Homology
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match:
A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE)
HSP 1 Score: 145 bits (367), Expect = 9.800e-39
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 3
Query: 111 MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASI 368
MAITI+RR L+GAEKQIFDFMA+TC PEQWAAWLSAAVVNAAD GKAGLVQKLA +GAEIGVAMHAAALRGDQEVANSLLQNGA I
Sbjct: 1 MAITITRRTLRGAEKQIFDFMADTCIPEQWAAWLSAAVVNAADTGKAGLVQKLATSGAEIGVAMHAAALRGDQEVANSLLQNGALI 86
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match:
D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)
HSP 1 Score: 123 bits (309), Expect = 3.030e-31
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 3
Query: 171 MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASIN 371
MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKL KAGAEIGVAMHAAALRGDQ+VANSLLQNGASIN
Sbjct: 1 MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLVKAGAEIGVAMHAAALRGDQDVANSLLQNGASIN 67
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match:
D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)
HSP 1 Score: 63.5 bits (153), Expect = 2.670e-9
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 3
Query: 126 SRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIG-VAMHAAALRGDQEVANSLLQNGASI 368
++ L+G E+++ D M +T P + + WL+A + +A +G GL QKL +AGA+IG VA+H A RG +A LL+NGAS+
Sbjct: 15 AKETLKGEEERVLDLMLDTRCPHEMSEWLAAPLESAVARGDEGLAQKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASV 96
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match:
D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)
HSP 1 Score: 63.2 bits (152), Expect = 3.500e-9
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3
Query: 111 MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASI 368
+A RRAL+GAE + FD +E T WA L + AA +G L QKL +AGA++G A+HAA G EV +LL++GA +
Sbjct: 17 LANEQGRRALKGAEGETFDLFSEVLTTHGWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACV 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 9.80e-39 / Id = 89.53 Expect = 3.03e-31 / Id = 97.01 Expect = 2.67e-9 / Id = 42.68 Expect = 3.50e-9 / Id = 43.02 Sequence A0A6H5JBC2_9PHAE D7G981_ECTSI D7G137_ECTSI D8LL12_ECTSI
Match Name E-value Identity Description
A0A6H5JBC2_9PHAE 9.800e-39 89.53 Reverse transcriptase domain-containing protein n=... [more] D7G981_ECTSI 3.030e-31 97.01 Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more] D7G137_ECTSI 2.670e-9 42.68 Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more] D8LL12_ECTSI 3.500e-9 43.02 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 1 Seed ortholog score 124.4 Seed ortholog evalue 2.6e-26 Seed eggNOG ortholog 2880.D7G981 Model size 372 KEGG ko ko:K21440 Hectar predicted targeting category other localisation GOs GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259 Exons 2 EggNOG free text desc. response to abiotic stimulus EggNOG OGs COG0666@1,KOG4177@2759 Cds size 261 COG Functional cat. G Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04131
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348738.6944554-UTR-Ecto-sp6_S_contig102:490289..490318 1682348738.6944554-UTR-Ecto-sp6_S_contig102:490289..490318 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig102 490290..490318 + 1682348738.7101202-UTR-Ecto-sp6_S_contig102:494165..494246 1682348738.7101202-UTR-Ecto-sp6_S_contig102:494165..494246 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig102 494166..494246 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348738.722896-CDS-Ecto-sp6_S_contig102:494246..494507 1682348738.722896-CDS-Ecto-sp6_S_contig102:494246..494507 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 494247..494507 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.867.1
>prot_Ecto-sp6_S_contig102.867.1 ID=prot_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=87bp
MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLV back to top mRNA from alignment at Ecto-sp6_S_contig102:490290..494507+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.867.1 ID=mRNA_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4218bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:490290..494507+ (Ectocarpus species6 EcLAC_371)CGCTTGGAACGTACTGGAAATACAGATAG GTGAGGTGGTGCTTTGTGGCC
GCGCCGTTTCTGGTCTCGCTCTCTTCCTCCAGCTAGCTGCAATCGACCCA
ATTCGCGCCAACCCCCCCAAACTCGAAGCTGCGTTTACAGCAGCAGGTCT
GCGGCGCCTGTCTTCACGCCGCTGTCGCGCTGTGGAAATCAACCTCAACC
GACCCAGTTCTCTGCGACAGTACACACCGCAACGCTCAGTCTAGTGCCTG
TAATATTGTGGATTCGGTGCTTGGATCCCCTTGATAGCGCAGAAGAAGCC
GTTGGTGGCCGCGTAGTCGGCAATGACCGCGAAGAGCGTTAACGCTCCGC
ATTTCGCGTCGCGTAGCCCCCGTGCCTAAAGTTGATGAAATTCAGTTGTT
CGCGTTCGTTCGAGGGCACTGCCGTGAGGGGTCATGTACGATAGATCGAC
ATGCATTCCGCAAAGAACCTTTTCAAAAGTATTGCCAAACCCTGTCAAAA
CTCATGAACATGCACGTGATCATGACCATGGATGGTTTCAGCGGCAACAA
TCGACACAACAGGGCGTATACTTGCACGCTGGTCAAAAAGCGACCCAGCC
ATGGGTACACATAGTTTGGCAGCGTCAAAAGAGCCTTGCTTGTTGGTCAA
CGTTCACATTAGCCCCGTATGACCCGGGTAAATACCTCTGCCATAGCTTC
TTTTCTCCAGAATTATTCCCGAGTTTCGGAAACACACCTTGATCTGACGG
GAAATGGAACCCCTTTCAGGCGAAATCCTCCGCTGCGTCTATTTCCGCAC
CTGCCATACTGTACCCACCACAGGAACTCTTCCTGCTCGCAACAAACACA
GTGCATGACACAGAACATAATTCCGTTGGGCAAGGAAAGCTGCATGTTGC
GGTGTATACACGATACGAGTCACCCTCAGAATGCGACCGATCCAGCGTAG
TTGATAGCAGTGGGGTTTCAAAGAAATGTATGTGTGGGTGTGTGGCGGCG
AGCTCATGGTTGCAGAAACGCGGGAGGACACAAACACACGCCGAGCGAAT
TATCATGGAAGGAGCCAGTAGTGCACAATTGGCCCGGCTAGTCATCCTAC
GCCATTAGCCATCGATGTCGGCCCTGCTTTTAGCACTCCCCGCAAGTCCT
ATCGTCAGGGTGCAGAAGGCAACTCATTTAGCCTCCGGTCCTCCAGCACA
ATTCCGTGTGTTGCAGCGTTGCAGCGCGTTCAGTCTCTGTTTTTGTAGGG
GGTAGTACGCTCACCCCCATCCCAATTCCGTGTGTTGCAGCGTTGCAGCG
CGTTCAGTCTCTGTTTTTGTAGGGGGTAGTACGCTCACCCCCATCCGCGA
CGAATCGCTCGTGTGTGTGTATTTCTTGTTAGCATCGACCGCGCTAACCA
GCTGACCAATGAAAATGTATGTTGTGTCCTTTCGCCCGCCACTACGGGCT
CGCTGCCACACACCGGCGCATGCATCCTTTAAGGTCGTGACCAATGAAAA
TGTATATGTGTGTCCTTTCGCCTCTCCGCCACTACGGGCTCGCTGCCACA
CACCGGTGCATACATCCTTATAAGTCGACGTTACAACCCATATATTCCAT
ATACCCGTGCTGGGTCGGCCGCGTCCTGAGCGTAACTCGTAGCTCGCGTT
ACCCGCATCTGTACATATTTATCGGCTGCTGTGCTGATCGCGCTGTGTAC
CGCTGATTGTTTGTTTCGATGGGGAAGAGTTCATGGTTGGTGTCCTACGG
TAGGAGCAGAAATGCATTCCTGCGGAGGAAATGGCCGATGGAAGGGGTTT
ACTTCCCGTCAAATCAGGGCACGTTTCCGAAACCGGCGTACATTTCGGGA
GAAACGTAGCTGTGGCTGGGTGTACATCGGGCAGTTTTGGACACGGCAAG
GTGAAAGTGGACGTTGGCCAATCCGCATGGCTCCTTTGACTCAGCCAAGT
AAGTGTGTACCCGGCTGAATCGTTTTTTGACCAGGATACCCTGCGGTGTA
GATTGCTCTCCCCCCAATTGAGATCCGGATAAGCCCAGTTGGGTCGCGAT
CTCGTGCTCTTCGCATACGTATCGAGTTGCCATCGAAAGTAGAGGGGAGT
CTCAATCAAAAAATTTCTTCCGCAAAGCGGTGTCGATGTGTGTATGTGCG
TGCTTGTCCCATCTATTCTGGCGCCAGCGTCAACACTTTTTTAGAGTACA
TGTTTGATGTGTGACACACAAGAGGACGGTCACACAGGAGGTTTTGTACC
AGTAGGGCGGGGTAAAGAGCCGTGGGGTGCGAGTCAATGCCTGCAGTCCA
CCGGCGATGCTGTTCGAGACGCGCTGCTTCTAGGCCACCACACGCGCTCG
GAGACTTCCGCAGTTCATGCATACGTATCTGGAATATCCAAGCAGGTGTT
CAAGGTTGTGCATCCGCTCCCCCCTGGGTCAAGTGCTACACCAGAGGCGG
AGGAGCAAACACACACACCGTGACACACTTGCCCCTGCTACAGCAGCACC
GCCAGACCATCGGCACCTAACAGCACTGCCGCCGGCATAAATTAACGACG
GTGGCGGACACGAAAGTACATGATAGAGCCCATCGGGCAGCGTGGTGTGG
AAAGTAGCAGGAGCGGTTCAAATAGAGCACGCTCTCACCCTTTTTTGTGG
TGGAATTTTTCTAATCAACTGACTCGTGTCCTCAATGTTTGGGTTGCTGG
AGGCGGCGTTATTTAATTGCTTGCCTACTTGCCCGACCTATGGCTGTCCG
ACGAAGACATCATATCAATCGTTCTGAGTCTCGTTTGGCGACTCCTTCAA
CAACACCAACGCCCCAACTGCGCTCTGTTGCAGCTGCTGCTCTCCCAAAG
ACTCCCAGCAATCGTACCGTCGGCCACCATTGTGAGATTTCCCAACGGCA
GGACTGCTTGTTGTGTAGCCAGAGAGCGGGCACCAGGTCTGCTGTTACTG
CTGTGCTTTCCCACGTACGGAAGGGATTGGTCCTCATAGGACGGGTGTGT
TTCTGTGGATGTGCGCAACGTATCTGTGTTACCTCTGTTTCTCCGTTTGT
TGAAATAGCGTGGGCGAATTTTCCGCTTCTGTGTTCATCCTTTCAACTCC
CGGGGTTAATTGTGAGGTATCTCCTACGGATTGCCGGGACAAATGCTGGT
GTAGCACGGCCACATCTTGTCAGAGTACCACCAAACCGGTGTGACGAAGT
GTGCCCTATTTTCTTCCTCTTCGGAAGCCAACAGGTCGTCAATCGGCGTT
CTATCGGTCTTTTAGGCTTCGCGGAATTCTCGCGGAAATCACACGAGACC
CCCTTCATCGCTTTGGATCAGGCCGATATTTCGAGCCGTTTTTTTTATTT
TTTCCTCCTGGGATGAAGGGACAAATGGTGGCGGCTTCGCCGTTCCACGG
CAATTAATCATGTTTTGTTGGTTTCTTTCCCTCCCTCCCCACCGCAGTTC
TTGCCTTAGTTTAAATCGCGAGACGGGTTCCTTCCCTCGTTGACCGTCAT
GTGAATCACAACAGCCAGTGCAATAGATCGCCAGCAGGAAGTCGATGTTT
CGCATTCAAAGAGTGATCTGGTCCACTCTGAGAAGGAAAATGAATGTCTT
GATGCTCGCCGATGTTTGCAGAGTTCGCCAGTGGAGCGAGAGTTGCTGTT
GGCCAAAGCACGGTATGCATACTCCTCGCCCAACAGCCTCCCAGGTTGCA
TGTGTGCCTGTTTTTCGTTAGCCACATTGGACCAATATGCACTTGAACGT
ATGCCATGGGGTGCAGCACCTTTGCTCGAGAAAGTAGCAGGCGACCAGGA
CCGAATTATGACATTTGTTAGCTTAAACAATCACTGTGTCTGAGGCGCAT
TGCGTGTGTTGTGTTGTGCATTTCAGGCTCCTCTACATCCTGCCACCCCC
ACCCCATCGCGGCCGACCGCGGGACAACGTAAACCTCGCCGGTAGAGACT
TCCAAGA ATGGCGATCACGATCTCCCGCCGCGCCCTTCAGGGGGCAGAGA
AGCAGATATTCGACTTCATGGCAGAGACCTGCACACCCGAGCAATGGGCG
GCCTGGCTCAGCGCTGCTGTGGTGAACGCCGCTGACAAAGGAAAGGCAGG
TCTCGTACAGAAGCTAGCGAAGGCAGGAGCAGAGATCGGGGTTGCAATGC
ACGCGGCGGCGTTGCGCGGCGATCAGGAGGTCGCCAACAGTCTGCTGCAG
AACGGAGCATCAATCAAC back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:490290..494507+
>mRNA_Ecto-sp6_S_contig102.867.1 ID=mRNA_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:490290..494507+ (Ectocarpus species6 EcLAC_371) back to top