mRNA_Ecto-sp6_S_contig103.884.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.884.1
Unique NamemRNA_Ecto-sp6_S_contig103.884.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.884.1 vs. uniprot
Match: D7FXV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.120e-16
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:   55 ETETFTPAPVAIISPRETISPLTASPFPSPSFTESTPPFTLSPLP 189
            ETETFTPAP+AIISPRET+SPLT +PFPSPSFTESTPPFTLSPLP
Sbjct:  296 ETETFTPAPIAIISPRETVSPLTTNPFPSPSFTESTPPFTLSPLP 340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXV8_ECTSI4.120e-1691.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:81177..81366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.9951587-CDS-Ecto-sp6_S_contig103:81176..813651682348739.9951587-CDS-Ecto-sp6_S_contig103:81176..81365Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 81177..81365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.884.1prot_Ecto-sp6_S_contig103.884.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 81177..81365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.884.1

>prot_Ecto-sp6_S_contig103.884.1 ID=prot_Ecto-sp6_S_contig103.884.1|Name=mRNA_Ecto-sp6_S_contig103.884.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=63bp
SGSRAVTVTPAPTVFSTAETETFTPAPVAIISPRETISPLTASPFPSPSF
TESTPPFTLSPLP
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mRNA from alignment at Ecto-sp6_S_contig103:81177..81366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.884.1 ID=mRNA_Ecto-sp6_S_contig103.884.1|Name=mRNA_Ecto-sp6_S_contig103.884.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=190bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:81177..81366+ (Ectocarpus species6 EcLAC_371)
TCTGGGAGTCGAGCTGTAACGGTTACTCCCGCTCCCACCGTCTTCTCCAC
TGCAGAAACTGAAACCTTCACTCCCGCTCCCGTTGCCATCATCTCCCCTC
GAGAAACTATCTCCCCTCTCACCGCCAGTCCTTTTCCTTCACCTTCCTTC
ACCGAGTCTACTCCCCCTTTCACCCTGTCCCCGCTTCCTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:81177..81366+

>mRNA_Ecto-sp6_S_contig103.884.1 ID=mRNA_Ecto-sp6_S_contig103.884.1|Name=mRNA_Ecto-sp6_S_contig103.884.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:81177..81366+ (Ectocarpus species6 EcLAC_371)
TCTGGGAGTCGAGCTGTAACGGTTACTCCCGCTCCCACCGTCTTCTCCAC
TGCAGAAACTGAAACCTTCACTCCCGCTCCCGTTGCCATCATCTCCCCTC
GAGAAACTATCTCCCCTCTCACCGCCAGTCCTTTTCCTTCACCTTCCTTC
ACCGAGTCTACTCCCCCTTTCACCCTGTCCCCGCTTCCT
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