mRNA_Ecto-sp6_S_contig102.868.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI) HSP 1 Score: 318 bits (816), Expect = 8.710e-102 Identity = 273/303 (90.10%), Postives = 274/303 (90.43%), Query Frame = 2 Query: 44 EIDAAGPKGTTPLHCSIERGHIAVVKLLLASGADVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIQATRINGETPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 952 EIDAAGPKGT DVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ANIQATRINGETPLH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYG TPGNIVG M PETDS+FVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQES VLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL Sbjct: 97 EIDAAGPKGTXXXXXXXXXXXXXXXXXXXXXXXDVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGANIQATRINGETPLHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 399
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE) HSP 1 Score: 238 bits (608), Expect = 5.980e-69 Identity = 187/246 (76.02%), Postives = 193/246 (78.46%), Query Frame = 2 Query: 5 RTEMARWLLLEGAEIDAAGPKGTTPLHCSIERGHIAVVKLLLASGADVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIQATRINGETPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERL 742 +TEMARWLLL+GA+IDAAGPK TTPLHCSIERGHIAVV+LLLAS ADV VRQG H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ANIQATRINGETP H HSAGDEGAVEVVDLLLRWNADE DDD YGRTP N+V RMAPETD +FVNVQRVWK LQYAPQDRAWR RGMLVLCR HPERL Sbjct: 296 KTEMARWLLLKGAKIDAAGPKWTTPLHCSIERGHIAVVELLLASAADVTVRQGGHGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGANIQATRINGETPRHAAAGKLNFEATLALLKHGADMNALGQTRWTPLHSAVHSAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLVVRMAPETDRMFVNVQRVWKPLQYAPQDRAWRHRGMLVLCRVHPERL 541
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.260e-22 Identity = 67/151 (44.37%), Postives = 90/151 (59.60%), Query Frame = 2 Query: 503 AGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGL-DEGIFRTIVGYL 952 AG +GA EVV+ LLR ADET + G +++G E D + +V+RV +LL AP DRAWRRRG L++CRA P+R+ R+ S + V R TRSR K+ +AG S D T W+ +V +V+ L +EGIFRTIV YL Sbjct: 254 AGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIAGES----TVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI) HSP 1 Score: 103 bits (258), Expect = 1.580e-20 Identity = 69/152 (45.39%), Postives = 87/152 (57.24%), Query Frame = 2 Query: 503 AGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVN-VQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDE-GIFRTIVGYL 952 AG +G+ E+VDLLLR ADET D G+ P + VG D + + V V +LL AP DRAWRRRG+LVLCRA R LRQ + R TRSR KL + V G G +G T EW + RV+ L+E GIFR++VG+L Sbjct: 272 AGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTP-EGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: A0A6H5KNN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN1_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.810e-14 Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = 2 Query: 653 VWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 952 V +LL AP DRAWRRRG+LVLCRA R LRQ + R TRSR KL + V G G +G T EW + RV+ L+EGIFR++VG+L Sbjct: 54 VHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRSGTP-EGGTGDEWRSASRRVVELEEGIFRSVVGFL 152
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 6.160e-14 Identity = 59/151 (39.07%), Postives = 72/151 (47.68%), Query Frame = 2 Query: 503 AGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGL-DEGIFRTIVGYL 952 AG +G VEVVDLLLRW ADET G + +G PE D + + V KLL AP DRAWRRR LVLCRA P+++ L + R AR + RVLGL +EGIFRTIV ++ Sbjct: 273 AGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSD-------------------------------------RIAR----LEARVLGLVEEGIFRTIVRFI 382
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 3.340e-13 Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = 2 Query: 500 SAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESA--VLRVTR------SRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDE-GIFRTIVGYL 952 ++GD +DLLLRW ADE D+ GRTP + + N Q V K+ Q AP+D+AWRRRG LVLCRA P R+ L+++ + A LR R S + V AGG G + A S +V +V+GL E G+F TI+ ++ Sbjct: 744 TSGDSAMATTMDLLLRWGADENAVDSAGRTPVTVWRENESMYTLSWANKQSVKKMFQRAPRDKAWRRRGWLVLCRAFPNRVRLKEDNAGTCPRAGRSLRARRVGAGSGSGSSSVPPVGEAGGVPVGTLPPEKMAGGLSALVAKVVGLHEDGVFMTIMEFV 903
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.240e-12 Identity = 104/306 (33.99%), Postives = 124/306 (40.52%), Query Frame = 2 Query: 68 GTTPLHCSIERGHIAVVKLLLASGADVAVRQGDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIQATRINGETPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAGDEGAVEVVDLLLRWNADETDDDAYGRTPGNIVGRMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLG--------LDEG---IFRTIVGYL 952 G TPLH G A + LL +GADVA+RQ XXXXXXXXXXXXXXXXXX ANI+A + NG TPLH AG G E+VDLLLR ADET G T ++V E+DS+ +V RV KLL AP DRAWRRRG L+L RAH G R H A RT+ E R +W+ +V ++G + +G IF IVGYL Sbjct: 490 GCTPLHLVAMAGRAAAAQALLDAGADVALRQNG-VGLSSXXXXXXXXXXXXXXXXXXHGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIEA-QANGSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYP--GGRVQFGHRTSQAPAAGVAKRTRSSEEPS-------------RAEIDWAGVVSMLMGDGVDPISLMGDGANLIFEKIVGYL 778
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 5.300e-12 Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 2 Query: 515 GAVEVVDLLLRWNADETDDDAYGRTPGNIVG-----RMAPETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGL 748 G+ +VVDLLLRW ADET G T + +G R PE D +R LL AP DRAWRRRG+LVLCRAHP+RL L Sbjct: 288 GSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDD------ERARSLLARAPADRAWRRRGLLVLCRAHPDRLQL 364
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 8.570e-12 Identity = 54/151 (35.76%), Postives = 86/151 (56.95%), Query Frame = 2 Query: 527 VVDLLLRWNADETDDDAYGRTPGNIVGRMAP---ETDSVFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESAVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWS-----NMVYRVLGLD-EGIFRTIVGYL 952 VV+LLLRW ADE + G TP ++VG + + + + QR+ ++L AP DR+WRRRG LVL R+ P R+ + +S S++ R+ + K VA SG+G++ D + ++V R++GL+ EG+FR +VG+L Sbjct: 369 VVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSS--SSSISRINGNSAK------VARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.868.1 >prot_Ecto-sp6_S_contig102.868.1 ID=prot_Ecto-sp6_S_contig102.868.1|Name=mRNA_Ecto-sp6_S_contig102.868.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=314bp MARWLLLEGAEIDAAGPKGTTPLHCSIERGHIAVVKLLLASGADVAVRQGback to top mRNA from alignment at Ecto-sp6_S_contig102:494552..495938+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.868.1 ID=mRNA_Ecto-sp6_S_contig102.868.1|Name=mRNA_Ecto-sp6_S_contig102.868.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1387bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:494552..495938+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:494552..495938+ >mRNA_Ecto-sp6_S_contig102.868.1 ID=mRNA_Ecto-sp6_S_contig102.868.1|Name=mRNA_Ecto-sp6_S_contig102.868.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:494552..495938+ (Ectocarpus species6 EcLAC_371)back to top |