mRNA_Ecto-sp6_S_contig102.870.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.870.1
Unique NamemRNA_Ecto-sp6_S_contig102.870.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 5.920e-37
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    7 VLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
            V+GNMQEEI KA LPIIHYGLDLWTCKVS RKYL VHV YVDSNF+LRHAL++VKHY+PS  IQGTE A+E LF IFRATLAE
Sbjct:  205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAE 287
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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.480e-26
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
            +AV+GNM  EI++A LPI+HYG+DLW CK++  KY+ VHV YV+SN  L+H LLAVKHY+PSAA+Q T  A+E LF +F + L E
Sbjct:  222 KAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAPSAAVQATGKASEILFNVFNSVLRE 306
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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.530e-24
Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   19 MQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
            M  EI++A LPI+HYG+DLW CK++  KY+  HV YV+SNF L++ALL+VKHY+PSAA+Q T+ A+E LF +F++ L E
Sbjct:    1 MLTEIERAPLPIVHYGIDLWQCKITGLKYIDGHVCYVNSNFELQYALLSVKHYAPSAAVQVTDKASEILFIVFKSVLRE 79
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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.670e-18
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
            + V+GNM +E+++A LPI+H+ +D+WT K S RK+L +HV YVD+NF L+ ALL++K Y+P     G + A++ LF I ++ L E
Sbjct:  239 KVVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQGSLGDQRASDVLFQIMKSVLEE 323
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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JXM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.590e-12
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 AVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVH 117
            AV+GNM EEIKKA LPI+HYG+DLWTCK S  K++ VH
Sbjct:   33 AVMGNMSEEIKKAPLPIVHYGVDLWTCKTSGMKFIDVH 70
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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.120e-9
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYL 108
            +AV+GNM EEIKKA LPI+HYG+DLWTCK S  K++
Sbjct:   52 KAVMGNMLEEIKKAPLPIVHYGVDLWTCKTSGMKFI 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JYQ2_9PHAE5.920e-3780.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE4.480e-2658.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN28_9PHAE2.530e-2456.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE1.670e-1845.88Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXM2_9PHAE1.590e-1271.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT2_9PHAE2.120e-969.44Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:502264..502952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.9686337-UTR-Ecto-sp6_S_contig102:502263..5022811682348738.9686337-UTR-Ecto-sp6_S_contig102:502263..502281Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 502264..502281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.9760833-CDS-Ecto-sp6_S_contig102:502281..5024281682348738.9760833-CDS-Ecto-sp6_S_contig102:502281..502428Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 502282..502428 +
1682348738.9835553-CDS-Ecto-sp6_S_contig102:502862..5029521682348738.9835553-CDS-Ecto-sp6_S_contig102:502862..502952Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 502863..502952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.870.1prot_Ecto-sp6_S_contig102.870.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 502282..502952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.870.1

>prot_Ecto-sp6_S_contig102.870.1 ID=prot_Ecto-sp6_S_contig102.870.1|Name=mRNA_Ecto-sp6_S_contig102.870.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=79bp
MQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAV
KHYSPSAAIQGTETATEALFAIFRATLAE
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mRNA from alignment at Ecto-sp6_S_contig102:502264..502952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.870.1 ID=mRNA_Ecto-sp6_S_contig102.870.1|Name=mRNA_Ecto-sp6_S_contig102.870.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:502264..502952+ (Ectocarpus species6 EcLAC_371)
CAGGCAGTGCTCGGGAACATGCAGGAAGAGATCAAGAAGGCAACTCTACC
CATCATCCACTATGGGCTTGACCTGTGGACATGCAAGGTCTCTTGGCGTA
AATACCTCAGTGTCCATGTCTCCTATGTGGACAGCAACTTCACCCTGCGA
CACGCTCTTCTTGCTGTAAGTACATTTCCCCGGTCCCCTCCTCGGTTGCC
CACGTAGAGCGTGGGCACGCATTGTTTGTAGTATTGCTGCTAGCAGTGTT
CTTCGGCGATCAATGCCTGCCAGTTTCTCATGCGGTTCTGTCTCTATCAC
CTTGTTCCCCTTTTCAGACAACACATCTTCAAAATGGTAGATACATTCCG
GCAAAAAAATGTTGAAAATCGCTGTATACCTCCCTCTGTCGTTGCTTGCC
GTAGTTGATGTCGTGATCAACAGTTTGGCGGGGCGGGAGATGTGGAAACG
CACCGCATCGAGAAACGTGCGCAGGTTTCTGCAGATTACTTTCTGCGTGA
CTACAGCATGCCAAGTGTCGCTGCTCGTCAATGTGTAGGCCGTTGATTTG
CAAACCTGCTCCTGTTCCTCCTCCCCCATTTATTCTTTTCGCTTGCCAGG
TAAAGCACTACTCCCCTTCCGCGGCGATTCAGGGGACAGAGACGGCAACC
GAAGCCCTTTTCGCAATCTTCAGGGCGACGCTGGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:502264..502952+

>mRNA_Ecto-sp6_S_contig102.870.1 ID=mRNA_Ecto-sp6_S_contig102.870.1|Name=mRNA_Ecto-sp6_S_contig102.870.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:502264..502952+ (Ectocarpus species6 EcLAC_371)
ATGCAGGAAGAGATCAAGAAGGCAACTCTACCCATCATCCACTATGGGCT
TGACCTGTGGACATGCAAGGTCTCTTGGCGTAAATACCTCAGTGTCCATG
TCTCCTATGTGGACAGCAACTTCACCCTGCGACACGCTCTTCTTGCTGTA
AAGCACTACTCCCCTTCCGCGGCGATTCAGGGGACAGAGACGGCAACCGA
AGCCCTTTTCGCAATCTTCAGGGCGACGCTGGCGGAG
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