mRNA_Ecto-sp6_S_contig102.844.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig102.844.1
Unique Name	mRNA_Ecto-sp6_S_contig102.844.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

[Close]

BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.160e-22
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:   52 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRR 201
            AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHR+
Sbjct: 1129 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK 1178

[Close]

BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.330e-15
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1

Query:   52 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLE 171
            AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQ E
Sbjct:  893 AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQEE 932

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig102.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FHF4_ECTSI	2.160e-22	98.00	Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
A0A6H5K1B4_9PHAE	4.330e-15	97.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig102	contig	Ecto-sp6_S_contig102:184941..185576 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	238
Hectar predicted targeting category	other localisation
Exons	2
Cds size	237

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348736.9073088-CDS-Ecto-sp6_S_contig102:184940..185105	1682348736.9073088-CDS-Ecto-sp6_S_contig102:184940..185105	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig102 184941..185105 +
1682348736.9167752-CDS-Ecto-sp6_S_contig102:185504..185576	1682348736.9167752-CDS-Ecto-sp6_S_contig102:185504..185576	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig102 185505..185576 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig102.844.1	prot_Ecto-sp6_S_contig102.844.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig102 184941..185576 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig102:184941..185576+
coding sequence from alignment at Ecto-sp6_S_contig102:184941..185576+

protein sequence of mRNA_Ecto-sp6_S_contig102.844.1

>prot_Ecto-sp6_S_contig102.844.1 ID=prot_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=79bp
AAVREAEAEAEAEARERAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTK
WYTVQLEKSFKSYRHRRKKEKQAALEAR*

mRNA from alignment at Ecto-sp6_S_contig102:184941..185576+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig102.844.1 ID=mRNA_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=636bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:184941..185576+ (Ectocarpus species6 EcLAC_371)
GCAGCCGTGAGGGAAGCTGAGGCTGAGGCTGAGGCCGAGGCTAGGGAGAG
GGCGGAGGCGAAGGAGGTCGATCTGCTGCGGAAGCTGGCGGTGGGGCTGC
ACCCGGTGCTGCTGGTGGAGCCGCTGACGACCGTGCGGGAAGTGACCAAG
TGGTACACGGTTCAGGTAGATCATGTCGCTGCTGTTGATGTGGTCGCTGT
TGTTGTGGCTGCTGTTGCTGTTGCTGTTGCTGTTGTTGTGGTCGATCATA
CGTGTTGTTGTCGTCGTCGGTGGTGTTGGTGTTGGTGTTGTTGTTGATTA
TATTTGTTGTTGTTGTCGTTGTTTTTGGTGCTGAGGGGGTGGTGGTGGCG
GGTGGCCGTTGTCCTGCGTAAGTTGCCTACGATACCACACCCCATGGACC
GATTTTTTATGTCCCAAACGTCAGCGCCGTTGCATTTTCACCGCGTGCGT
CATGTGCCCTATAGAGCGGACGGTGTGCCTTTGGTCTTTTGGTGGGTGTG
GTTGTTGGAACCAACCCTCAAAGCGTCACCTATTCCGCCGCGTTTTTTTT
TTTTTGGTCTTCAGCTCGAGAAATCGTTCAAGAGCTACCGGCATAGGAGG
AAGAAGGAGAAACAAGCGGCTTTGGAGGCCAGGTGA

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:184941..185576+

>mRNA_Ecto-sp6_S_contig102.844.1 ID=mRNA_Ecto-sp6_S_contig102.844.1|Name=mRNA_Ecto-sp6_S_contig102.844.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:184941..185576+ (Ectocarpus species6 EcLAC_371)
GCAGCCGTGAGGGAAGCTGAGGCTGAGGCTGAGGCCGAGGCTAGGGAGAG
GGCGGAGGCGAAGGAGGTCGATCTGCTGCGGAAGCTGGCGGTGGGGCTGC
ACCCGGTGCTGCTGGTGGAGCCGCTGACGACCGTGCGGGAAGTGACCAAG
TGGTACACGGTTCAGCTCGAGAAATCGTTCAAGAGCTACCGGCATAGGAG
GAAGAAGGAGAAACAAGCGGCTTTGGAGGCCAGGTGA