTTTCGTTGTTGTGGTGGCA
TAGGCCGTACCCACCAGCAGGGTAAGCTCAGCCTGTAGTCCTGACCGGAG
GTCGACTTCGAATGGTGTCGATGGTCAATGTTACGATGGGGTCGCGTTTA
CCTGTCGAACACACGTTTCGAGGAATGACCCTTTGGTGCCGAGGGCGAGA
ATCGGGCACACACACCAGACGGGCAGGCAGCTCGGGGAGACTGATCGATC
CCTTTCTCATGTCTCGGCACTCCTCTCTACCGACACACACCAGTAGTCTA
ATGTCCTCGCACTACTGAGGCAGAGGACAACGACAATTAGGATGCTCTCT
CGGTGCGAATGGCGAGAACGACGACACTGCCGCTGCTGCTGCTGCTCGTT
CTATAGCAGTTTATGCATATCACACTTTTTAAAGCGGACAAGCTGCCCGA
TTGTGCCGTGCTGCCTCGTCGATTGTACCCCGCCTCCGCCTCGCTTCGCT
CGACAACACACAGCAGCAGTAGGGATCACACAAACCTAGAAGAGGGGGGA
GAGCTGAGCTTCATGTGTTGCTCGCTCCTTCCTATGCCGAGAAGTCGATG
GGGAGGGTTGTCCTGTTGAGACTCGAACTGCTGCCGCCGAGTCCCTCGAT
CGACCAATAAAACACCCTCTGTTGCCTCCAATTAAACATAACGCCGGCCG
TCGCAGCCGTCGAGGTTCAACGCCAACACGGTTATCATCTCACCCCTTCC
CAACCAATCCTGTACGCGAGCCTGCCCTAGAGGTCTGGCCGGTGAAGATG
GTCGGCCTAATGCTGTTGTTGTGTGTGGACGCGATGCGCTGAGCCGGGCA
GCGGCAGCGGTCAAATTCATCGTCAACCCTCCCATCCCCCACGCACGCGC
TCGTCGGACAATCGTCCAAAAACAAAATCGAGCACGTTCATCAAGAGTAC
ATTCGGTACTCCACTCACTGAAAAGACTCCGCCACATCCCGTTCGACTGT
GGGTATATCTCGAATGGGTAGTCTTTCTGTATGTTTTTTTAATATTCCTT
AATACGGTATGTACTTGGAGTACAGTAGTTGTGTGGCCGGATTCGCGTGT
TTGCTAATGAAGCCCGGCGTTAGGAGTGCAAACCTATATCGCATGGTGTT
GGCCTATCATCACGTCGCAAGATGGCGTACTTTTGAAATGACGCTACAAG
CGAGCTGCTTCCAAAAACATCAGGTTGTAGACTAGGCCTGTAGACTACAA
TGAGTAGCACACCCGTCTCCGGTAAGGCGATGTATTCAAAAACAGCAGTC
AAGCAGCACCCTGCTTCCTATTCATGGACGAAAGAGACCACCAGCTAGGA
AGATTTTTTTTTTTTTTTCAAAGTACAATTTACGGCGGGGTGAAGGACAC
CGCCCCGGCGTTGTGTCGCGTGGACCCACCTACATAGTCTTGCCAGGGGA
GGGGTCCACACACACCCTTTTTTCCATGTGGCATGTACCATGCTGCAGTA
CCAGTGCTTTTGCTTTTGTTCAAGTCACCAGGGTCTGGTTATTCCCATCT
TAGCCTCGCTCTTTCAAAGGCAGGAGGGGAGGGTAGGGGTGACTCAGGGA
AAGGAACCCTTGTGTGTGACCACGGGCCGGAGCTCCTAGCTACCCGGCAG
TGATGAGAGCGAAACACAAAAACGTTCGTCAATCGTCCGGGATTGGAGAT
CTAAACATTCCGCGACGGTACATACCTGCCTATCAAGAGGGTGGCCCTTG
GCTTAGACGGGAGGCCCTTCGAAACCATACTCTTTCTTCACAAGACCCTT
TGTTTGGAGGTTTGAAACAACGAAGACCGCACGAGCGACAGCGAGGGTAC
CTCTCATTTCGCGTGTAACGCATGTTACGGGTTATAGGATTGAACCTGTA
CGAGCCATCAACGCGAAACGCACGGCATCGCTCCACTTTCTGGGCAATGA
GGGACGACTGCTGCCCGCTCCCTTCGACGGCGGTCTTTGCGTGGCGTCTG
CACAACACATGACGGGAAGGCCGGTTGTTTAACATTCCCAATCGATGGCT
TCTCAGGGTTAACTGTAAGAGTGTTGCCACCACCCCATTATGAAGGCGAT
TGTGCGTGTGCTGGTTGCCTGAACTCGTTTCGATGGGCTTATTATCTGCT
CTCATTGCTGTTTAGAAAAAGACACATGTAATCGCAGAAAGGACTTGGTA
CGGCCGTTCGTGATGTAGCCACAGCATTTTCTACGATTTCCACAGATGAT
TGTTATTTTTTCGACCGCCCCTGTTCGTCTTTCTTTCTTTCTTCTTTTTG
CTCTCGACTGCGTATTCATCTTTATTTATTTCTGTTTTCGACCACGGCGG
CGGCGGCGCCCTCGCAGGGGAGCTGGAAGAAGTGCATGTCAAGGAGGCAC
AACCCCAGGATGTCCACGGTCCGTGAGGACGAGCTGACGTATAGCCACCG
ACAGTGCGTCAAGCCGGACCAG GTTAGCAACTCGTCGTTTCATTTCCACG
TTCCATGTCCTCCTTAGCAGCTTGGTTTTGAAGCAGTTTTTTTTAGCTCA
GGGCTGGCTATTTTGCCCTAATGTAGCCGTGTTCTCTTTCAGCTTTGTCT
TGAAGCAAGAGAGTGAGCTCGTCGGGGCTGGTTTTTTGTCTTAATGTACC
GGGTTCTATTAACAGCCCTGTCTTGAAGCAGTTCCGCTCTTACACAGAGC
TAGTCTGGGCTGGATAATTTTTTGGTCTTGTCGTCCGCTTTTAGAGAGCT
AGCTGGTTGGGGCTGCGGTTCTTTGTTGTGTTGTCGTGGCTCGGCTTTTT
CCGGCTCGGTTCTCTTTCACATTTTTTTTGTTTTCTTGCAGTTAGTTCCG
TGTGGAGAGCTCGACGGGGGCGGTCATTTTGTCTCTTCGTGTGGGCCGGG
TTGTTTCACCCGCTCGTCGCCGGGTGCTCCGGCTGGGGCGTCGCGGCTCA
AGCACCCTAGACCTGTCGGCCACGAGAACCTGGGCTACTGACTGCTGTTC
GTGGAGCACGCCTACCCACCGCCCCCCCCGACATACCCTTGCATACACTC
CCCCCATCAGCACTTTGCTGCACTGCTGCTGTAGAGCAACATGGTACCAT
GGAGGGGACTGTTCGGCGCCGGTTTATTGTATTGTGCCGGTATTTTCGGC
GGGCACGCACCGAACTACCAGGTCATGCCGTGCTTTGAATAGTGCCGGTG
TCCGGCATCGTGCCGGTGTCCGGTATCGTGCCTATGTCCGGTATAGTGCC
GGTGTCCCGCATAGTGCCGGTGTCCCGCATAGTGCCGGTGTCCGGTATAG
TGCCGGTGTCCCGCATTGTGCCGGTGTCCCGCATTGTGCCGGTGTCCCGC
ATAGTGCCGGTGTCCCGCATAGTGCCGGTGTCCGGTTTTGTGCCGGGCCA
TTCTCTGGGCACATGTACCGGCTCCGAACAGCTCCCCACACTGTAGTCGT
TTTTCGAAGCTTGTCCCGGTCCCCGGACCGCAGTTCGGTCGATTTTTTTT
ATTGCCCTCCTGTCAAAATTGGTGCTGCTTGCTCGTTCTTTTCGGATCCG
TGGATCCTCGAAATGACTCCCTTGAAAATATACAGCCCAGGTGTATGGCT
TCTACGATGCCGATGTTTTGTACGTGGAAGCTTGCTGAGGCAGCTGTAAT
TTTGCCGTCCCCTGGCTTTGACGCTTAGGCTTTTCTCACGACTACACGGG
GTGTGCCAGGTGTAGGCCTTCTACGAAGCCGATTTTTTTACGTACAAGCT
TGCTGAGGCAACTTTGATTTGACGCGACTCTCGCGCCTTCTCAGCCTGCG
CTCTTTCCCGCTATGCCGTCCCCTATCCCCTACCCCACGCCAGGCCATCA
CCATCTACAAACTCCACGACCACGAGACGAACGAGGACTACCTGGAGTTC
GACGAGGAGGTTATCTTTCAGACGGCGTGCCGCATGTGTCTCAACATCAA
GTCCTGCCTCAG GTGCGAAAAAAGACATGCGCGCTGGACGCCGTGCGGAT
GTAGCCGGGGTGTCTGTGCGGTTTTAGGGTTGGGAATAGTCAAGGTAAGG
TTGGGACCGCTTAGAAGAGTCAAGGCAACAACAACAAAAACAACAAAAAC
AACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCG
TTGTATGCAATTATCAACAAGAACTGCTGTCGGTGGGTAGATCGCTCTAG
GTTGTCCCGGCCCGATCTTGCGCAATATATCGTAGGACGATATCGGTTCG
CCAGATCGTTATGGTACTCAATCCACATTCCAAAAAGTTTTTCTCGGACA
AAGGCGACCCCTCGGATCAACCATCGTAGTCGATTTTTTTTTTCGAATTA
TTTAGCCAGGCAAATGTACCCGATTTCTCTGATCCTGCGTTGAGCCTGAT
AATCCTCCTAGTTCGTCGTCTTTGGCTCTGCTGGAAATCTTACGTTGGGC
CTGATAGCCTCCAATTTGGCTGCTTTGCCTCTTCCCTCTTTCTTTTTTTT
GTCCCTCCCCCTTTTTGTTCTTCACTCGCTGTTGTCGTGGTCGTTTTTTG
TCATTGCTTTGCTCTCAGGGAGGGACACAAGCTCATCGACTGGAGGCCAA
CCTTCGCCGGAGGCAGGGTGGCCGGCTCCTCGCACCCCCCCCCCAGCCCC
CCCGCCTCTCCCCCCGCGCCTACGCCGCCGCCGCCGCCGCCGCCGCCCGC
GGACCGTGGCGGTGGAGCGAGGAGGGGTGGCGGGGGCCCCGGCAGGGCGC
CGAGGAGCGCTAGAGGGAGGTCAGCAAGCACCTCGGTAGTGGACGACGAG
ATGGAGGTTGTCGAAGATTATGGTGATGGTGGTGGTAGTGGCCGGAAGGT
GTTCCCTGCGGGCGGAAGGGGGCGGAAGGGACGTACTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGGCGTTGCTCCGCAG GTGTGTTGTTGTGCCTGTCAG
GTGTTTTGGGTGTTTGTGTTTAGGTTTCTTGACTTGGAAACCTGTGTGTG
TGTGTGTGTTTTTTTGTATCTCCTACTTTTTTCTGCTCGAACCCCCATGA
GTTGTGTTGAGTTCTCTCTCTCTCGTTCGATCTAGTCCCGTGAAACCATG
ACAGTTACCAAGACATCATTTGATCCCTGTTTTTATGCCCTGCCCCTCCC
CCCGCCGCTTTATTTTCGCTCCATGTTTGCTTGGAAAAGGAGTCGACGGC
GACGCGTAGGGGTCCTCACAAGCGCAAGTCGCCGGCCTCTTCCGCGTACC
CGCGGTCCGCGAGCTCGCATCAG GTGACCATGCCGTGCACACAACCATCG
TTTGTTTGTTTTTCTAGTCTTTCCCCTCCCCTTTTTGGAAAATTGTCATG
CTGGCCTTTGTCCTCACAATGCTCTAAACAGCGACCGGTCTGTGTTTAAC
TCTAGCTAGTGCAGCTGAAGGTGTGCTATTGTTAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:225235..230819-
>mRNA_Ecto-sp6_S_contig103.904.1 ID=mRNA_Ecto-sp6_S_contig103.904.1|Name=mRNA_Ecto-sp6_S_contig103.904.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:225235..230819- (Ectocarpus species6 EcLAC_371) back to top