mRNA_Ecto-sp6_S_contig102.868.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.868.1
Unique NamemRNA_Ecto-sp6_S_contig102.868.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 8.710e-102
Identity = 273/303 (90.10%), Postives = 274/303 (90.43%), Query Frame = 2 
Query:   44 EIDAAGPKGTTPLHCSIERGHIAVVKLLLASGADVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIQATRINGETPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 952
            EIDAAGPKGT                       DVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ANIQATRINGETPLH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYG TPGNIVG M PETDS+FVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQES VLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL
Sbjct:   97 EIDAAGPKGTXXXXXXXXXXXXXXXXXXXXXXXDVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGANIQATRINGETPLHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 399
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 5.980e-69
Identity = 187/246 (76.02%), Postives = 193/246 (78.46%), Query Frame = 2 
Query:    5 RTEMARWLLLEGAEIDAAGPKGTTPLHCSIERGHIAVVKLLLASGADVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIQATRINGETPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERL 742
            +TEMARWLLL+GA+IDAAGPK TTPLHCSIERGHIAVV+LLLAS ADV VRQG H  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ANIQATRINGETP H                                    HSAGDEGAVEVVDLLLRWNADE DDD YGRTP N+V RMAPETD +FVNVQRVWK LQYAPQDRAWR RGMLVLCR HPERL
Sbjct:  296 KTEMARWLLLKGAKIDAAGPKWTTPLHCSIERGHIAVVELLLASAADVTVRQGGHGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGANIQATRINGETPRHAAAGKLNFEATLALLKHGADMNALGQTRWTPLHSAVHSAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLVVRMAPETDRMFVNVQRVWKPLQYAPQDRAWRHRGMLVLCRVHPERL 541
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.260e-22
Identity = 67/151 (44.37%), Postives = 90/151 (59.60%), Query Frame = 2 
Query:  503 AGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGL-DEGIFRTIVGYL 952
            AG +GA EVV+ LLR  ADET  +  G    +++G    E D +  +V+RV +LL  AP DRAWRRRG L++CRA P+R+  R+  S    + V R TRSR K+     +AG S      D  T   W+ +V +V+ L +EGIFRTIV YL
Sbjct:  254 AGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIAGES----TVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.580e-20
Identity = 69/152 (45.39%), Postives = 87/152 (57.24%), Query Frame = 2 
Query:  503 AGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVN-VQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDE-GIFRTIVGYL 952
            AG +G+ E+VDLLLR  ADET  D  G+ P + VG      D +  + V  V +LL  AP DRAWRRRG+LVLCRA   R  LRQ         + R TRSR KL   + V  G   G   +G T  EW +   RV+ L+E GIFR++VG+L
Sbjct:  272 AGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTP-EGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: A0A6H5KNN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.810e-14
Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = 2 
Query:  653 VWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 952
            V +LL  AP DRAWRRRG+LVLCRA   R  LRQ         + R TRSR KL   + V  G   G   +G T  EW +   RV+ L+EGIFR++VG+L
Sbjct:   54 VHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRSGTP-EGGTGDEWRSASRRVVELEEGIFRSVVGFL 152
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.160e-14
Identity = 59/151 (39.07%), Postives = 72/151 (47.68%), Query Frame = 2 
Query:  503 AGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGL-DEGIFRTIVGYL 952
            AG +G VEVVDLLLRW ADET     G    + +G   PE D +    + V KLL  AP DRAWRRR  LVLCRA P+++ L  +                                     R AR    +  RVLGL +EGIFRTIV ++
Sbjct:  273 AGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSD-------------------------------------RIAR----LEARVLGLVEEGIFRTIVRFI 382
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.340e-13
Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = 2 
Query:  500 SAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESA--VLRVTR------SRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDE-GIFRTIVGYL 952
            ++GD      +DLLLRW ADE   D+ GRTP  +           + N Q V K+ Q AP+D+AWRRRG LVLCRA P R+ L+++ +     A   LR  R      S +  V     AGG   G     + A   S +V +V+GL E G+F TI+ ++
Sbjct:  744 TSGDSAMATTMDLLLRWGADENAVDSAGRTPVTVWRENESMYTLSWANKQSVKKMFQRAPRDKAWRRRGWLVLCRAFPNRVRLKEDNAGTCPRAGRSLRARRVGAGSGSGSSSVPPVGEAGGVPVGTLPPEKMAGGLSALVAKVVGLHEDGVFMTIMEFV 903
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.240e-12
Identity = 104/306 (33.99%), Postives = 124/306 (40.52%), Query Frame = 2 
Query:   68 GTTPLHCSIERGHIAVVKLLLASGADVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIQATRINGETPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLG--------LDEG---IFRTIVGYL 952
            G TPLH     G  A  + LL +GADVA+RQ        XXXXXXXXXXXXXXXXXX                                   ANI+A + NG TPLH                                      AG  G  E+VDLLLR  ADET     G T  ++V     E+DS+  +V RV KLL  AP DRAWRRRG L+L RAH    G R    H    A       RT+  E                R   +W+ +V  ++G        + +G   IF  IVGYL
Sbjct:  490 GCTPLHLVAMAGRAAAAQALLDAGADVALRQNG-VGLSSXXXXXXXXXXXXXXXXXXHGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIEA-QANGSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYP--GGRVQFGHRTSQAPAAGVAKRTRSSEEPS-------------RAEIDWAGVVSMLMGDGVDPISLMGDGANLIFEKIVGYL 778
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 5.300e-12
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 2 
Query:  515 GAVEVVDLLLRWNADETDDDAYGRTPGNIVG-----RMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGL 748
            G+ +VVDLLLRW ADET     G T  + +G     R  PE D      +R   LL  AP DRAWRRRG+LVLCRAHP+RL L
Sbjct:  288 GSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDD------ERARSLLARAPADRAWRRRGLLVLCRAHPDRLQL 364
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BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.570e-12
Identity = 54/151 (35.76%), Postives = 86/151 (56.95%), Query Frame = 2 
Query:  527 VVDLLLRWNADETDDDAYGRTPGNIVGRMAP---ETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWS-----NMVYRVLGLD-EGIFRTIVGYL 952
            VV+LLLRW ADE   +  G TP ++VG +     + +    + QR+ ++L  AP DR+WRRRG LVL R+ P R+ +   +S    S++ R+  +  K      VA  SG+G++ D     +       ++V R++GL+ EG+FR +VG+L
Sbjct:  369 VVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSS--SSSISRINGNSAK------VARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G981_ECTSI8.710e-10290.10Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JBC2_9PHAE5.980e-6976.02Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KXK5_9PHAE1.260e-2244.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI1.580e-2045.39Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5KNN1_9PHAE1.810e-1448.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL4_ECTSI6.160e-1439.07Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D7G751_ECTSI3.340e-1337.50Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5JHY9_9PHAE2.240e-1233.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U1_ECTSI5.300e-1253.01Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LQN0_ECTSI8.570e-1235.76Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:494552..495938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score319.7
Seed ortholog evalue1.5e-84
Seed eggNOG ortholog2880.D7G981
Model size1387
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionsimilar to ankyrin 2,3/unc44
Ec32 orthologEc-13_002950.2
Cds size942
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.7572746-UTR-Ecto-sp6_S_contig102:494551..4945641682348738.7572746-UTR-Ecto-sp6_S_contig102:494551..494564Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 494552..494564 +
1682348738.7820756-UTR-Ecto-sp6_S_contig102:495506..4959381682348738.7820756-UTR-Ecto-sp6_S_contig102:495506..495938Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 495507..495938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.7727795-CDS-Ecto-sp6_S_contig102:494564..4955061682348738.7727795-CDS-Ecto-sp6_S_contig102:494564..495506Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 494565..495506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.868.1prot_Ecto-sp6_S_contig102.868.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 494565..495506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.868.1

>prot_Ecto-sp6_S_contig102.868.1 ID=prot_Ecto-sp6_S_contig102.868.1|Name=mRNA_Ecto-sp6_S_contig102.868.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=314bp
MARWLLLEGAEIDAAGPKGTTPLHCSIERGHIAVVKLLLASGADVAVRQG
DHGVTPMDAAVDGGFIDIMKALIEHGVDVNLACTLHGAPSLDYAAHNNNV
EAIGVLVEAGANIQATRINGETPLHAAAGKLNFEATLALLKHGADVHALG
QTRWTPLHSAAHSAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRM
APETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNAS
HVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLG
LDEGIFRTIVGYL*
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mRNA from alignment at Ecto-sp6_S_contig102:494552..495938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.868.1 ID=mRNA_Ecto-sp6_S_contig102.868.1|Name=mRNA_Ecto-sp6_S_contig102.868.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1387bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:494552..495938+ (Ectocarpus species6 EcLAC_371)
TGGCAGAACGGAGATGGCACGGTGGTTGCTGCTGGAAGGAGCTGAGATAG
ATGCTGCGGGCCCAAAAGGGACGACACCTCTTCATTGCTCGATTGAACGC
GGGCATATCGCCGTAGTGAAACTTCTCCTGGCATCCGGTGCCGACGTTGC
CGTTCGACAGGGTGATCATGGTGTCACGCCCATGGACGCTGCCGTCGACG
GTGGTTTTATCGATATCATGAAAGCTTTGATCGAGCACGGTGTTGATGTC
AACTTGGCCTGCACCCTACATGGTGCGCCTTCGCTGGACTACGCAGCGCA
CAATAACAACGTTGAGGCGATTGGCGTCCTCGTGGAGGCGGGGGCCAACA
TCCAGGCAACTCGAATCAATGGCGAGACACCTCTTCATGCGGCCGCAGGC
AAGCTCAACTTTGAGGCGACGCTTGCGCTACTGAAGCACGGCGCAGATGT
GCACGCGCTCGGTCAGACCAGGTGGACTCCGTTGCACTCTGCAGCACACT
CGGCTGGTGACGAAGGCGCTGTGGAGGTAGTGGATCTCCTGCTGAGGTGG
AACGCAGACGAAACAGACGATGATGCCTACGGTCGCACACCCGGCAACAT
TGTCGGACGCATGGCTCCAGAGACGGACAGTGTGTTCGTGAACGTCCAAC
GCGTATGGAAGCTGTTGCAATACGCTCCGCAAGACCGAGCATGGCGTCGC
CGAGGTATGCTAGTCCTGTGCCGTGCTCACCCCGAAAGGTTGGGTCTACG
GCAGAACGCCAGCCACGTGCAAGAGAGTGCGGTGCTGCGGGTAACTCGTA
GCCGGACCAAGCTGGTCGAAAGGGAACAAGTAGCCGGCGGCAGCGGGGAA
GGTGCTGCGGCGGATGGCAGAACCGCTCGCGAGTGGTCGAATATGGTGTA
CAGGGTCCTTGGGTTGGACGAAGGCATCTTTCGGACGATTGTAGGGTATT
TGTGATTTCGATGAGATCAGCTGCTTTAGTCTTGTCATGCTGGGGCTGGG
TTTACGCCATGCCGTACAATAGTGCGGACTAGTGGGCATGCCTTTGTTTT
TTTTCGTGTTTTTTCTGTATCGTAACGCACTACAGAGGCACGTTGGTGTG
ATGAGTGTGCCACTAGAAATTCATCAACCTATAGGTGTACCTTGTATCGC
CGTTCTTGATGATGTGATTCCGGACAGAACTCGATCGGCTACCTCCGCTG
GAAGTAGCTGGTCCACGTGATACCCTCGTCGCTGGTTGGAGCTCTCGCGG
TGCTCAACCTCTCTCGACGCGGCAATGTACATAGACTAGAGTATGTGTTC
GGATCGAATCTCGGCTCAATGGATGGTAACGTGACATATGAATTGGCCTC
ACCTCGTACTTCTAATCGATAGTACCTGTCTTTTTCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:494552..495938+

>mRNA_Ecto-sp6_S_contig102.868.1 ID=mRNA_Ecto-sp6_S_contig102.868.1|Name=mRNA_Ecto-sp6_S_contig102.868.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:494552..495938+ (Ectocarpus species6 EcLAC_371)
ATGGCACGGTGGTTGCTGCTGGAAGGAGCTGAGATAGATGCTGCGGGCCC
AAAAGGGACGACACCTCTTCATTGCTCGATTGAACGCGGGCATATCGCCG
TAGTGAAACTTCTCCTGGCATCCGGTGCCGACGTTGCCGTTCGACAGGGT
GATCATGGTGTCACGCCCATGGACGCTGCCGTCGACGGTGGTTTTATCGA
TATCATGAAAGCTTTGATCGAGCACGGTGTTGATGTCAACTTGGCCTGCA
CCCTACATGGTGCGCCTTCGCTGGACTACGCAGCGCACAATAACAACGTT
GAGGCGATTGGCGTCCTCGTGGAGGCGGGGGCCAACATCCAGGCAACTCG
AATCAATGGCGAGACACCTCTTCATGCGGCCGCAGGCAAGCTCAACTTTG
AGGCGACGCTTGCGCTACTGAAGCACGGCGCAGATGTGCACGCGCTCGGT
CAGACCAGGTGGACTCCGTTGCACTCTGCAGCACACTCGGCTGGTGACGA
AGGCGCTGTGGAGGTAGTGGATCTCCTGCTGAGGTGGAACGCAGACGAAA
CAGACGATGATGCCTACGGTCGCACACCCGGCAACATTGTCGGACGCATG
GCTCCAGAGACGGACAGTGTGTTCGTGAACGTCCAACGCGTATGGAAGCT
GTTGCAATACGCTCCGCAAGACCGAGCATGGCGTCGCCGAGGTATGCTAG
TCCTGTGCCGTGCTCACCCCGAAAGGTTGGGTCTACGGCAGAACGCCAGC
CACGTGCAAGAGAGTGCGGTGCTGCGGGTAACTCGTAGCCGGACCAAGCT
GGTCGAAAGGGAACAAGTAGCCGGCGGCAGCGGGGAAGGTGCTGCGGCGG
ATGGCAGAACCGCTCGCGAGTGGTCGAATATGGTGTACAGGGTCCTTGGG
TTGGACGAAGGCATCTTTCGGACGATTGTAGGGTATTTGTGA
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