mRNA_Ecto-sp6_S_contig102.847.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE) HSP 1 Score: 640 bits (1652), Expect = 1.030e-200 Identity = 327/342 (95.61%), Postives = 335/342 (97.95%), Query Frame = 3 Query: 171 DHQPYLDLGPEGLFPAPLDRRDGVMRATVETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALEGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPWYELRPGGAELDVTAAELGQWVDEVTRVLLVDSVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGAGSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 1196
D QPYLDLGPEGLFPAPLD R+GVMRAT+E+RFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDV LIDEALGRSLGSVAELA++VEEAKAAL G GSGVKAAV+SMSELEEYAENLCLSWTLPGYPWYELRPGGAEL VTAAELGQWVDEVTRVLLV+SVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEG GSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMS+LDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD
Sbjct: 2017 DRQPYLDLGPEGLFPAPLDHRNGVMRATLESRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVSLIDEALGRSLGSVAELAQQVEEAKAALGGVGSGVKAAVQSMSELEEYAENLCLSWTLPGYPWYELRPGGAELGVTAAELGQWVDEVTRVLLVESVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGTGSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 2358
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: A0A835Z7D6_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA) HSP 1 Score: 280 bits (716), Expect = 4.170e-83 Identity = 165/332 (49.70%), Postives = 200/332 (60.24%), Query Frame = 3 Query: 201 EGLFPAPLDRRDGVMRATVETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALEGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPWYELRPGGAELDVTAAELGQWVDEVTRVLLVDSVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGAGSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 1196
EGL+P P+ A + +RFR LGRL+GKALKDGR LDLPLALPLC + G R T A +DV LID +L RSL + +L A+ A G+ A LCL+WTLPGYPWYELRPGGA V A + + V LLV V Q+ + +GV+EV+ L V + ELQ ++ A E W G I +VVCRHGYT +SSQV L V+S+LD RR FL FVTG+PRLP+GGF AL+PRLTVV+K+ PD HLPSCSTCQVYLKLPAYT +A L AKL AI EG++HFALD
Sbjct: 30 EGLYPRPVPP---ARAAEMASRFRSLGRLIGKALKDGRALDLPLALPLCAWLTG---RATFSAA----ADVALIDASLSRSLAVIVDLG-----ARFAAAPRGA---AGASXXXXXXXXXXALCLNWTLPGYPWYELRPGGAAAAVAAGDAAAYAAAVAEHLLVRGVAAQLRDVERGVAEVLGAGALRVFAPRELQAMLGXXXXXXXAAEHWRTGAIAGAVVCRHGYTAESSQVAALVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRKDTP-----RPDEHLPSCSTCQVYLKLPAYTCKAVLRAKLLQAINEGREHFALD 338
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: A0A2R5GSN0_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSN0_9STRA) HSP 1 Score: 240 bits (613), Expect = 6.230e-62 Identity = 144/317 (45.43%), Postives = 194/317 (61.20%), Query Frame = 3 Query: 246 RATVETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALEGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPWYELRPGGAELDVTAAELGQWVDEVTRVLLVDSVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGAGSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 1196
R V T F +GR +GKAL+D R+LDLPL++PLC L++G + L LSD GL+DE LG+S + +LA +A A L +G + A + ELE+ +C+ +T+PG EL GGA VT A L +++D V + +L D V QV L +G+S L V S ELQ L+S G+ W+ IMA++VC+HGY + Q++ L V+S+LD RR F++F+TG+PRLP+GGFG LRPRLTVV+K V PD LPSCSTCQVYLKLP Y+SR L+ +L A+ EGQ HFALD
Sbjct: 2500 RERVLTIFTFVGRFIGKALQDKRLLDLPLSIPLCKLLIG---------ESLKLSDAGLVDETLGKSFQYLQDLA----DAHAQLSAR-AGEEDADAELCELEDTICGMCIDFTVPGTNGEELVVGGASKSVTGANLQEYLDLVCKRILHDDVAEQVRCLREGISAFFPVEALQVFSPHELQSLLSDGDDGA----NWDAEVIMANIVCKHGYDARARQIRDLVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNV----ADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFALD 2794
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: D7FHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF1_ECTSI) HSP 1 Score: 212 bits (540), Expect = 8.190e-61 Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 3 Query: 243 MRATVETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALEGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPW 602
MRATVETRFRL MGKALKDGRML+LPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAAL GEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPW
Sbjct: 1 MRATVETRFRL----MGKALKDGRMLNLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALGGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPW 116
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: D7G4E7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI) HSP 1 Score: 190 bits (483), Expect = 1.680e-53 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 3 Query: 921 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 1196
MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD
Sbjct: 1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 92
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: A0A7S1G2E8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2E8_9STRA) HSP 1 Score: 209 bits (532), Expect = 8.730e-52 Identity = 139/335 (41.49%), Postives = 189/335 (56.42%), Query Frame = 3 Query: 204 GLFPAPLDRR-DGVMRATVETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALEGEGSGVKAAVRS-MSELEEYAENLCLSWT-LPGYPWYELRPGGAELDVTAAELGQWVDEVTRVLLVDSVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGAGSGADE-EWEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 1196
GLFPA + R TV + F GR + KAL DGR+LDLP A+P C ++G +P LSDV L+D G+SL ++ EL E K A+E + S A + + ++ L E + + +T G EL+PGGA+ VT LG++++ T +LVDS+ QVE +G + + S+L V SA EL ++SG GS E W +I+ +VC HGY S QV+ L +MS+ T+ RR FLRFVTG PRLP+GGF +LRP LT+VK PG D +P+C C VYLKLPAYT L KL AI +GQ+ F +D
Sbjct: 2592 GLFPAAIPASVSDARRDTVLSLFEFCGRFVAKALADGRLLDLPFAVPFCRRLLG---------EPAMLSDVILVDPEFGKSLLAMQELC----ERKRAIESDASLSAADLEARLAPLREEVDAYMIDFTHADGDDMVELKPGGADELVTIDTLGEFLELCTHHILVDSIGAQVERFCEGFAAIAPISSLKVFSAVELSDVLSG---GSDLREGAWNADSILPHIVCDHGYQKTSPQVQQLVSIMSEFTTQERRLFLRFVTGAPRLPMGGFASLRPPLTIVKTVPP--PGRIADEMMPTCMVCSVYLKLPAYTEPVVLRDKLHMAIRDGQESFEMD 2908
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: UPI001C918089 (E3 ubiquitin-protein ligase TRIP12-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C918089) HSP 1 Score: 204 bits (518), Expect = 1.800e-50 Identity = 140/341 (41.06%), Postives = 191/341 (56.01%), Query Frame = 3 Query: 180 PYLDLGPEGLFPAPLDRRDGVMRAT-VETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVE--EAKAALEGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPWYELRPGGAELDVTAAELGQWVDEVTRVLLVDSVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGAGSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 1193
P P GL+PAP+ R + T + T+F LGRLM KAL DGR+LD+ L++P + LRR T ++L+D+ +D L S+ +A AR E AAL E +AA+ +++ E L L +TLPGYP ELR GG VTAA L Q+V +T +L++ V Q+EA +G V L++ EL +L G D W+ ++ + HGYT DS+ + L V+S+LD RRQFL F TG+PRLP+GGF AL P LTVV+K V+ PG +PD++LPS TC YLKLP Y+S +L AI+EGQ F L
Sbjct: 746 PEYVFAPHGLYPAPIGRTEKNTSVTRLRTKFTFLGRLMAKALADGRLLDMSLSVPFYQWL--LRRERT-----MSLTDLHQLDGTLATSVARLANAARRRRALETDAALSDEQR--RAALAALTVDGCAVEQLGLDFTLPGYPDIELRRGGRAEPVTAANLEQYVKLLTHWILIEGVHKQMEAFREGFESVAPLDNLAMFQPEELDQLFCGT-----QDALWDRQSLAEAFRPDHGYTADSAPFRHLVTVLSELDPRQRRQFLSFATGSPRLPVGGFRALTPPLTVVRKAVE--PGHSPDTYLPSVMTCVNYLKLPEYSSVEVTRRQLTLAISEGQLSFML 1070
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: A0A6A4X1F7_AMPAM (E3 ubiquitin-protein ligase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4X1F7_AMPAM) HSP 1 Score: 203 bits (516), Expect = 5.540e-50 Identity = 140/341 (41.06%), Postives = 190/341 (55.72%), Query Frame = 3 Query: 180 PYLDLGPEGLFPAPLDRRDGVMRAT-VETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVE--EAKAALEGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPWYELRPGGAELDVTAAELGQWVDEVTRVLLVDSVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGAGSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 1193
P P GL+PAP+ R + T + T+F LGRLM KAL DGR+LD+ L++P + LRR T ++L+D+ +D L S+ +A AR E AAL E +AA+ +++ E L L +TLPGYP ELR GG VTAA L Q+V +T +L++ V Q+EA +G V L++ EL +L G D W+ ++ + HGYT DS+ + L V+S+LD RRQFL F TG+PRLP+GGF AL P LTVV+K V+ PG PD++LPS TC YLKLP Y+S +L AI+EGQ F L
Sbjct: 1130 PEYVFAPHGLYPAPIGRTEKNTSVTRLRTKFTFLGRLMAKALADGRLLDMSLSVPFYHWL--LRRERT-----MSLTDLHQLDGTLATSVARLANAARRRRALETDAALSDEQR--RAALAALTVDGCAVEQLGLDFTLPGYPDIELRRGGRAEPVTAANLEQYVKLLTHWILIEGVHKQMEAFREGFESVAPLDNLAMFQPEELDQLFCGT-----QDALWDRQSLAEAFRPDHGYTADSAPFRHLVTVLSELDPRQRRQFLSFATGSPRLPVGGFRALTPPLTVVRKAVE--PGHCPDTYLPSVMTCVNYLKLPEYSSVEVTRRQLTLAISEGQLSFML 1454
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: A0A7R8X6M6_9CRUS (E3 ubiquitin-protein ligase n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X6M6_9CRUS) HSP 1 Score: 192 bits (489), Expect = 7.450e-50 Identity = 130/335 (38.81%), Postives = 180/335 (53.73%), Query Frame = 3 Query: 192 LGPEGLFPAPLDRRDGVMRAT-VETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALEGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPWYELRPGGAELDVTAAELGQWVDEVTRVLLVDSVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGAGSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 1193
P GLFPAP R ++T+FR LGRLM KAL D RMLDLPL+ ++G R L + DV ID + RSL + +L R E A E +G+G L ++L L +TLPG+ EL GG ++ VT L +++ V LV+ V Q+EA +G V + L++ + EL +L G G+ S A W+ T++ + HGYT +S +KWL ++S E +R+FL+FVTG+PRLP+GGF +L P LTVV+K ++ P D+ LPS TC YLKLP Y+S + KL A EGQ F L
Sbjct: 133 FSPTGLFPAPQPRSAKSSTINKIKTKFRFLGRLMAKALMDSRMLDLPLSEAFYAWLLGEERC-------LTVKDVAHIDTTMARSLSELIDLVRRRELA----EWDGNG------ETETLVTAVDDLALDFTLPGHG-MELCKGGRDITVTLENLQKYLQLVCHWTLVEGVSRQMEAFKEGFEAVFPLTNLNLFYSWELDQLFCGGGSQSAAGNSWDVRTLVEACRPDHGYTHESRAIKWLFEILSSYSEEEKRRFLQFVTGSPRLPVGGFKSLSPPLTVVRKTLE--PDEDADAFLPSVMTCVNYLKLPDYSSSEVMRMKLDVATREGQLSFHL 447
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Match: A8I5Z4_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8I5Z4_CHLRE) HSP 1 Score: 189 bits (481), Expect = 3.210e-48 Identity = 131/348 (37.64%), Postives = 178/348 (51.15%), Query Frame = 3 Query: 198 PEGLFPAPLDRRD-------GVMRATVETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALEGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPWYELRPGGAELDVTAAE-LGQWVDEVTRVLLVDSVLVQVEALVKGVSEVMDPSTLSVLSAGELQRLISGEGAGSGADEEWEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGG--------TPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 1193
P GLFP PL A V FRLLGR + KAL+D R+LDLPL+ +G PL + D+ D LG +L + AAL + A + E+LC+++ LPG P Y LRPGG ++ V+ AE L +++ VT L V Q+ A +G +EV STLS+ + E++ L+ G G E W + ++ HGYT +S VK+L +MS+LD +R FLRFVTG PRLP GG AL+PRLTVV+K + G D+ LPS TC Y+KLP Y+S+A + A+L +AI EGQ F L
Sbjct: 185 PWGLFPRPLPPASVSGXXXXXXXAAKVVEHFRLLGRTLAKALQDNRLLDLPLSHVFFAAALG---------SPLDMWDIARFDPGLGATLARL----------HAALVAHRAAGGAVSGPLLVDGVPLEDLCITFVLPGQPDYPLRPGGGDMVVSTAEQLAEYMAAVTDATLGSGVAAQMGAFREGFNEVFSLSTLSIFNEDEIEVLLCGSG------ERWTLQALSEAIKFDHGYTANSQPVKYLLEIMSELDAADQRAFLRFVTGCPRLPPGGLTALQPRLTVVRKHPRWVAAGLGGAGTMCAADADLPSVMTCANYIKLPPYSSKAVMAARLMYAIREGQGSFDL 507 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.847.1 >prot_Ecto-sp6_S_contig102.847.1 ID=prot_Ecto-sp6_S_contig102.847.1|Name=mRNA_Ecto-sp6_S_contig102.847.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=319bp MRATVETRFRLLGRLMGKALKDGRMLDLPLALPLCGLIVGLRRRPTAGAKback to top mRNA from alignment at Ecto-sp6_S_contig102:204327..215469+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.847.1 ID=mRNA_Ecto-sp6_S_contig102.847.1|Name=mRNA_Ecto-sp6_S_contig102.847.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=11143bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:204327..215469+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:204327..215469+ >mRNA_Ecto-sp6_S_contig102.847.1 ID=mRNA_Ecto-sp6_S_contig102.847.1|Name=mRNA_Ecto-sp6_S_contig102.847.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=957bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:204327..215469+ (Ectocarpus species6 EcLAC_371)back to top |