mRNA_Ecto-sp6_S_contig103.899.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.899.1
Unique NamemRNA_Ecto-sp6_S_contig103.899.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: D7FXU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU8_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 2.380e-122
Identity = 177/190 (93.16%), Postives = 181/190 (95.26%), Query Frame = 1
Query:    1 MVYATCIDGSVVHTTVTGTPPGDLEDRTIDPVSLTRRTLLDANPRCISKVEGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV 570
            MVYAT IDGSVVH T TGTPPGDLEDRTIDPVSLTRRTLL+A PRC+SKVEGLRAEIMEEREEAEK AVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTN GDLEVSVDG +VLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGG+Y WGIQAREPLAQVVPTTICF DKYPDV
Sbjct:    1 MVYATSIDGSVVHATATGTPPGDLEDRTIDPVSLTRRTLLEAIPRCMSKVEGLRAEIMEEREEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNTGDLEVSVDGFLVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGEYAWGIQAREPLAQVVPTTICFSDKYPDV 190          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 2.850e-110
Identity = 167/190 (87.89%), Postives = 175/190 (92.11%), Query Frame = 1
Query:    1 MVYATCIDGSVVHTTVTGTPPGDLEDRTIDPVSLTRRTLLDANPRCISKVEGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV 570
            MVYAT IDGSVVH T TGTPPGDLEDR+IDPVS TRRTLL+ANP+ +S VEGLRAEI+ E EEAEKAAVEG+GL +SKMVTVLGFLPFGKHGFRRRRARE AAAHLGEA LSVTNKGDLEVSVDGSIVLRKSGPSWFGFR+KDSTYEVRVTEDGV VSRGGKYDWGIQAREPLAQVVP T CFCD YPDV
Sbjct:  313 MVYATSIDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRKSGPSWFGFRKKDSTYEVRVTEDGVVVSRGGKYDWGIQAREPLAQVVPATTCFCDMYPDV 502          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 4.200e-85
Identity = 126/133 (94.74%), Postives = 129/133 (96.99%), Query Frame = 1
Query:  172 MEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV 570
            M+ER+EAEK AVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREH AAHLGEATLSVTNKGDLEVSVDGSIVLRKS PSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICF DKYP+V
Sbjct:    1 MDERDEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRKSRPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFFDKYPNV 133          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: A0A6H5JQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ9_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 8.990e-84
Identity = 137/171 (80.12%), Postives = 146/171 (85.38%), Query Frame = 1
Query:    1 MVYATCIDGSVVHTTVTGTPPGDLEDRTIDPVSLTRRTLLDANPRCISKVEGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQARE 513
            MVYAT ID  VV  T TGTPPGDLEDRT+DP S TRRTLL+AN + +S VEGL+AEIM E  EAEK  VEGRGL KSKMV VLGFLPFGKHGFRRRR REHAAAHLGEATLSVTNKGDLEVSVDGSIVL KSGPSWFGFR+KD TYEVRVTE  V VS+GG +DWGIQAR+
Sbjct:  140 MVYATSIDCFVVRATATGTPPGDLEDRTVDPASQTRRTLLEANTQRMSIVEGLQAEIMAETAEAEKETVEGRGLKKSKMVAVLGFLPFGKHGFRRRRPREHAAAHLGEATLSVTNKGDLEVSVDGSIVLGKSGPSWFGFRKKDFTYEVRVTEGVVMVSQGG-HDWGIQARK 309          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: A0A6H5K6E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E6_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 3.740e-81
Identity = 137/190 (72.11%), Postives = 145/190 (76.32%), Query Frame = 1
Query:    1 MVYATCIDGSVVHTTVTGTPPGDLEDRTIDPVSLTRRTLLDANPRCISKVEGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV 570
            MVYAT IDGSVVH T TG P GDLEDRTI+ VS T              VE                A+EGR L KS MVTVLGFLPFGKHGFRRR AR+HAAAH+GEATLSVTN+GDLEVSVDG IVLRK GPSWFGFRQK STYEVRVT+DGVAVS+GGKYD GIQAREPLAQVVPTTICFCDKYPD+
Sbjct:  227 MVYATSIDGSVVHATATGRPSGDLEDRTIETVSPTH-------------VE----------------AIEGRILKKSNMVTVLGFLPFGKHGFRRRPARKHAAAHIGEATLSVTNEGDLEVSVDGFIVLRKPGPSWFGFRQKYSTYEVRVTKDGVAVSQGGKYDLGIQAREPLAQVVPTTICFCDKYPDL 387          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: A0A6H5LDV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDV1_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.450e-59
Identity = 100/174 (57.47%), Postives = 126/174 (72.41%), Query Frame = 1
Query:    1 MVYATCIDGSVVHTTVTGTPPGDLEDRTIDPVSLTRRTLLDANPRCISKVEGLRAEIMEEREEAEKAAVEGRGLTKS-KMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPL 519
            M+YA+ IDGSV+H T  G  P D +D     V   +  LL AN R +    GLR+EI E   E  KAA+EGR L K  K+ T++GFLPFGK+GFR RRAREHA AH+GEATLS+T KG+LEV+VDG  VLRKSGPSWFGFR+ DS+YE+R TE+G+ +SR GK+DW ++A + L
Sbjct:   12 MLYASPIDGSVIHATANGKAPHDKDDDMTGQVPHGKHVLLKANSRKMLNALGLRSEIFEANLEKRKAALEGRELPKEGKVDTLMGFLPFGKNGFRGRRAREHAEAHMGEATLSLTKKGNLEVAVDGMTVLRKSGPSWFGFRKSDSSYELRATEEGIVISRQGKFDWSVKAGDIL 185          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 8.830e-58
Identity = 97/152 (63.82%), Postives = 119/152 (78.29%), Query Frame = 1
Query:   61 PGDLEDRTIDPVSLTRRTLLDANPRCISKVEGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREP 516
            P D +  T  PV    RTLL ANPR +SKV  LR+E +  R E ++AA+EGR L + K+ T++GFLPFGKHGF RRRAREHA AH+GEATLS+T KG LEVSVDG +VLRKSGPSWFGFR+ D +YE+RVTE+GV +SR G YDWGI+A++P
Sbjct:  339 PRDADGNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRKSGPSWFGFRRTDRSYELRVTEEGVVISRRGMYDWGIKAQDP 490          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: A0A6H5L4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D4_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.110e-56
Identity = 98/172 (56.98%), Postives = 124/172 (72.09%), Query Frame = 1
Query:    1 MVYATCIDGSVVHTTVTGTPPGDLEDRTIDPVSLTRRTLLDANPRCISKVEGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREP 516
            M YA+  DGSV+  T  G  P D +  T  PV+   RTLL ANPR +SKV  LR+E +    E ++ A EGR L + K+ T++GF+PFGKHGF RRRAREH  A++GEATLS+TNKG L VSVDG +VLRKSGP  FGFR+ D +YE+RVTE GV +SR G YDWG++A++P
Sbjct:  249 MAYASPTDGSVILATAIGNAPRDADGNTTGPVTQNNRTLLTANPRKMSKVRALRSENIVAGLEKKRVAREGRTLREGKLATLMGFMPFGKHGFLRRRAREHVEAYMGEATLSITNKGGLGVSVDGIVVLRKSGPYCFGFRRTDRSYELRVTEAGVVISRRGMYDWGLKAQDP 420          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 5.780e-54
Identity = 96/171 (56.14%), Postives = 119/171 (69.59%), Query Frame = 1
Query:    1 MVYATCIDGSVVHTTVTGTPPGDLEDRTIDPVSLTRRTLLDANPRCISKVEGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQARE 513
            MVYA   DGSVV  T TG  P D E R    +   R TLL AN R ++K E  R+EI+  R   + A  EGR L KSKM T +GFLPFGK GF  RRAR+ A AHLGEATL +T+KG LEVSVDG++VLRK GPS+FGFR+ D +YE++VTE+G+ VSR G + WG++A +
Sbjct:    1 MVYAAPADGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRKKGPSYFGFRRTDPSYELQVTEEGIEVSRRGDFVWGVKAED 171          
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 7.430e-54
Identity = 84/126 (66.67%), Postives = 106/126 (84.13%), Query Frame = 1
Query:  139 ISKVEGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREP 516
            +SKV  LR+E +  R E +KAA+EG+ L + K+ T++GFLPFGKHGF RRRAREHA AH+GEATLS+T KG LEVSVDG++VLRKSGPSWFGFR+ D +YE+RVTE+GV +SR G YDWGI+A++P
Sbjct:    1 MSKVRALRSENIAARLEKKKAALEGQTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRKSGPSWFGFRRTDRSYELRVTEEGVDISRRGMYDWGIKAQDP 126          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FXU8_ECTSI2.380e-12293.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMM4_ECTSI2.850e-11087.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T0_ECTSI4.200e-8594.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQZ9_9PHAE8.990e-8480.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6E6_9PHAE3.740e-8172.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDV1_9PHAE1.450e-5957.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9B0_ECTSI8.830e-5863.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4D4_9PHAE1.110e-5656.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTM0_ECTSI5.780e-5456.14Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G9A5_ECTSI7.430e-5466.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:194408..195245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size573
Hectar predicted targeting categoryother localisation
Exons2
Cds size573
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348741.0434444-CDS-Ecto-sp6_S_contig103:194407..1946231682348741.0434444-CDS-Ecto-sp6_S_contig103:194407..194623Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 194408..194623 -
1682348741.0527713-CDS-Ecto-sp6_S_contig103:194888..1952451682348741.0527713-CDS-Ecto-sp6_S_contig103:194888..195245Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 194889..195245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.899.1prot_Ecto-sp6_S_contig103.899.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 194408..195245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.899.1

>prot_Ecto-sp6_S_contig103.899.1 ID=prot_Ecto-sp6_S_contig103.899.1|Name=mRNA_Ecto-sp6_S_contig103.899.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=191bp
MVYATCIDGSVVHTTVTGTPPGDLEDRTIDPVSLTRRTLLDANPRCISKV
EGLRAEIMEEREEAEKAAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRARE
HAAAHLGEATLSVTNKGDLEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRV
TEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV*
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mRNA from alignment at Ecto-sp6_S_contig103:194408..195245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.899.1 ID=mRNA_Ecto-sp6_S_contig103.899.1|Name=mRNA_Ecto-sp6_S_contig103.899.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=838bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:194408..195245- (Ectocarpus species6 EcLAC_371)
ATGGTTTACGCCACGTGCATCGACGGCTCCGTCGTGCACACCACGGTCAC CGGAACGCCGCCGGGGGACCTCGAGGACCGGACCATCGACCCGGTGTCGC TGACGAGGCGGACCCTGCTAGACGCCAACCCGCGATGCATATCGAAGGTC GAGGGGCTACGAGCTGAAATCATGGAAGAGAGAGAGGAGGCGGAAAAGGC GGCGGTAGAGGGCCGGGGCCTTACGAAGTCGAAGATGGTCACTGTCTTGG GCTTTCTGCCCTTCGGAAAGCACGGCTTTCGTCGGCGACGAGCGAGGGAG CACGCGGCTGCGCACTTGGGCGAGGCAACCCTCTCCGTCACGAACAAGGG AGACCTGGTACGTTGGGGGGCGGCAAGACTTGTAGCTGTGGTAGCAGGAT GCGAATCATGCGAGATCATGTTTCTGGCATTGTTCCTCAGGTCGTATTAT GATTAGATGCAAGAGGCCAGTTTCTCTCGAAACATCCGGCAAACATCGTG AGAAAAGAATCGCAGGCACACCGAGTCTCCCCACTTGACATCTACAGAAA GCCATGTTCCCTATTTAACATCACCCCCCCTCTTTTTCACGCAACCGTTG CAATGTATGTGCACCTGCGCAGGAGGTCTCGGTGGACGGATCCATCGTCC TTCGGAAGTCCGGGCCTTCCTGGTTCGGCTTTCGCCAGAAAGACTCCACG TACGAGGTGCGCGTCACGGAGGATGGGGTTGCCGTGTCGCGAGGCGGCAA GTACGACTGGGGCATCCAGGCCCGGGAACCTCTAGCGCAAGTCGTCCCAA CCACCATTTGTTTTTGCGACAAGTACCCAGACGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:194408..195245-

>mRNA_Ecto-sp6_S_contig103.899.1 ID=mRNA_Ecto-sp6_S_contig103.899.1|Name=mRNA_Ecto-sp6_S_contig103.899.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:194408..195245- (Ectocarpus species6 EcLAC_371)
ATGGTTTACGCCACGTGCATCGACGGCTCCGTCGTGCACACCACGGTCAC
CGGAACGCCGCCGGGGGACCTCGAGGACCGGACCATCGACCCGGTGTCGC
TGACGAGGCGGACCCTGCTAGACGCCAACCCGCGATGCATATCGAAGGTC
GAGGGGCTACGAGCTGAAATCATGGAAGAGAGAGAGGAGGCGGAAAAGGC
GGCGGTAGAGGGCCGGGGCCTTACGAAGTCGAAGATGGTCACTGTCTTGG
GCTTTCTGCCCTTCGGAAAGCACGGCTTTCGTCGGCGACGAGCGAGGGAG
CACGCGGCTGCGCACTTGGGCGAGGCAACCCTCTCCGTCACGAACAAGGG
AGACCTGGAGGTCTCGGTGGACGGATCCATCGTCCTTCGGAAGTCCGGGC
CTTCCTGGTTCGGCTTTCGCCAGAAAGACTCCACGTACGAGGTGCGCGTC
ACGGAGGATGGGGTTGCCGTGTCGCGAGGCGGCAAGTACGACTGGGGCAT
CCAGGCCCGGGAACCTCTAGCGCAAGTCGTCCCAACCACCATTTGTTTTT
GCGACAAGTACCCAGACGTTTGA
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