Homology
BLAST of mRNA_Ecto-sp6_S_contig102.842.1 vs. uniprot
Match:
D7G7E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E7_ECTSI)
HSP 1 Score: 118 bits (296), Expect = 1.200e-30
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1
Query: 412 KVLVRLRHVYDHDAELYEEFSRELLSPLLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK 600
+VLVRLRHVYDHDAELYEEFSRELLSP+LRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK
Sbjct: 34 EVLVRLRHVYDHDAELYEEFSRELLSPVLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK 96
BLAST of mRNA_Ecto-sp6_S_contig102.842.1 vs. uniprot
Match:
D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)
HSP 1 Score: 66.6 bits (161), Expect = 5.290e-9
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1
Query: 598 KEVVHDLAAALYRLLSKRDPLLKAEAFRVAEIVLA 702
KEVVHDLAAALYRLLSKRDPLLKAEAFRVAEIVLA
Sbjct: 437 KEVVHDLAAALYRLLSKRDPLLKAEAFRVAEIVLA 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.842.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.20e-30 / Id = 96.83 Expect = 5.29e-9 / Id = 100.00 Sequence D7G7E7_ECTSI D7FHF4_ECTSI
Match Name E-value Identity Description
D7G7E7_ECTSI 1.200e-30 96.83 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D7FHF4_ECTSI 5.290e-9 100.00 Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Model size 702 Hectar predicted targeting category other localisation Exons 5 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-00_010230.1 Cds size 702
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348736.8137329-CDS-Ecto-sp6_S_contig102:175062..175158 1682348736.8137329-CDS-Ecto-sp6_S_contig102:175062..175158 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 175063..175158 + 1682348736.823236-CDS-Ecto-sp6_S_contig102:176037..176245 1682348736.823236-CDS-Ecto-sp6_S_contig102:176037..176245 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 176038..176245 + 1682348736.8320255-CDS-Ecto-sp6_S_contig102:176771..176881 1682348736.8320255-CDS-Ecto-sp6_S_contig102:176771..176881 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 176772..176881 + 1682348736.840618-CDS-Ecto-sp6_S_contig102:177761..177947 1682348736.840618-CDS-Ecto-sp6_S_contig102:177761..177947 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 177762..177947 + 1682348736.8499477-CDS-Ecto-sp6_S_contig102:178590..178692 1682348736.8499477-CDS-Ecto-sp6_S_contig102:178590..178692 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 178591..178692 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.842.1
>prot_Ecto-sp6_S_contig102.842.1 ID=prot_Ecto-sp6_S_contig102.842.1|Name=mRNA_Ecto-sp6_S_contig102.842.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=234bp
MAGTRHHSTRTVQVPRLLYATCGGDLGTRVTYQSRLSALGFGRDLSSGGG back to top mRNA from alignment at Ecto-sp6_S_contig102:175063..178692+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.842.1 ID=mRNA_Ecto-sp6_S_contig102.842.1|Name=mRNA_Ecto-sp6_S_contig102.842.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3630bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:175063..178692+ (Ectocarpus species6 EcLAC_371)ATGGCGGGCACCCGGCACCATTCGACCCGCACTGTACAAGTCCCTCGACT
ACTGTATGCCACATGCGGCGGAGATTTGGGGACACGCGTTACGTAT GTGC
GCCAAAGCTGGCGATTTTCTTGCCACTGCCCAGTTCAACAGCAGTGTTTG
GGTTGTGGTTAGAGGTAGCCACGAAACCAAAGCCACTTGTAGCAGGTTTT
TCAGGCCTCGGGCTACAACACCACGGCGCTAGGCTTCGCAAGGCCCAACT
TACCCCTAAACCCTAACCCTATCTCTAACCTAACCCTAACCCTAACCCTA
ACCCTAACCTTACCCCTAAACCGTAACCCTAACCCTAACCCAAACCTAAC
CCTAACCCTAACCTTACCCCTAAACCGTAACCCTAACCCAAGCTAGATTG
TGGGTAGGCCTAGGTCGCCGTACCGAGCTGCTGGAGCGCGCTTCGCGCTC
GCCAGCTCTGGCCTATTCGTACGCCTCGTGAATGGCACCCCTCCCCCGCT
TAGACCGACGTTCGGAGCTCGGTTGCCCCAGAACCAAACGGGGTGCGGAA
AGAGCCGGACAGTTCCACGAAAAGCCGCCGACGATGAGATGTTTCCGAAA
CCGTCATTTTTGGTTTGAGGAGCAATGGAATAGAGCTTGGAAAATCGGTC
TGGGGGGAGTGTCATCTCTCCGACTCTTACGGTATATTAGCGTGGTGTTC
CATCAGACGTAGTAGATACGGTGGGGGCGAGGTCGTACCGTTCCCCTTGT
TTGCGAGAGCAGTCGCAGAGGAATTTAGGGCGACGGGGAGGGAGTCTTGG
TTGCCCCCTATCAATCTCTCACTCTTTCTCTCTCTCTCTTTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTC
CCACGTTACGCTTGGCCGGGCGCAGCAGTCGAGATTGTCTGCTCTCGGCT
TCGGACGCGACCTCTCGAGCGGCGGGGGCGGCGGCGGCGGTGGGTCAATG
TGGGACCCTGACCCCATGGCTGCAGACGACGACGACGAGGATGGCGAGGA
CGGCGGAGGGGGAGCGGGGGGAGTCCAAGGGTTCGTTACGGAGTGGCACG
GCGCTGGCAGCGGCGGCGGCGGCAGTAGAAGAG GTGAGAAAGTGGTGTCG
TTAGCAGGGGTACTGTAGCGACGTGCTCTGTTTCTGAACATTTCGGCTTT
GTTGATTGTTGGGGTGGTGCACCGTTCTGCAATATTTTTCTTGGCGAGAA
CGAAAATAGCCAAACATCCGTCTTTGCTCGTTTTCATTTGTAAATATTTG
GGAAAATGGGTAATTGGAATCAACAACACGCTTCAGTAACTTGTTTCGCG
GTGTTTGCATACCAATGTGTTTCATGTGCGGCATGCGTTTACATGAACCA
AGTGACATGTGTTGGTCTCCTTTAGCATCCTCATGGCACAGTCGTTACGC
CTCACAGCTTTCCCGCCCCTACCAGGTATTAGCCTCCGCATACCGCCCTC
CCCCCTCCGCTCAAAACTCATTCGCGTCCACCTGCCGCCTCCGGTGAAGC
GAAGGCCGACCCCACCTCCTCCCCCGGGTATTATTAGCCTCCTTATACCC
CCCCCCCCCCCCCCCCCCCCCCTCCGCTCAATACGCATTCACGCCCCCCC
CCGCTGAAGCGAACGGCGAAGAAGGCGAAGGCCAACAGGAAGAAGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAAGCCGACAA
GTTTCCTCCTGACGGCAAG GTGTGCAGTGCTTGCGTTGACATAAAAACGG
AGATATGGGAATTGGACGAGCAGATTTGTTCAGAGCCGTGATTTTGAGTT
TTTGAGTTCGGAGCCGGTATGAGGCTGGCAGGGCTACAACCGCAAGCAAG
CGAAAAAAAGTTGGGAAAATGGAGAGAGACGAGCAGATGTGTAGTCATTT
TAACGGCGCTTGTGTGAATGTCAGCGTGATAACCCCGGCACTGAATAGTA
GGAACGACAGCAACGAAATGATAACTGTTGCACACCACCAACCAAACAAG
CAGGACAATCCAATCGTCAACCCAAAAAAGACACACACGCGCACATACCC
GCTGGCACTGACGTCTTTCATTGGTCAGCCGGTTGGTGCGGTCGATGCTA
ATAATAAAAACACACACACACTCCACGTGCAGTTTTCTCCTGTCACTGCT
ACAGTATATGCCTTTTATCCGGAGAGTAGCATCGACAGATCGTCATGGTA
GCCCTTTGAAACACTTTGTGTTTTCAATCGCGCTGAGACTTGAAGCCTTT
TCATTGGTTAGCCGGTTTGTTAGCGCGGTTGATGCTAATGAAGAACACAC
ACACTTATTTAAAATAAAAACACACATAGATTTGTTTGTTTTCAACCGGA
CTTGAGACTGGCGTCTTTTCATTGGTCAACCCATTGGCGCGGTCAATGCA
CACTCAACAATACGCACAAACACACACGCAGGTGCTGGTTCGGCTGCGTA
CACACACACTAAATATTAAATAATACACACACACTGCAGTATTTTGTGTT
TTCAACTGGGCTTGAGACTGACGTCTTTTCATTGGTCAGCCGGTTAGAGC
GGTCGATGCTAATTCAACAAAACACACACAAACACACACCCGCGCGCAGG
TGCTGGTTCGGCTGCGCCACGTGTACGACCACGACGCCGAGCTATACGAG
GAATTCTCCCGCGAGCTGCTGTCGCCGCTGCTCCGCCTGGTGCCGTCGGC
GCTGTCCTCCCTCGACGCCGTTCGGCTCTCGTCGAGGGTGGTGGTGTCGC
TGCGGGAGAACTGCGTCGCCTGCCTCGTCCGAAAG GTGCGGTCAGTTTGG
TATTTATTAGCCATTATTCGTATACGCATGGGCATCGCATGCGACAGATT
TGAAGAATACATAAAAACACGGGAAGACTAAATACCCGTTCAAGATATAA
CCACACTCGAAGGGGATATTTTGAAGCCTTCACAGTGAGTGGAGGGAAAC
CGGCTGGGTACTGGGCTTGTTTCGAGTCTGTTTTATGATTTCCACTGATG
ATTTTCTTTTCTTAGTAAAAAGACTCTTTTCCATATGTTTGGATTTTGGT
TTTTAGGCTCTTCCGTCGACGGTGATCGATAGTGTAACGGTTTGACTTCC
AGATAAGATAAATAGCGCTTTCTCAGAGGTTGGTGGTGGCGTCGTTTAGG
GAGAACTGCGTCCGCTGCCTCGTCGTAAAGGCATTCTACGGTCTACCGTT
GGCGCATGCGTATGCGTGTGCATATGCGACACGGTCAATCAGTCAGTCGG
TCACTACCGTTAGAGGTTGTATAGAAGTAGATGTGTACGCATCCGTATGC
ATCTCAAAAGATGGTGCCCAACCACCACCAAAGCCTTTTCCATACAGCGC
AACCAACCGGCGTCTGCACGACCCACCCCCCCCCCCTGCCCACTCGTGCC
CCCAAACGACCAACCAAACACCCTACAGGAGGTCGTCCACGACTTGGCCG
CGGCCCTGTACCGCCTCCTTTCGAAGCGGGACCCGTTGCTGAAGGCCGAG
GCGTTTCGCGTTGCCGAGATCGTCCTCGCA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:175063..178692+
>mRNA_Ecto-sp6_S_contig102.842.1 ID=mRNA_Ecto-sp6_S_contig102.842.1|Name=mRNA_Ecto-sp6_S_contig102.842.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:175063..178692+ (Ectocarpus species6 EcLAC_371) back to top