mRNA_Ecto-sp6_S_contig102.839.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE) HSP 1 Score: 316 bits (809), Expect = 1.850e-106 Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 1 Query: 376 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKASAAASKARALMETED 897
MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTA SDKAKQ KASAAASKAR LMETED
Sbjct: 1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARTLMETED 173
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA) HSP 1 Score: 229 bits (584), Expect = 3.420e-72 Identity = 118/168 (70.24%), Postives = 142/168 (84.52%), Query Frame = 1 Query: 376 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKASAAASKARA 879
MVR+E+CYFCS +YPGHG+ F RND+KVF+FCRSKCHKNF +KRNPRK KWTKA+R+AAGKEM+VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV EVQA+REKRFF+ RHK A+EKAAI+ E++ NIELL PAAA DREK L + +Q+++ A ++A+A
Sbjct: 1 MVRVEVCYFCSGPMYPGHGVQFVRNDAKVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAA-DREKALANVKEVIRQKESKNALTRAKA 167
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: D7FZ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI) HSP 1 Score: 223 bits (568), Expect = 1.960e-70 Identity = 134/174 (77.01%), Postives = 134/174 (77.01%), Query Frame = 1 Query: 376 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKASAAASKARALMETED 897
MVRIEICYFCSSRIYPGHGIVFARNDSK DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTA SDKAKQ KASAAASKARALMETED
Sbjct: 1 MVRIEICYFCSSRIYPGHGIVFARNDSK--------------------------------------DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARALMETED 135
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A4D9CSX3_9STRA (TRASH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.650e-58 Identity = 97/154 (62.99%), Postives = 125/154 (81.17%), Query Frame = 1 Query: 379 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAK 840
+RI CYFCS +YPGHG F RND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R + A KEKAA++ E+K+N+ELLAPAAA REK L +K K
Sbjct: 1 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKARWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKVLLNVREKVK 153
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A448YUA5_9STRA (TRASH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA) HSP 1 Score: 194 bits (492), Expect = 2.250e-58 Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 1 Query: 379 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQ 846
+RIE CYFCSS YPGHGI F RNDSK FRFCRSKCH+NF +KRNPRK WTKA+R+ GKEM+VD+TFDFEKRRNRPVKYDR+ MGKT+LAM++V+ ++ RE+RFF+NR K + A++K + EI+ +IELLAPA A +RE+ + D AKQ+
Sbjct: 1 MRIEKCYFCSSPCYPGHGITFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAREQRFFDNRVKDSKAEKKQQARVEIEKSIELLAPAVA-NREQVMRNVIDSAKQR 155
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: W7T7Z2_9STRA (Ribosome biogenesis protein rlp24 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7Z2_9STRA) HSP 1 Score: 196 bits (497), Expect = 6.180e-58 Identity = 97/156 (62.18%), Postives = 127/156 (81.41%), Query Frame = 1 Query: 379 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQ 846
+RI CYFCS +YPGHG F RND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R + A KEKAA++ E+K+N+ELLAPAAA REK L +K K++
Sbjct: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVREKVKER 231
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A6U3SB39_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB39_9STRA) HSP 1 Score: 192 bits (489), Expect = 7.980e-58 Identity = 99/159 (62.26%), Postives = 127/159 (79.87%), Query Frame = 1 Query: 379 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKAS 855
+RIE CYFCSS YPGHG+VF RNDSK FRFCRSKCH+NF +KRNPRK WTKA+R+ GKE+++D+TF+FEKRRNRPVKYDR MGKT+LAM++V+ ++ KRE+RFF NR K A ++KA + EI+ IELLAPA A +RE+ + DKA+++ AS
Sbjct: 1 MRIEKCYFCSSPCYPGHGMVFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAIDSTFEFEKRRNRPVKYDRNLMGKTILAMQRVQAIKEKREERFFANRMKDAKKEQKAQARVEIEKGIELLAPAVA-NREEVMRNVVDKARERIAS 158
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A7S2DM88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM88_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.360e-57 Identity = 105/171 (61.40%), Postives = 130/171 (76.02%), Query Frame = 1 Query: 376 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKASAAASKARALME 888
MVR+E CYFCS +YPGHGI F RND+KVF+FCRSKCHKNF RKRNPRK+ WTKAFRRA KEM+VD+T DFEKRRNRPVKYDRE +G TL AM++VKE+ +RE+ F+ R K + ++ A K E+K+N+E+LAPAAA +EK L +D A+ KA+A A A ME
Sbjct: 8 MVRVETCYFCSGPLYPGHGIQFVRNDAKVFKFCRSKCHKNFIRKRNPRKTAWTKAFRRARKKEMTVDSTLDFEKRRNRPVKYDRELVGTTLRAMQRVKEIHTRREEIFYAKRMKESKTIQRQAAKVELKENMEILAPAAA-QKEKVLLNIADHARV-KAAAQRRTAAAKME 176
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A1E7FH63_9STRA (60S ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.700e-57 Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 1 Query: 379 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAK 840
+RIE CYFCSS YPGHG+ F RNDSK FRFCRSKCH+NF +KRNPRK WTKA+R+ GKEM+VD+TFDFEKRRNRPVKYDR+ MGKT+LAMK+V+ ++ RE+RFFENR A A++K + EI+ +IELLAPA A +RE+ + D AK
Sbjct: 1 MRIEKCYFCSSPCYPGHGMTFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVA-NREQVMRNVIDSAK 153
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A6U0IKM5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IKM5_9STRA) HSP 1 Score: 188 bits (478), Expect = 3.630e-56 Identity = 94/156 (60.26%), Postives = 125/156 (80.13%), Query Frame = 1 Query: 379 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQ 846
+RIE CYFCSS +YPGHGIVF RNDSK FRFCRSKCH+NF +KRNPRK WTKA+R+ GKE++VD+TF+FEKRRNRPVKYDRE MGKT++AM++V+ ++ +REK++ NR K A ++K + EI+ +IELLAPA A +RE+ + D A+++
Sbjct: 1 MRIEKCYFCSSPVYPGHGIVFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAVDSTFEFEKRRNRPVKYDRELMGKTIMAMQRVQSIKERREKQYHANRMKDAAREKKVQARVEIEKSIELLAPAVA-NREEVMRNVVDSARER 155 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.839.1 >prot_Ecto-sp6_S_contig102.839.1 ID=prot_Ecto-sp6_S_contig102.839.1|Name=mRNA_Ecto-sp6_S_contig102.839.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=175bp MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSback to top mRNA from alignment at Ecto-sp6_S_contig102:155645..159540- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.839.1 ID=mRNA_Ecto-sp6_S_contig102.839.1|Name=mRNA_Ecto-sp6_S_contig102.839.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3896bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:155645..159540- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:155645..159540- >mRNA_Ecto-sp6_S_contig102.839.1 ID=mRNA_Ecto-sp6_S_contig102.839.1|Name=mRNA_Ecto-sp6_S_contig102.839.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:155645..159540- (Ectocarpus species6 EcLAC_371)back to top |