mRNA_Ecto-sp6_S_contig103.897.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.897.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE) HSP 1 Score: 236 bits (602), Expect = 1.880e-69 Identity = 123/134 (91.79%), Postives = 124/134 (92.54%), Query Frame = 1 Query: 1 KRPRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEANPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVLDRKYRGPAVAAGPGPEDAARMAAASGSLPRQDAA 402
KRP R SGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEA PGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVLDRKYRGPAVA PGP DAARM AAS SLPR + A
Sbjct: 849 KRPTRISGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEATPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVLDRKYRGPAVATEPGPGDAARMTAASASLPRHNGA 982
BLAST of mRNA_Ecto-sp6_S_contig103.897.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.700e-21 Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 Query: 1 KRPRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEANPGRRR 150
KRPRRKSGLRPGRGWEIGAAGGGGF LEES GYDLCLPVGVVEANPGRRR
Sbjct: 645 KRPRRKSGLRPGRGWEIGAAGGGGFLLEESEGYDLCLPVGVVEANPGRRR 694 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.897.1 >prot_Ecto-sp6_S_contig103.897.1 ID=prot_Ecto-sp6_S_contig103.897.1|Name=mRNA_Ecto-sp6_S_contig103.897.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=150bp KRPRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEANPGRRRback to top mRNA from alignment at Ecto-sp6_S_contig103:182726..183175+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.897.1 ID=mRNA_Ecto-sp6_S_contig103.897.1|Name=mRNA_Ecto-sp6_S_contig103.897.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:182726..183175+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:182726..183175+ >mRNA_Ecto-sp6_S_contig103.897.1 ID=mRNA_Ecto-sp6_S_contig103.897.1|Name=mRNA_Ecto-sp6_S_contig103.897.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:182726..183175+ (Ectocarpus species6 EcLAC_371)back to top |