mRNA_Ecto-sp6_S_contig103.886.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.886.1
Unique NamemRNA_Ecto-sp6_S_contig103.886.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig103.886.1 vs. uniprot
Match: R1CIT9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CIT9_EMIHU)

HSP 1 Score: 87.0 bits (214), Expect = 3.060e-20
Identity = 46/93 (49.46%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:    1 PKDHTVVCTKSGTCVIGRYKPFGGKTAHERLATAGNIKSPAIGASIKPGGKVALKSESVNREKHGKCDMAGTRLGEATRRRIEAGKVMSTKDY 279
            PK  TVVC     CVIG YKP    TAHERLA A  +  P +  SIKP G+VAL+SES+NR     CD AGT+LG+    ++  G V   K+Y
Sbjct:    3 PKSGTVVCDGE-KCVIGNYKPTKDGTAHERLAKAAGMDKPKVAGSIKPDGRVALRSESINRTNGLGCDAAGTKLGQWAEMKMALGDVEGVKEY 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1CIT9_EMIHU3.060e-2049.46Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:92670..93331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348740.022797-CDS-Ecto-sp6_S_contig103:92669..927841682348740.022797-CDS-Ecto-sp6_S_contig103:92669..92784Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 92670..92784 -
1682348740.0325904-CDS-Ecto-sp6_S_contig103:93149..933311682348740.0325904-CDS-Ecto-sp6_S_contig103:93149..93331Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 93150..93331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.886.1prot_Ecto-sp6_S_contig103.886.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 92670..93331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.886.1

>prot_Ecto-sp6_S_contig103.886.1 ID=prot_Ecto-sp6_S_contig103.886.1|Name=mRNA_Ecto-sp6_S_contig103.886.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=99bp
PKDHTVVCTKSGTCVIGRYKPFGGKTAHERLATAGNIKSPAIGASIKPGG
KVALKSESVNREKHGKCDMAGTRLGEATRRRIEAGKVMSTKDYTTRHKQ
back to top

mRNA from alignment at Ecto-sp6_S_contig103:92670..93331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.886.1 ID=mRNA_Ecto-sp6_S_contig103.886.1|Name=mRNA_Ecto-sp6_S_contig103.886.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=662bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:92670..93331- (Ectocarpus species6 EcLAC_371)
CCCAAAGACCATACCGTGGTCTGTACTAAATCCGGCACCTGTGTGATAGG
CCGGTACAAGCCCTTCGGCGGGAAAACGGCGCATGAGCGCCTGGCGACCG
CGGGGAACATCAAAAGCCCCGCTATCGGGGCGTCGATCAAGCCAGGCGGC
AAAGTGGCCTTGAAGTCCGAGTCTGTCAACAGGTGAGCTCAAAATTCCAT
AGGCGTTGAGATTTTGGCTGCCTTTAACAACTCGGCTAGTCTTTAACAGC
TACTTCGTAGGTGAAGACACGCCACGAAATTCGCAATGAAAGTCCGTTGT
TGTTGTAAGCGCCTGTGGCCAATTACAAGCCGAATATTCCGAGGGGCGGT
TCAGACCGATCGGAGTAATGTACGGTAGCAAGCGACAACCAGTCAATGCC
ATTGCGTGAAGACAATTAACGCGACTTCTTCTTGTAACTGGAAACGCCTT
CGTGAGGATACTATTAAACAGGTCCACACCCAGTCCCCGACTAGACTACT
GCAGGCTGCTGAAAACTGCCATTTTGTGATGATCAACGCCAAGTCAGGGA
GAAGCACGGCAAGTGTGACATGGCCGGCACGAGACTTGGGGAGGCGACCA
GGCGCCGTATCGAGGCCGGCAAAGTCATGAGCACCAAGGACTACACCACT
CGCCATAAACAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:92670..93331-

>mRNA_Ecto-sp6_S_contig103.886.1 ID=mRNA_Ecto-sp6_S_contig103.886.1|Name=mRNA_Ecto-sp6_S_contig103.886.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:92670..93331- (Ectocarpus species6 EcLAC_371)
CCCAAAGACCATACCGTGGTCTGTACTAAATCCGGCACCTGTGTGATAGG
CCGGTACAAGCCCTTCGGCGGGAAAACGGCGCATGAGCGCCTGGCGACCG
CGGGGAACATCAAAAGCCCCGCTATCGGGGCGTCGATCAAGCCAGGCGGC
AAAGTGGCCTTGAAGTCCGAGTCTGTCAACAGGGAGAAGCACGGCAAGTG
TGACATGGCCGGCACGAGACTTGGGGAGGCGACCAGGCGCCGTATCGAGG
CCGGCAAAGTCATGAGCACCAAGGACTACACCACTCGCCATAAACAG
back to top