mRNA_Ecto-sp6_S_contig103.895.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: D7FXV1_ECTSI (Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV1_ECTSI) HSP 1 Score: 553 bits (1426), Expect = 5.360e-198 Identity = 281/289 (97.23%), Postives = 284/289 (98.27%), Query Frame = 3 Query: 45 IMATPARLLSAFSLCLAVCGKPVAAFLPGSCRVSGEVLTSGNSNCRVCTRRLQAFAPRQWPPLRRRREPRWCLSAAEDDEEDEELEDATGKGVYVATETLLDDPSHMERILAAMAELAPPVAPLEGVFKTAVSHHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAGMRLELIEVPAVLEPDDKALDLAADMTTTGLNHVAFDVGPAIEAEGLDGLKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 911
+MATPARLLSAFSLCLAVCGKPVAAFLPGSCRVSGEV TSGNSNCRV TRR QAFAPRQWPPLRRRREPRWCLSAAEDDEEDEELED TGKGVYVATETLLDDPSHMERILAAMAELAPPVAPLEGVFKTAVSHHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAGMRLELIEVPAVLEPDDKALDLAADM TTGLNH+AFDVGPAIEAEGLDG+KGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW
Sbjct: 1 MMATPARLLSAFSLCLAVCGKPVAAFLPGSCRVSGEVPTSGNSNCRVGTRRQQAFAPRQWPPLRRRREPRWCLSAAEDDEEDEELEDVTGKGVYVATETLLDDPSHMERILAAMAELAPPVAPLEGVFKTAVSHHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAGMRLELIEVPAVLEPDDKALDLAADMRTTGLNHMAFDVGPAIEAEGLDGMKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 289
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 246 bits (629), Expect = 1.580e-74 Identity = 150/277 (54.15%), Postives = 156/277 (56.32%), Query Frame = 3 Query: 423 VFKTAVSHHCALRTSNIVRAMKFYSLLGMNE-------------------------------------------------------------------------AARFRAGNARCAFLEGAGMRLELIE-----------------------------------------VPAVLEPDDKALDLAADMTTTGLNHVAFDVGPAIEAEGLDGLKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 911
VFK AVSHHCALRTSNIVRAMKFYSLLGMNE AARFRAGNARCAF EGAGMRLELIE + +L DDKA+DLAADM TTGLNH+AFDVGPAIEAEGLDG+KGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQ+IFDLAFVMDADGVLLELVHKKDTLDIDMPQAW
Sbjct: 207 VFKLAVSHHCALRTSNIVRAMKFYSLLGMNEVISLPRRGSTPTFSSVIDVQLDVAKPGVWCSSPRPWWDLCLTRTTPHPRWLPSSSFLLLSIPNARWSLSNAGQAARFRAGNARCAFFEGAGMRLELIESEPHPTTRIGHLRHSSGGEYPSQRPLQALSNLSQKCNLTISLVNLLRLDDKAVDLAADMRTTGLNHMAFDVGPAIEAEGLDGMKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQEIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 483
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: A0A7S3YC63_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC63_HETAK) HSP 1 Score: 139 bits (349), Expect = 1.030e-35 Identity = 81/185 (43.78%), Postives = 104/185 (56.22%), Query Frame = 3 Query: 444 HHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAGMRLELIEVPAVLEPDDKALDLAAD--MTTTGLNHVAFDVGPAIEA----EGLDGLK-----------------------GFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 911
HH A++T NI A+KFYSLLGM E RF+ G AR A++EG G+RLELIEVP + P+ +A DL+AD + GLNH A DV A A E +G K FL LN +SE AF SVRL + PY Q I ++FD+AF+ D DG L+EL+ TL+ +M W
Sbjct: 58 HHYAIKTKNIFNALKFYSLLGMEEKVRFKTGAARAAWIEGVGVRLELIEVPEFMAPEGRAADLSADANVAVLGLNHAALDVTAAARACLLREQREGEKEEDRNENGAAVSRKRGEAGAEIWAFLRALNAKSEAAFQKSVRLAIRPYRQMIMNEVFDIAFISDPDGTLIELLFHVATLEHEMLPDW 242
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: A0A7S2W1M9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1M9_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.500e-35 Identity = 80/166 (48.19%), Postives = 103/166 (62.05%), Query Frame = 3 Query: 444 HHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAG--------MRLELIEVPAVLEPDDKALDLAAD--MTTTGLNHVAFDVGPAIEAEGLDGLKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 911
HH ++ N+ R+M FYSLLG E ARFRAG AR A+L+ AG RLELIEVPA L+P + +DLAA + TGLNHVA D G GL+ L +LN +SE F SV+LV+ PY+Q IGQ++++LAFV D DG L+EL+ K + M AW
Sbjct: 43 HHTGIKVQNLTRSMAFYSLLGYEEIARFRAGPARAAWLQPAGGESQAPSSQRLELIEVPAGLDPPQRQIDLAAPEYLGQTGLNHVAVDASDWALLAG--GLREVLVQLNLKSEAQFQRSVKLVLPPYQQIIGQEVYELAFVSDPDGTLIELLAWKGEVPRPMEPAW 206
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: A0A1Z5JF84_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF84_FISSO) HSP 1 Score: 124 bits (310), Expect = 5.210e-30 Identity = 71/164 (43.29%), Postives = 96/164 (58.54%), Query Frame = 3 Query: 444 HHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAGMRL---ELIEVPAVLEPDD-----KALDLAADMTTTGLNHVAFDVGPAIEAEGLDGLKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 911
HH AL+T NI A++FYSL G A RFRAG AR A+L RL ELIEVP + ++ +A+DL G NHVA DV I G L +L +LNR S D F S+R+ V P +Q IG+ +++LAF+ DADG L+E++HK+ + +M W
Sbjct: 66 HHTALKTRNITTAIEFYSLFGYQVACRFRAGPARAAWLALTSSRLARLELIEVPDYILREEFGTRARAIDLMQRPEFLGYNHVAVDVTEQILHAGFMNLNEWLDQLNRTSIDRFQRSLRIAVKPRQQMIGRGVYELAFLYDADGCLIEVLHKQSEISQEMQSGW 229
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: K0SD06_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SD06_THAOC) HSP 1 Score: 109 bits (273), Expect = 3.370e-24 Identity = 72/198 (36.36%), Postives = 106/198 (53.54%), Query Frame = 3 Query: 402 PVAPLEGVFKTAVS-HHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFL---------EGAGMRLELIEVPAVL--EPDDK---ALDLAADMTTTGLNHVAFDVGPAIEAEGLDG-------------LKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 911
P P + +AV+ HH A++T +I A+KFYSLLG +F AG AR A+L R+ELIEVP + EP+ K A+DL GLNHVA DV I DG L+ ++ +LN S + FG +VR+ + P ++ +G++++++AFV DADG LLEL++ TL ++ W
Sbjct: 83 PAPPGDNPLTSAVACHHAAVKTRDIENAIKFYSLLGFEVETKFVAGPARAAWLLHKSSKRHGNSHQSRIELIEVPDYVLNEPEGKVRRAVDLTRREDLLGLNHVALDVTGCIPRPSDDGGAAADGTACALYQLREWMDDLNDLSVETFGRTVRVALEPTKRIVGREVYEMAFVYDADGTLLELLNHSGTLGQEVESGW 280
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: A0A7S3PZA0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZA0_9STRA) HSP 1 Score: 110 bits (276), Expect = 6.600e-24 Identity = 71/188 (37.77%), Postives = 98/188 (52.13%), Query Frame = 3 Query: 444 HHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAGM------------------------RLELIEVPA-VLEPDD----KALDLAADMTTTGLNHVAFDVGPAIEAEGLD---GLKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 911
HH A+RT NI A+KFYSL G +FRA +AR A+L A + RLE+IE+P VL + +A+DL + GLNH A DV P I D GL FL ++N++S FG ++R+ + P +Q IG +F+LAFV DADGV++EL+ LD + W
Sbjct: 56 HHVAIRTRNIENAIKFYSLFGFKVETKFRAASARAAWLSNAMLANGNKNDEQSNDEVLKGQSYNIASRLEIIEIPQHVLNEKEGTIKRAIDLLQNEAILGLNHYALDVTPYIHHLAKDEYYGLDQFLLQINQESLKMFGKTLRVAMQPKQQVIGSQVFELAFVYDADGVVVELMRYIKELDQKVESGW 243
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: UPI000EFC050B (VOC family protein n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI000EFC050B) HSP 1 Score: 93.2 bits (230), Expect = 1.490e-19 Identity = 54/146 (36.99%), Postives = 87/146 (59.59%), Query Frame = 3 Query: 444 HHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAGMRLELIEVPAVLEPDDKALDLAADMTTTGLNHVAFDVGPAIEAEGLDGLKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKD 881
HH +++T++I RA+ FY LG RF AG ++EG G R+EL++VP EP A D AD TG H++FD+ E+ L +L++L RQ D G S+ +++ P +Q+IG D++++AF+ D DG+ LE + + +
Sbjct: 2 HHASIKTADIHRAIAFYEQLGFVMQTRFTAGITLACWMEGLGGRIELMQVP---EPRPTA-DAFADEHYTGYYHLSFDLSEQAES-----LPAWLADL-RQRVDQSGGSLSVLLEPQQQQIGDDVYEVAFLADTDGLPLEFIRRME 137
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: A0A6I5RIC9_9CYAN (VOC family protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A6I5RIC9_9CYAN) HSP 1 Score: 92.0 bits (227), Expect = 4.720e-19 Identity = 53/149 (35.57%), Postives = 86/149 (57.72%), Query Frame = 3 Query: 444 HHCALRTSNIVRAMKFYSLLGMNEAARFRAGNARCAFLEGAGMRLELIEVPAVLEPDDKALDLAADMTTTGLNHVAFDVGPAIEAEGLDGLKGFLSELNRQSEDAFG-----MSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHK 875
HH ++RT++I RA+ FY LLG + RF G+ ++EG G R+EL++VP +P A D AD TG H++FD+ IE L G+L L + DA + +++++ P +Q IG ++++AF+ DADG+ LE + +
Sbjct: 2 HHASIRTADIFRAIAFYELLGFSVCERFTTGSTLACWMEGLGGRIELLQVP---QPRPAA-DAFADEHYTGYYHLSFDLSQVIE-----NLPGWLQALQAKFTDASTENPSVLPLKVLLEPQQQMIGDRVYEVAFIADADGLPLEFLRQ 141
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Match: A0A7S0F5M1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F5M1_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 9.030e-19 Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 3 Query: 564 AGMRLELIEVPAVLEPDD-KALDLAADMTTTGLNHVAFDVGPAIEAEG-LDGLKGFLSELNRQSEDAFGMSVRLVVSPYEQRIGQDIFDLAFVMDADGVLLELVHKKDTLDIDMPQAW 911
A RLELIEVP L PD+ +A++L G NH A DV +I + L L+ +++ +NR+S + FG ++R+ + P +Q IG +F+LAF+ DADG L+EL++K+ L+ + W
Sbjct: 4 AACRLELIEVPPFLLPDNARAVNLMQRQELLGQNHFAMDVTQSIAQDASLSNLQDYIASINRKSIETFGKALRIALQPQQQMIGNGVFELAFLFDADGSLIELLNKQSELEQTIASGW 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.895.1 >prot_Ecto-sp6_S_contig103.895.1 ID=prot_Ecto-sp6_S_contig103.895.1|Name=mRNA_Ecto-sp6_S_contig103.895.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=289bp MATPARLLSAFSLCLAVCGKPVAAFLPGSCRVSGEVLTSGNSNCRVCTRRback to top mRNA from alignment at Ecto-sp6_S_contig103:171469..175883- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.895.1 ID=mRNA_Ecto-sp6_S_contig103.895.1|Name=mRNA_Ecto-sp6_S_contig103.895.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4415bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:171469..175883- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:171469..175883- >mRNA_Ecto-sp6_S_contig103.895.1 ID=mRNA_Ecto-sp6_S_contig103.895.1|Name=mRNA_Ecto-sp6_S_contig103.895.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:171469..175883- (Ectocarpus species6 EcLAC_371)back to top |