mRNA_Ecto-sp6_S_contig102.876.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: D7G951_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G951_ECTSI) HSP 1 Score: 573 bits (1477), Expect = 2.050e-203 Identity = 276/288 (95.83%), Postives = 282/288 (97.92%), Query Frame = 1 Query: 562 MVAGARNADAIEFPLYKDQAPQPVSSMPWLKQHMLDGPLRGFLQQYYSHDDEEEGREGTSAKILSDRHMHRGKTALFLFLMYHTNEQIQGEVFYMDEDMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKKHLPKLRRLHAMGTAMAKALSLQAEVRELSHPSANVIRCGYHVMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRTFRELEHVKLRCFRCPGEPEFRDMESLKAHNRACTAPVPAGGRHDPAALDVRRGSST 1425
M AGARNAD IEFPLYKDQAPQPVSSMPWLKQHMLDGPLRGFL+QYY+HDDEEEGRE TSAKILSDRH+HRGKTALFLFLMYHTNEQIQGEVFYMDED+MVTYDGFPKGKFHLLVVPRETFLNVTGPSALRK+HLPKLRRLHAMGTA+AKALSLQAEVRELSHPSANVIRCGYH MPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMR FRELEHVKLRCFRCPGEPEFR MESLKAHNRACTAPVPAGGRHDPAALDVRRGSST
Sbjct: 1 MAAGARNADPIEFPLYKDQAPQPVSSMPWLKQHMLDGPLRGFLEQYYNHDDEEEGREWTSAKILSDRHLHRGKTALFLFLMYHTNEQIQGEVFYMDEDVMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKEHLPKLRRLHAMGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRACTAPVPAGGRHDPAALDVRRGSST 288
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: A0A6H5KT50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT50_9PHAE) HSP 1 Score: 563 bits (1450), Expect = 6.470e-197 Identity = 281/336 (83.63%), Postives = 298/336 (88.69%), Query Frame = 1 Query: 64 FCTGPDRADRPRWAGLGGCSSTRNPGERDWGNVRRRTHQEPADERRGSAEGEARKLGPWRDKRGQRCQWRQEANEPSGGARGGGGDRAETRRCTPTWGTAGGETRDRGRGGAARKAEGLGKLGVRPAQDPRRIPLTSRGLQHPRSPPSASLDKTGATCHSHDVPVGMVAGARNADAIEFPLYKDQAPQPVSSMPWLKQHMLDGPLRGFLQQYYSHDDEEEGREGTSAKILSDRHMHRGKTALFLFLMYHTNEQIQGEVFYMDEDMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKKHLPKLRRLHAMGTAMAKALSLQAEVRELSHPSANVIR 1071
F GP RA+RPRWAG GGCSSTRN GERDWGN RRR HQ+P ERRG EGEAR++G WRDKRGQ CQWRQE NEPSGGARGG G+RAETRR TPTWGTAG TR+ G GGA RKAEGLGK GVRP QDPRRIPLT RGL+HPRSPPS +LDKTG TCHSH VP GM AGARNADAIEFPLYKDQAPQPVS MPWLKQHMLDGPLRGFL+QYY++DD+EEG E T AKILS+RH+H K ALFLFLMYHTNEQIQGEVFYMDE+MMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRK+HLPKLRRLHAMG A+AKALSLQ EVRELSHPSANVIR
Sbjct: 105 FPQGPGRANRPRWAGQGGCSSTRNRGERDWGNARRRVHQDPTGERRGPGEGEAREIGSWRDKRGQGCQWRQEGNEPSGGARGG-GERAETRRYTPTWGTAGDGTREGGGGGATRKAEGLGKFGVRPVQDPRRIPLTHRGLRHPRSPPSTNLDKTGTTCHSHGVPAGMAAGARNADAIEFPLYKDQAPQPVSRMPWLKQHMLDGPLRGFLEQYYNNDDDEEGHEWTGAKILSNRHLHSWKAALFLFLMYHTNEQIQGEVFYMDENMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKEHLPKLRRLHAMGAALAKALSLQVEVRELSHPSANVIR 439
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: A0A6H5K130_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K130_9PHAE) HSP 1 Score: 220 bits (561), Expect = 1.820e-67 Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 1 Query: 1087 MPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRTFRELEHVKLRCFRCPGEPEFRDMESLKAHNRACTAPVPAGGRHDPAALDVRRGSST 1425
MPSQEPLHLHV+SMDLDGTGLKRKTHWNSFTTDLFLE SWVERRLEERGS+GLDM ELEHVKLRCFRCPGEPEFRD+ESLKAHNRACTAPVPA GRHDPAALDVRRGSST
Sbjct: 1 MPSQEPLHLHVISMDLDGTGLKRKTHWNSFTTDLFLETSWVERRLEERGSIGLDM----ELEHVKLRCFRCPGEPEFRDLESLKAHNRACTAPVPAAGRHDPAALDVRRGSST 109
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: D7G952_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G952_ECTSI) HSP 1 Score: 197 bits (501), Expect = 1.570e-57 Identity = 107/131 (81.68%), Postives = 110/131 (83.97%), Query Frame = 2 Query: 38 SFHVFTGRVSVQDRIGPTDQGGPGWAGAARRETQERGIGGTYGGERTRSQRTSGEDLQKERRESLGPGGTSEAKDASGGRKQTSHPEEHEEEEETEQKHGDAXXXXXXXXAKRGTAAEAGPLERPKAWENL 430
S ++DR+GPTDQGGPGWAGAARRETQERGIGGTYGGERTRSQRTSGEDLQKERRESLGPGGTSEA DASG RKQTSHPEEHEEEEETEQKHGDA AK GTAAEAGPLE PKAWENL
Sbjct: 48 SIRAHAAMSFLKDRVGPTDQGGPGWAGAARRETQERGIGGTYGGERTRSQRTSGEDLQKERRESLGPGGTSEANDASGDRKQTSHPEEHEEEEETEQKHGDAHQPGERPEAKLGTAAEAGPLEGPKAWENL 178
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: D8LEA7_ECTSI (FHA-HIT protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA7_ECTSI) HSP 1 Score: 185 bits (470), Expect = 1.980e-49 Identity = 95/185 (51.35%), Postives = 120/185 (64.86%), Query Frame = 1 Query: 820 QIQGEVFYMDEDMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRK-KHLPKLRRLHAMGTAMAKALSLQAEVRELSHPSANVIRCGYHVMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRTFRELEHVKLRCFRCPGEPEFRDMESLKAHNRACTAPVP 1371
++Q EV++ D +V YDG+PK ++HLL++P+ FL+V S LR+ +HL LR+LHA TA+A+ALS Q A VIRCGYH +PS EPLHLH++S D D L ++ HWNSFTTD FL+ASWVE RL ERGSLGLD + LE LRCFRC +M LK H C PVP
Sbjct: 298 ELQREVYFSDNQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQG---------AGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTDFFLDASWVEARLLERGSLGLDKERLKALEATPLRCFRCHSP--MTNMTKLKEHLLGCNLPVP 471
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: A0A6H5KUS4_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS4_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.800e-38 Identity = 70/158 (44.30%), Postives = 98/158 (62.03%), Query Frame = 1 Query: 778 KTALFLFLMYHTNEQIQGEVFYMDEDMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKKHLPKLRRLHAMGTAMAKALSLQAEVRELSHPSANVIRCGYHVMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDM 1251
K LF + +Q ++++ DE MV YDG+PK + HLL++PR +FL+V PS LR++HL LR++HA+G A+A+ LS Q IR G H +PS EPLH+H++S D D ++ HWN FTTD+FLE +W+E LE G L LDM
Sbjct: 41 KEVFHLFFKNCDHPALQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVIRPSDLRREHLSALRQMHALGRAVAEGLSQQG---------IGEIRIGVHAVPSMEPLHMHIISQDFDSERMRMPRHWNIFTTDIFLEPAWIEEMLERHGCLQLDM 189
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: A0A6H5K612_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K612_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.610e-27 Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 1 Query: 778 KTALFLFLMYHTN-EQIQGEVFYMDEDMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRK-KHLPKLRRLHAMGTAMAKALSLQAEVRELSHPSANVIRCGYHVMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWV 1209
K LF +L +++Q EVF+ ++ +V YDG+PK ++HLL++P+ FL+V S LR+ +HL LR+LHA A+A+ALS Q A VIRCGYH +PS EPLHLH++S D D L ++ HWNSFTT F ++
Sbjct: 272 KAVLFQYLKDRPMPDELQREVFFSNDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATAAAVAEALSQQG---------AGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTGTFFPGCFL 408
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: D7G953_ECTSI (Aprataxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G953_ECTSI) HSP 1 Score: 117 bits (292), Expect = 3.720e-27 Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 1 Query: 778 KTALFLFLMYHTNEQIQGEVFYMDEDMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKKHLPKLRRLHAMGTAMAKALSLQAEVRELSHPSANVIRCGYHVMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTT 1182
K LF + +Q ++++ DE MV YDG+PK + HLL++PR +FL+V PS LR++HL L ++HA+G A+A+ LS Q IR G H +PS EPLH+H++S D D L+ HWN FTT
Sbjct: 40 KEVFHLFFKNCDHPALQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALHQMHALGRAVAEDLSQQG---------IGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTT 165
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: A0A7S2SCH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH0_9STRA) HSP 1 Score: 123 bits (309), Expect = 4.440e-27 Identity = 72/177 (40.68%), Postives = 97/177 (54.80%), Query Frame = 1 Query: 832 EVFYMDEDMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKKHLPKLRRLHAMGTAMAKALSLQAEVRELSHPSANVIRCGYHVMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLE----ASWVERRLEERGSLGLDMRT-FRELEHVKLRCFRCPGEP-EFRDMESLKAH 1344
+VFY DE +V YD +PK + HLLV+P+ +FL++ P HLP+LR LH ++AK L + S + +RCGYH +PS EPLH+HV+S D D LK K HWNSFTTD F+ A WVE LG T ++E+ L G F++M +LK H
Sbjct: 273 QVFYEDECCLVVYDAYPKARTHLLVLPKASFLSLRRPQFASAGHLPRLRHLHDRAASVAKWL-------QSSGAAVAPVRCGYHAIPSLEPLHIHVISQDFDSPCLKTKKHWNSFTTDYFVPCEVFARWVEGDKSADPWLGESTATKWKEMLAKPLEIISSSGASLTFKNMPALKEH 442
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Match: C1FFK5_MICCC (zf-C2HE domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FFK5_MICCC) HSP 1 Score: 114 bits (284), Expect = 1.530e-25 Identity = 68/173 (39.31%), Postives = 93/173 (53.76%), Query Frame = 1 Query: 841 YMDEDMMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKKHLPKLRRLHAMGTAMAKALSLQAEVRELSHPSANVIRCGYHVMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRTFRE-LEHVKLRCFRCPGEPEFRDMESLKAHNRAC 1356
+ D D++V D +PK + H LV+ R+T L GPSALR H + R+ +G A+A + A+V A ++R G+H PS LH+H+VS DL G+G+K + HWN+F TD F EA V L RG + D + KLRC RC G+ F M L AH C
Sbjct: 47 WFDSDLVVLTDKYPKARTHYLVLARDTSL-AAGPSALRASHAELVERMATVGRAIAAENA--AKVNGGEETIAPLLRAGFHAKPSMPTLHMHLVSSDLRGSGMKTRRHWNTFATDFFKEADDVVAALRARGRVDWDEEEEEAGVAMAKLRCHRC-GDGPFAQMPKLFAHLDEC 215 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.876.1 >prot_Ecto-sp6_S_contig102.876.1 ID=prot_Ecto-sp6_S_contig102.876.1|Name=mRNA_Ecto-sp6_S_contig102.876.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=476bp MMHTTVGGKCRALVPRFYRPRFCTGPDRADRPRWAGLGGCSSTRNPGERDback to top mRNA from alignment at Ecto-sp6_S_contig102:629355..632582- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.876.1 ID=mRNA_Ecto-sp6_S_contig102.876.1|Name=mRNA_Ecto-sp6_S_contig102.876.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3228bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:629355..632582- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:629355..632582- >mRNA_Ecto-sp6_S_contig102.876.1 ID=mRNA_Ecto-sp6_S_contig102.876.1|Name=mRNA_Ecto-sp6_S_contig102.876.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1428bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:629355..632582- (Ectocarpus species6 EcLAC_371)back to top |