mRNA_Ecto-sp6_S_contig103.881.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.881.1
Unique NamemRNA_Ecto-sp6_S_contig103.881.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:32403..32846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size445
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.610683-CDS-Ecto-sp6_S_contig103:32402..327471682348739.610683-CDS-Ecto-sp6_S_contig103:32402..32747Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 32403..32747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.6183734-UTR-Ecto-sp6_S_contig103:32747..328461682348739.6183734-UTR-Ecto-sp6_S_contig103:32747..32846Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 32748..32846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.881.1prot_Ecto-sp6_S_contig103.881.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 32403..32747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.881.1

>prot_Ecto-sp6_S_contig103.881.1 ID=prot_Ecto-sp6_S_contig103.881.1|Name=mRNA_Ecto-sp6_S_contig103.881.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp
EYVAWILIGNLRRHCCSNTNSSFADTVCPAKAIAKLEKSSRWRWAPIDGD
GQCCEFIFPRNARKYRIVFGFAVPFASLLQPSTFHCMRTRTTNRERPKDA
PVTILSANVLPISQ*
back to top

mRNA from alignment at Ecto-sp6_S_contig103:32403..32846+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.881.1 ID=mRNA_Ecto-sp6_S_contig103.881.1|Name=mRNA_Ecto-sp6_S_contig103.881.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=444bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:32403..32846+ (Ectocarpus species6 EcLAC_371)
GAATACGTGGCATGGATATTGATTGGTAACCTTCGTAGACactGCTGTTC
TAATACGAACAGTTCCTTTGCCGATACTGTGTGTCCTGCGAAAGCAATCG
CGAAACTTGAGAAATCCAGTCGATGGAGATGGGCACCAATCGATGGAGAC
GGGCAATGTTGCGAATTCATTTTCCCAAGAAATGCGCGCAAGTACCGCAT
TGTCTTTGGTTTCGCCGTTCCATTTGCTTCTCTCCTACAGCCAAGTACTT
TCCATTGCATGAGGACTCGTACAACCAACAGAGAGAGACCAAAGGATGCT
CCAGTGACGATTCTTTCCGCGAACGTGCTACCTATCTCTCAGTGATACAT
TTGCTCGTTCTTCGATGTTACTCTTCCTCTCAGATACTTCGACAATGAGT
GTCGTCGCCGGTGCGGTGGGAGGCGGGCTAGCCGTAGGGGCGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:32403..32846+

>mRNA_Ecto-sp6_S_contig103.881.1 ID=mRNA_Ecto-sp6_S_contig103.881.1|Name=mRNA_Ecto-sp6_S_contig103.881.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:32403..32846+ (Ectocarpus species6 EcLAC_371)
GAATACGTGGCATGGATATTGATTGGTAACCTTCGTAGACactGCTGTTC
TAATACGAACAGTTCCTTTGCCGATACTGTGTGTCCTGCGAAAGCAATCG
CGAAACTTGAGAAATCCAGTCGATGGAGATGGGCACCAATCGATGGAGAC
GGGCAATGTTGCGAATTCATTTTCCCAAGAAATGCGCGCAAGTACCGCAT
TGTCTTTGGTTTCGCCGTTCCATTTGCTTCTCTCCTACAGCCAAGTACTT
TCCATTGCATGAGGACTCGTACAACCAACAGAGAGAGACCAAAGGATGCT
CCAGTGACGATTCTTTCCGCGAACGTGCTACCTATCTCTCAGTGA
back to top