mRNA_Ecto-sp6_S_contig103.880.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.880.1 vs. uniprot
Match: D7FXV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV8_ECTSI) HSP 1 Score: 741 bits (1913), Expect = 4.270e-267 Identity = 420/443 (94.81%), Postives = 421/443 (95.03%), Query Frame = 1 Query: 151 MSSCDDLFYLDIDYSTDRDGCYEVGSTINLENAYFLDGIADEGSALVYASENIVDDNLVWVLGNVNEWYDGDTWDVSWLCRDAALGDASTQHPSEVVQWNCYSSEDSDYTRLDEISITCSCGTTPAPAALSCDDSFSLDVDYSSVRDGCYELNTAWTINGENSYFLNGIEEDVDSSVVYTTDDLVDDHLVWVLGNVNEYEEGNWVISPICRDAALGDPFTQEPWEVARWDCYSSDDDDFTRLDEISITCSCDTTPAPTTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAPIAIISPRETSSPLTANPFPSPSFTESTPPFTLSPLPEGTTTPATVASSGGGDTSTMSVVAGAVGGGLAVGAIAAVVLLFKTGRLKPCGNDNSSGSSPRVGSIPAGAPSATSSAIAGTQLPAAMQYPEALRT 1479
MSSCDDLFYLDIDYSTDRDGCYEVGSTINLENAYFLDGIADEGSALVYASE+IVDDNLVWVLGNVNEWYDGDTWDVSWLCRDAALGDASTQHPSEVVQWNCYSSEDSDYTRLDEISITCSCGTTPAP ALSCDDSFSLDVDYSSVRDGCYELN AWTINGENSYFLNGIEEDVDSSVVYTTDDLVDDHLVWVLGNVNEYEEGNWVISPICRDAALGDPFTQEPWEVARWDCYSSDDDDFTRLDEISITCSCDTTPAPT GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TPAPIAIISPRET SPLT NPFPSPSFTESTPPFTLSPLPEGTTTPATVASSGGGDTSTMSVVAGAVGGGL VGAIAAVVLLFKTGRLKPCGNDNSS SP VGSIPAGAPSATSSAIAGTQLPAAMQYPEALRT
Sbjct: 1 MSSCDDLFYLDIDYSTDRDGCYEVGSTINLENAYFLDGIADEGSALVYASESIVDDNLVWVLGNVNEWYDGDTWDVSWLCRDAALGDASTQHPSEVVQWNCYSSEDSDYTRLDEISITCSCGTTPAPTALSCDDSFSLDVDYSSVRDGCYELNIAWTINGENSYFLNGIEEDVDSSVVYTTDDLVDDHLVWVLGNVNEYEEGNWVISPICRDAALGDPFTQEPWEVARWDCYSSDDDDFTRLDEISITCSCDTTPAPTAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETETF--------TPAPIAIISPRETVSPLTTNPFPSPSFTESTPPFTLSPLPEGTTTPATVASSGGGDTSTMSVVAGAVGGGLVVGAIAAVVLLFKTGRLKPCGNDNSSEPSPGVGSIPAGAPSATSSAIAGTQLPAAMQYPEALRT 435
BLAST of mRNA_Ecto-sp6_S_contig103.880.1 vs. uniprot
Match: A0A6H5JTE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE7_9PHAE) HSP 1 Score: 184 bits (468), Expect = 6.620e-53 Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 1 Query: 379 SWLCRDAALGDASTQHPSEVVQWNCYSSEDSDYTRLDEISITCSCGTTPAPAALSCDDSFSLDVDYSSVRDGCYELNTAWTINGENSYFLNGIEEDVDSSVVYTTDDLVDDH 714
SW CRDAALGD T P EV Q +CY+S+D DYTRLDEISITCSCGTTPAP A SCDDSFSLDVDY S RDGCYELNTAWTING+N+YFLNGIEEDVDSSVVY DD+VDD+
Sbjct: 3 SW-CRDAALGDPFTHDPWEVTQSDCYNSDDGDYTRLDEISITCSCGTTPAPTAPSCDDSFSLDVDYFSGRDGCYELNTAWTINGKNAYFLNGIEEDVDSSVVYAADDMVDDN 113
BLAST of mRNA_Ecto-sp6_S_contig103.880.1 vs. uniprot
Match: D7G7I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I5_ECTSI) HSP 1 Score: 190 bits (483), Expect = 1.360e-52 Identity = 186/341 (54.55%), Postives = 215/341 (63.05%), Query Frame = 1 Query: 541 SCDDSFSLDVDYSSVRDGCYELNTAWTINGENSYFLNGIEEDVDSSVVYTTDDLVDDHLVWVLGNVNEY--EEGNWVISPICRDAALGDPFTQEPWEVARWDCYSSDDDDFTRLDEISITCSCDT--------------TPAPTTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAPIAIISPRETSSPLTANPFPSP------------SFTESTPPFTLSPLPEGTTTPATVASSGGGDTSTMSVVAGAVGGGLAVGAIAAVVLLFKTGRLKPCGNDNSSGSSPRVGSIPAGA-PSATSSAIAGTQLPAAMQYPEALR 1476
SC SF ++VDY+S DGCYE +T ++N + YFL+G+E SS+VY + DDH VWV+ NV + EEG + +S C+DA D T P EV +W+CYS+ D+D+TRLDEI ITCSC T TP PT XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX XXXX + TEST PFT PLP+ TTTPATVASSGGGD STMSVVA AVGGGL VGAIA ++LLFKTGRLK C N +S G+S VG IPA A PSA SA G Q+PAA+QYPEALR
Sbjct: 3 SCYSSFYVEVDYNSAVDGCYE-DTTTSVNDLDGYFLDGVEAG-GSSIVYASSSFRDDHFVWVVANVYDIDVEEGIFDVSITCKDAYEDDATTLHPVEVIQWNCYSTADEDYTRLDEIEITCSCGTVAGYTPSPVYSPIATPEPTXXXXXXXXXXXXXXXXXXXXXXXXXAPITPXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALTESTSPFTPPPLPDITTTPATVASSGGGDPSTMSVVAVAVGGGLVVGAIATLILLFKTGRLKHCRNGSSHGTSRGVGPIPAAAGPSAMESARRGMQIPAAIQYPEALR 341
BLAST of mRNA_Ecto-sp6_S_contig103.880.1 vs. uniprot
Match: A0A6H5K4G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G7_9PHAE) HSP 1 Score: 141 bits (356), Expect = 4.260e-34 Identity = 182/387 (47.03%), Postives = 207/387 (53.49%), Query Frame = 1 Query: 541 SCDDSFSLDVDYSSVRDGCYELNTAWTINGENSYFLNGIEEDVDSSVVYTTDDLVDDHLVWVLGNVNEY--EEGNWVISPICRDAALGDPFTQEPWEVARWDCYSSDDDDFTRLDEISITCSCDT------------------------------------------TPAPTTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAPIAIISPRETSSPLTANPFP------------------------------SPSFTESTPPFTLSPLPEGTTTPATVASSGGGDTSTMSVVAGAVGGGLAVGAIAAVVLLFKTGRLKPCGNDNSSGSSPRVGSIPAGA-PSATSSAIAGTQLPAAMQYPEALR 1476
SC SF L++DY+S DGCYE +T +IN + YFL+G+E S V+ VWV+ NV + EEG + + C+DA D T P EV +W+CYS+ D+D+TRLDEI ITCSC T TPAP T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + + TEST PFT SPLP+ TTTPATVASSGGG GGGL VGAIA ++LLFKTGRLK C N NS G SP VG IPA A PSA SA G QLPAA+QYPEALR
Sbjct: 3 SCYGSFYLNIDYTSEVDGCYE-DTTTSINDLDGYFLDGVE--AGGSSVF----------VWVVANVYDMDVEEGIFDAATTCKDAYEEDATTLHPVEVIQWNCYSTADEDYTRLDEIEITCSCGTVAGLTSSPVYSPIATPEPTPAXXSXXXXXXXXXXXXXXXTPLTPAPITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTALTESTSPFTPSPLPDITTTPATVASSGGG-----------FGGGLVVGAIAILILLFKTGRLKHCRNGNSHGPSPGVGQIPAAAGPSAMESARRGMQLPAAIQYPEALR 365
BLAST of mRNA_Ecto-sp6_S_contig103.880.1 vs. uniprot
Match: D7FYB8_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB8_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 2.220e-18 Identity = 66/115 (57.39%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 1135 PFPSPSFTESTPPFTLSPLPEGTTTPATVASSGGGDT--STMSVVAGAVGGGLAVGAIAAVVLLFKTGRLKPCGNDNSSGSSPRVGSIPAGAPSATSSAIAGTQLPAAMQYPEAL 1473
P PS T T TLSPL +GTT PAT+ASSG GD+ +T+ +VAG +G G AVV+LFKTGRLK C + +G SP +GSIPA APSATSSA+ G QLP A+QYPE L
Sbjct: 159 PPPSAPSTAPTALLTLSPLLDGTTAPATIASSGRGDSDSATVGLVAGVLGVGXXXXXXGAVVVLFKTGRLKSCRHGTPNGPSPGMGSIPAAAPSATSSAMEGIQLPPAIQYPEVL 273
BLAST of mRNA_Ecto-sp6_S_contig103.880.1 vs. uniprot
Match: A0A6H5JVQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ9_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 5.690e-10 Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 Query: 541 SCDDSFSLDVDYSSVRDGCYELNTAWTINGENSYFLNGIEEDVDSSV 681
SCD+ F LDVDY S DGCYE++T TINGE +YFLNGIEE VDS V
Sbjct: 3 SCDNVFHLDVDYYSFYDGCYEVSTTTTINGEYAYFLNGIEE-VDSYV 48 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.880.1 >prot_Ecto-sp6_S_contig103.880.1 ID=prot_Ecto-sp6_S_contig103.880.1|Name=mRNA_Ecto-sp6_S_contig103.880.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=494bp LTEHSWKRARVRAQAHAVWKAHWRGSLHHEGRSPSTGSLFTSEALPLAFGback to top mRNA from alignment at Ecto-sp6_S_contig103:25676..33027+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.880.1 ID=mRNA_Ecto-sp6_S_contig103.880.1|Name=mRNA_Ecto-sp6_S_contig103.880.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7352bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:25676..33027+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:25676..33027+ >mRNA_Ecto-sp6_S_contig103.880.1 ID=mRNA_Ecto-sp6_S_contig103.880.1|Name=mRNA_Ecto-sp6_S_contig103.880.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1482bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:25676..33027+ (Ectocarpus species6 EcLAC_371)back to top |